data_X5Z
# 
_chem_comp.id                                    X5Z 
_chem_comp.name                                  "AZIDOBIS (DIMETHYLGLYOXIMATO) PYRIDINECOBALT" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C15 H23 Co N8 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    1 
_chem_comp.pdbx_initial_date                     2022-10-31 
_chem_comp.pdbx_modified_date                    2024-02-07 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        438.328 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     ? 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   Y 
_chem_comp.pdbx_model_coordinates_db_code        8EYZ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
X5Z C22  C1  C  0  1 N N N N N N 33.627 -7.489  35.073 ? ? ? C22  X5Z 1  
X5Z C21  C2  C  0  1 N N N N N N 34.393 -11.332 38.581 ? ? ? C21  X5Z 2  
X5Z C20  C3  C  0  1 N N N N N N 35.825 -11.023 38.602 ? ? ? C20  X5Z 3  
X5Z C23  C4  C  0  1 N N N N N N 35.040 -7.125  35.149 ? ? ? C23  X5Z 4  
X5Z C24  C5  C  0  1 N N N N N N 36.813 -11.817 39.400 ? ? ? C24  X5Z 5  
X5Z C25  C6  C  0  1 N N N N N N 33.732 -12.360 39.423 ? ? ? C25  X5Z 6  
X5Z C26  C7  C  0  1 N N N N N N 32.651 -6.829  34.155 ? ? ? C26  X5Z 7  
X5Z C27  C8  C  0  1 N N N N N N 35.632 -6.000  34.387 ? ? ? C27  X5Z 8  
X5Z N09  N1  N  0  1 N N N N N N 36.149 -10.012 37.861 ? ? ? N09  X5Z 9  
X5Z N10  N2  N  0  1 N N N N N N 33.734 -10.572 37.749 ? ? ? N10  X5Z 10 
X5Z N11  N3  N  0  1 N N N N N N 33.321 -8.456  35.860 ? ? ? N11  X5Z 11 
X5Z N12  N4  N  0  1 N N N N N N 35.698 -7.890  35.957 ? ? ? N12  X5Z 12 
X5Z N13  N5  N  0  1 N N N N N N 34.268 -8.044  38.344 ? ? ? N13  X5Z 13 
X5Z N14  N6  N  1  1 N N N N N N 35.073 -7.332  38.679 ? ? ? N14  X5Z 14 
X5Z N15  N7  N  -1 1 N N N N N N 35.834 -6.544  39.137 ? ? ? N15  X5Z 15 
X5Z O03  O1  O  0  1 N N N N N N 37.398 -9.547  37.785 ? ? ? O03  X5Z 16 
X5Z O04  O2  O  0  1 N N N N N N 32.418 -10.692 37.588 ? ? ? O04  X5Z 17 
X5Z O05  O3  O  0  1 N N N N N N 32.043 -8.889  35.907 ? ? ? O05  X5Z 18 
X5Z O06  O4  O  0  1 N N N N N N 37.022 -7.691  36.131 ? ? ? O06  X5Z 19 
X5Z CO01 CO1 CO 0  0 N N N N N N 34.731 -9.246  36.862 ? ? ? CO01 X5Z 20 
X5Z H1   H1  H  0  1 N N N N N N 36.289 -12.619 39.941 ? ? ? H1   X5Z 21 
X5Z H2   H2  H  0  1 N N N N N N 37.560 -12.259 38.724 ? ? ? H2   X5Z 22 
X5Z H3   H3  H  0  1 N N N N N N 37.317 -11.157 40.121 ? ? ? H3   X5Z 23 
X5Z H4   H4  H  0  1 N N N N N N 34.487 -12.871 40.039 ? ? ? H4   X5Z 24 
X5Z H5   H5  H  0  1 N N N N N N 32.991 -11.877 40.077 ? ? ? H5   X5Z 25 
X5Z H6   H6  H  0  1 N N N N N N 33.228 -13.094 38.777 ? ? ? H6   X5Z 26 
X5Z H7   H7  H  0  1 N N N N N N 31.657 -7.282  34.288 ? ? ? H7   X5Z 27 
