data_VRZ
# 
_chem_comp.id                                    VRZ 
_chem_comp.name                                  "1-[4-(4-amino-7-cyclopentyl-7H-pyrrolo[2,3-d]pyrimidin-5-yl)phenyl]-3-benzylurea" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H26 N6 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2012-05-28 
_chem_comp.pdbx_modified_date                    2013-04-26 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        426.514 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     VRZ 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3VRZ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
VRZ CAP CAP C 0 1 N N N 8.438  -1.070 -7.524  -5.859 -2.367 1.235  CAP LIG 1  
VRZ CAN CAN C 0 1 N N N 9.794  -1.070 -8.232  -6.523 -3.641 0.684  CAN LIG 2  
VRZ CAO CAO C 0 1 N N N 9.671  -1.958 -9.465  -7.102 -3.274 -0.697 CAO LIG 3  
VRZ CAQ CAQ C 0 1 N N N 8.198  -2.324 -9.603  -6.260 -2.056 -1.151 CAQ LIG 4  
VRZ CBE CBE C 0 1 N N N 7.494  -1.989 -8.292  -6.057 -1.270 0.169  CBE LIG 5  
VRZ NBF NBF N 0 1 Y N N 6.231  -1.291 -8.628  -4.868 -0.418 0.081  NBF LIG 6  
VRZ CAM CAM C 0 1 Y N N 6.182  -0.066 -9.164  -3.596 -0.871 -0.147 CAM LIG 7  
VRZ C4  C4  C 0 1 Y N N 4.974  -1.754 -8.462  -4.870 0.944  0.208  C4  LIG 8  
VRZ N3  N3  N 0 1 Y N N 4.498  -2.931 -7.970  -5.820 1.854  0.427  N3  LIG 9  
VRZ C2  C2  C 0 1 Y N N 3.176  -3.166 -7.919  -5.521 3.132  0.504  C2  LIG 10 
VRZ N1  N1  N 0 1 Y N N 2.293  -2.251 -8.348  -4.287 3.586  0.371  N1  LIG 11 
VRZ C6  C6  C 0 1 Y N N 2.709  -1.063 -8.849  -3.272 2.755  0.150  C6  LIG 12 
VRZ NAA NAA N 0 1 N N N 1.778  -0.170 -9.270  -1.982 3.233  0.012  NAA LIG 13 
VRZ C5  C5  C 0 1 Y N N 4.074  -0.788 -8.921  -3.543 1.383  0.061  C5  LIG 14 
VRZ CBB CBB C 0 1 Y N N 4.851  0.287  -9.360  -2.738 0.177  -0.175 CBB LIG 15 
VRZ CAZ CAZ C 0 1 Y N N 4.511  1.624  -9.932  -1.273 0.119  -0.394 CAZ LIG 16 
VRZ CAK CAK C 0 1 Y N N 5.277  2.067  -10.994 -0.674 0.952  -1.338 CAK LIG 17 
VRZ CAI CAI C 0 1 Y N N 5.063  3.313  -11.561 0.690  0.900  -1.536 CAI LIG 18 
VRZ CAJ CAJ C 0 1 Y N N 3.556  2.477  -9.383  -0.490 -0.766 0.347  CAJ LIG 19 
VRZ CAH CAH C 0 1 Y N N 3.342  3.733  -9.954  0.872  -0.819 0.140  CAH LIG 20 
VRZ CAY CAY C 0 1 Y N N 4.087  4.155  -11.050 1.467  0.016  -0.797 CAY LIG 21 
VRZ NAV NAV N 0 1 N N N 3.931  5.422  -11.650 2.851  -0.036 -1.001 NAV LIG 22 
VRZ CAW CAW C 0 1 N N N 2.826  6.164  -11.639 3.677  -0.270 0.038  CAW LIG 23 
VRZ OAB OAB O 0 1 N N N 1.812  5.787  -11.091 3.217  -0.520 1.136  OAB LIG 24 
VRZ NAU NAU N 0 1 N N N 2.801  7.352  -12.240 5.012  -0.228 -0.140 NAU LIG 25 
VRZ CAR CAR C 0 1 N N N 1.583  8.149  -12.236 5.910  -0.483 0.989  CAR LIG 26 
VRZ CAX CAX C 0 1 Y N N 1.720  9.613  -12.579 7.340  -0.377 0.528  CAX LIG 27 
VRZ CAF CAF C 0 1 Y N N 1.365  10.040 -13.849 7.996  -1.495 0.046  CAF LIG 28 
VRZ CAD CAD C 0 1 Y N N 1.460  11.384 -14.180 9.308  -1.397 -0.377 CAD LIG 29 
VRZ CAC CAC C 0 1 Y N N 1.896  12.306 -13.238 9.965  -0.182 -0.319 CAC LIG 30 