X5Z H8   H8  H  0  1 N N N N N N 32.598 -5.755  34.387 ? ? ? H8   X5Z 28 
X5Z H9   H9  H  0  1 N N N N N N 32.978 -6.964  33.114 ? ? ? H9   X5Z 29 
X5Z H10  H10 H  0  1 N N N N N N 36.706 -5.929  34.613 ? ? ? H10  X5Z 30 
X5Z H11  H11 H  0  1 N N N N N N 35.494 -6.174  33.310 ? ? ? H11  X5Z 31 
X5Z H12  H12 H  0  1 N N N N N N 35.134 -5.062  34.673 ? ? ? H12  X5Z 32 
X5Z H14  H14 H  0  1 N N N N N N 37.962 -10.057 38.355 ? ? ? H14  X5Z 33 
X5Z H15  H15 H  0  1 N N N N N N 32.099 -11.415 38.115 ? ? ? H15  X5Z 34 
X5Z H16  H16 H  0  1 N N N N N N 31.973 -9.603  36.530 ? ? ? H16  X5Z 35 
X5Z H17  H17 H  0  1 N N N N N N 37.360 -8.328  36.750 ? ? ? H17  X5Z 36 
X5Z N1   N8  N  1  1 Y Y N N N N ?      ?       ?      ? ? ? N1   X5Z 37 
X5Z C2   C9  C  0  1 Y Y N N N N ?      ?       ?      ? ? ? C2   X5Z 38 
X5Z C3   C10 C  0  1 Y Y N N N N ?      ?       ?      ? ? ? C3   X5Z 39 
X5Z C4   C11 C  0  1 Y Y N N N N ?      ?       ?      ? ? ? C4   X5Z 40 
X5Z C5   C12 C  0  1 Y Y N N N N ?      ?       ?      ? ? ? C5   X5Z 41 
X5Z C6   C13 C  0  1 Y Y N N N N ?      ?       ?      ? ? ? C6   X5Z 42 
X5Z C7   C14 C  0  1 N Y N N N N ?      ?       ?      ? ? ? C7   X5Z 43 
X5Z C8   C15 C  0  1 N Y N N N N ?      ?       ?      ? ? ? C8   X5Z 44 
X5Z H18  H18 H  0  1 N Y N N N N ?      ?       ?      ? ? ? H18  X5Z 45 
X5Z H19  H19 H  0  1 N Y N N N N ?      ?       ?      ? ? ? H19  X5Z 46 
X5Z H20  H20 H  0  1 N Y N N N N ?      ?       ?      ? ? ? H20  X5Z 47 
X5Z H21  H21 H  0  1 N Y N N N N ?      ?       ?      ? ? ? H21  X5Z 48 
X5Z H22  H22 H  0  1 N Y N N N N ?      ?       ?      ? ? ? H22  X5Z 49 
X5Z H23  H23 H  0  1 N Y N N N N ?      ?       ?      ? ? ? H23  X5Z 50 
X5Z H24  H24 H  0  1 N Y N N N N ?      ?       ?      ? ? ? H24  X5Z 51 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
X5Z C26  C22  SING N N 1  
X5Z C27  C23  SING N N 2  
X5Z C22  C23  DOUB N N 3  
X5Z C22  N11  SING N N 4  
X5Z C23  N12  SING N N 5  
X5Z N11  O05  SING N N 6  
X5Z N11  CO01 SING N N 7  
X5Z N12  O06  SING N N 8  
X5Z N12  CO01 SING N N 9  
X5Z CO01 N10  SING N N 10 
X5Z CO01 N09  SING N N 11 
X5Z CO01 N13  SING N N 12 
X5Z O04  N10  SING N N 13 
X5Z N10  C21  SING N N 14 
X5Z O03  N09  SING N N 15 
X5Z N09  C20  SING N N 16 
X5Z N13  N14  DOUB N N 17 
X5Z C21  C20  DOUB N N 18 
X5Z C21  C25  SING N N 19 
X5Z C20  C24  SING N N 20 
X5Z N14  N15  DOUB N N 21 
X5Z C24  H1   SING N N 22 
X5Z C24  H2   SING N N 23 
X5Z C24  H3   SING N N 24 
X5Z C25  H4   SING N N 25 
X5Z C25  H5   SING N N 26 
X5Z C25  H6   SING N N 27 
X5Z C26  H7   SING N N 28 
X5Z C26  H8   SING N N 29 
X5Z C26  H9   SING N N 30 