VRZ CAE CAE C 0 1 Y N N 2.242  11.884 -11.960 9.309  0.936  0.162  CAE LIG 31 
VRZ CAG CAG C 0 1 Y N N 2.148  10.536 -11.632 7.995  0.839  0.581  CAG LIG 32 
VRZ H1  H1  H 0 1 N N N 8.029  -0.049 -7.505  -6.337 -2.071 2.169  H1  LIG 33 
VRZ H2  H2  H 0 1 N N N 8.557  -1.437 -6.494  -4.796 -2.541 1.399  H2  LIG 34 
VRZ H3  H3  H 0 1 N N N 10.568 -1.468 -7.559  -5.782 -4.433 0.580  H3  LIG 35 
VRZ H4  H4  H 0 1 N N N 10.060 -0.046 -8.533  -7.322 -3.964 1.352  H4  LIG 36 
VRZ H5  H5  H 0 1 N N N 10.276 -2.868 -9.338  -6.980 -4.103 -1.395 H5  LIG 37 
VRZ H6  H6  H 0 1 N N N 10.011 -1.414 -10.358 -8.154 -3.003 -0.610 H6  LIG 38 
VRZ H7  H7  H 0 1 N N N 7.747  -1.748 -10.425 -5.303 -2.378 -1.559 H7  LIG 39 
VRZ H8  H8  H 0 1 N N N 8.100  -3.399 -9.813  -6.809 -1.456 -1.877 H8  LIG 40 
VRZ H9  H9  H 0 1 N N N 7.298  -2.906 -7.716  -6.939 -0.672 0.397  H9  LIG 41 
VRZ H10 H10 H 0 1 N N N 7.037  0.549  -9.405  -3.320 -1.906 -0.284 H10 LIG 42 
VRZ H11 H11 H 0 1 N N N 2.818  -4.106 -7.526  -6.316 3.840  0.682  H11 LIG 43 
VRZ H12 H12 H 0 1 N N N 0.864  -0.553 -9.136  -1.808 4.185  0.076  H12 LIG 44 
VRZ H13 H13 H 0 1 N N N 1.865  0.676  -8.743  -1.250 2.616  -0.149 H13 LIG 45 
VRZ H14 H14 H 0 1 N N N 6.056  1.431  -11.389 -1.278 1.639  -1.913 H14 LIG 46 
VRZ H15 H15 H 0 1 N N N 5.659  3.630  -12.404 1.154  1.545  -2.267 H15 LIG 47 
VRZ H16 H16 H 0 1 N N N 2.984  2.168  -8.520  -0.951 -1.410 1.081  H16 LIG 48 
VRZ H17 H17 H 0 1 N N N 2.588  4.385  -9.539  1.478  -1.504 0.714  H17 LIG 49 
VRZ H18 H18 H 0 1 N N N 4.725  5.798  -12.128 3.215  0.097  -1.890 H18 LIG 50 
VRZ H19 H19 H 0 1 N N N 1.147  8.084  -11.228 5.725  0.251  1.773  H19 LIG 51 
VRZ H20 H20 H 0 1 N N N 1.015  9.327  -14.581 7.483  -2.444 0.001  H20 LIG 52 
VRZ H21 H21 H 0 1 N N N 1.194  11.714 -15.173 9.821  -2.270 -0.752 H21 LIG 53 
VRZ H22 H22 H 0 1 N N N 1.966  13.352 -13.499 10.991 -0.106 -0.648 H22 LIG 54 
VRZ H23 H23 H 0 1 N N N 2.582  12.599 -11.226 9.822  1.885  0.208  H23 LIG 55 
VRZ H24 H24 H 0 1 N N N 2.409  10.205 -10.638 7.481  1.713  0.953  H24 LIG 56 
VRZ H25 H25 H 0 1 N N N 3.621  7.698  -12.695 5.378  -0.030 -1.015 H25 LIG 57 
VRZ H26 H26 H 0 1 N N N 0.891  7.701  -12.964 5.727  -1.485 1.380  H26 LIG 58 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
VRZ CAD CAF DOUB Y N 1  
VRZ CAD CAC SING Y N 2  
VRZ CAF CAX SING Y N 3  
VRZ CAC CAE DOUB Y N 4  
VRZ CAX CAR SING N N 5  
VRZ CAX CAG DOUB Y N 6  
VRZ NAU CAR SING N N 7  
VRZ NAU CAW SING N N 8  
VRZ CAE CAG SING Y N 9  
VRZ NAV CAW SING N N 10 
VRZ NAV CAY SING N N 11 
VRZ CAW OAB DOUB N N 12 
VRZ CAI CAY DOUB Y N 13 
VRZ CAI CAK SING Y N 14 
VRZ CAY CAH SING Y N 15 
VRZ CAK CAZ DOUB Y N 16 
VRZ CAH CAJ DOUB Y N 17 
VRZ CAZ CAJ SING Y N 18 
VRZ CAZ CBB SING N N 19 
VRZ CAQ CAO SING N N 20 
VRZ CAQ CBE SING N N 21 
VRZ CAO CAN SING N N 22 
VRZ CBB CAM DOUB Y N 23 
VRZ CBB C5  SING Y N 24 
VRZ NAA C6  SING N N 25 
VRZ CAM NBF SING Y N 26 
VRZ C5  C6  SING Y N 27 
VRZ C5  C4  DOUB Y N 28 
VRZ C6  N1  DOUB Y N 29 
VRZ NBF C4  SING Y N 30 
VRZ NBF CBE SING N N 31 
VRZ C4  N3  SING Y N 32 
VRZ N1  C2  SING Y N 33 
VRZ CBE CAP SING N N 34 
VRZ CAN CAP SING N N 35 
VRZ N3  C2  DOUB Y N 36 
VRZ CAP H1  SING N N 37 
VRZ CAP H2  SING N N 38 
VRZ CAN H3  SING N N 39 
VRZ CAN H4  SING N N 40 
VRZ CAO H5  SING N N 41 
VRZ CAO H6  SING N N 42 
VRZ CAQ H7  SING N N 43 
VRZ CAQ H8  SING N N 44 
VRZ CBE H9  SING N N 45 
VRZ CAM H10 SING N N 46 
VRZ C2  H11 SING N N 47 
VRZ NAA H12 SING N N 48 
VRZ NAA H13 SING N N 49 
VRZ CAK H14 SING N N 50 
VRZ CAI H15 SING N N 51 
VRZ CAJ H16 SING N N 52 
VRZ CAH H17 SING N N 53 
VRZ NAV H18 SING N N 54 
VRZ CAR H19 SING N N 55 
VRZ CAF H20 SING N N 56 
VRZ CAD H21 SING N N 57 
VRZ CAC H22 SING N N 58 
VRZ CAE H23 SING N N 59 
VRZ CAG H24 SING N N 60 
VRZ NAU H25 SING N N 61 
VRZ CAR H26 SING N N 62 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
VRZ SMILES           ACDLabs              12.01 "O=C(NCc1ccccc1)Nc5ccc(c3c2c(ncnc2n(c3)C4CCCC4)N)cc5"                                                                                                                                        
VRZ InChI            InChI                1.03  "InChI=1S/C25H26N6O/c26-23-22-21(15-31(20-8-4-5-9-20)24(22)29-16-28-23)18-10-12-19(13-11-18)30-25(32)27-14-17-6-2-1-3-7-17/h1-3,6-7,10-13,15-16,20H,4-5,8-9,14H2,(H2,26,28,29)(H2,27,30,32)" 
VRZ InChIKey         InChI                1.03  URGKVSPXHKAWNJ-UHFFFAOYSA-N                                                                                                                                                                  
VRZ SMILES_CANONICAL CACTVS               3.370 "Nc1ncnc2n(cc(c3ccc(NC(=O)NCc4ccccc4)cc3)c12)C5CCCC5"                                                                                                                                        
VRZ SMILES           CACTVS               3.370 "Nc1ncnc2n(cc(c3ccc(NC(=O)NCc4ccccc4)cc3)c12)C5CCCC5"                                                                                                                                        
VRZ SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1ccc(cc1)CNC(=O)Nc2ccc(cc2)c3cn(c4c3c(ncn4)N)C5CCCC5"                                                                                                                                      
VRZ SMILES           "OpenEye OEToolkits" 1.7.6 "c1ccc(cc1)CNC(=O)Nc2ccc(cc2)c3cn(c4c3c(ncn4)N)C5CCCC5"                                                                                                                                      
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
VRZ "SYSTEMATIC NAME" ACDLabs              12.01 "1-[4-(4-amino-7-cyclopentyl-7H-pyrrolo[2,3-d]pyrimidin-5-yl)phenyl]-3-benzylurea"       
VRZ "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "1-[4-(4-azanyl-7-cyclopentyl-pyrrolo[2,3-d]pyrimidin-5-yl)phenyl]-3-(phenylmethyl)urea" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
VRZ "Create component" 2012-05-28 PDBJ 
VRZ "Initial release"  2013-05-01 RCSB 
# 