X5Z C27  H10  SING N N 31 
X5Z C27  H11  SING N N 32 
X5Z C27  H12  SING N N 33 
X5Z O03  H14  SING N N 34 
X5Z O04  H15  SING N N 35 
X5Z O05  H16  SING N N 36 
X5Z O06  H17  SING N N 37 
X5Z CO01 N1   SING N N 38 
X5Z N1   C2   SING Y N 39 
X5Z C2   C3   DOUB Y N 40 
X5Z C3   C4   SING Y N 41 
X5Z C4   C5   DOUB Y N 42 
X5Z C5   C6   SING Y N 43 
X5Z C6   N1   DOUB Y N 44 
X5Z C4   C7   SING N N 45 
X5Z C7   C8   DOUB N N 46 
X5Z C2   H18  SING N N 47 
X5Z C3   H19  SING N N 48 
X5Z C5   H20  SING N N 49 
X5Z C6   H21  SING N N 50 
X5Z C7   H22  SING N N 51 
X5Z C8   H23  SING N N 52 
X5Z C8   H24  SING N N 53 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
X5Z SMILES           ACDLabs              12.01 "C=Cc1cc[n+](cc1)[Co]12(\N=[N+]=[N-])(N(O)C(C)=C(C)N1O)N(O)C(C)=C(C)N2O"                                                      
X5Z InChI            InChI                1.06  "InChI=1S/C7H7N.2C4H8N2O2.Co.N3/c1-2-7-3-5-8-6-4-7;2*1-3(5-7)4(2)6-8;;1-3-2/h2-6H,1H2;2*7-8H,1-2H3;;/q;2*-2;+6;-1/b;2*4-3-;;" 
X5Z InChIKey         InChI                1.06  KKXSWROVWVQWSY-GLPMUSQESA-N                                                                                                   
X5Z SMILES_CANONICAL CACTVS               3.385 "CC1=C(C)N(O)[Co]2(N=[N+]=[N-])(N1O)(N(O)C(=C(C)N2O)C)[n+]3ccc(C=C)cc3"                                                       
X5Z SMILES           CACTVS               3.385 "CC1=C(C)N(O)[Co]2(N=[N+]=[N-])(N1O)(N(O)C(=C(C)N2O)C)[n+]3ccc(C=C)cc3"                                                       
X5Z SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC1=C(N([Co]2(N1O)(N(C(=C(N2O)C)C)O)(N=[N+]=[N-])[n+]3ccc(cc3)C=C)O)C"                                                       
X5Z SMILES           "OpenEye OEToolkits" 2.0.7 "CC1=C(N([Co]2(N1O)(N(C(=C(N2O)C)C)O)(N=[N+]=[N-])[n+]3ccc(cc3)C=C)O)C"                                                       
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
X5Z "SYSTEMATIC NAME" ACDLabs              12.01 "azidobis[N~2~,N~3~-dihydroxybut-2-ene-2,3-diaminato(2-)-kappa~2~N,N'](4-ethenylpyridine)cobalt(1+)"                                             
X5Z "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "5-azido-5-(4-ethenylpyridin-1-ium-1-yl)-2,3,7,8-tetramethyl-1,4,6,9-tetrakis(oxidanyl)-1,4,6,9-tetraza-5$l^{6}-cobaltaspiro[4.4]nona-2,7-diene" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
X5Z "Create component"   2022-10-31 RCSB 
X5Z "Modify charge"      2022-11-09 RCSB 
X5Z "Modify coordinates" 2022-11-09 RCSB 
X5Z "Modify descriptor"  2022-11-09 RCSB 
X5Z "Initial release"    2022-11-23 RCSB 
X5Z "Modify coordinates" 2024-02-07 RCSB 
# 
