data_RBZ
# 
_chem_comp.id                                    RBZ 
_chem_comp.name                                  "ALPHA-RIBAZOLE-5'-PHOSPHATE" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C14 H19 N2 O7 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2002-03-19 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         RIC 
_chem_comp.formula_weight                        358.284 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     RBZ 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1L4E 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
RBZ N3     N3   N 0 1 Y N N 56.354 41.750 14.085 2.481  1.518  -1.756 N3     RBZ 1  
RBZ N1     N1   N 0 1 Y N N 56.802 40.986 11.976 1.534  0.283  -0.226 N1     RBZ 2  
RBZ C2     C2   C 0 1 Y N N 55.976 40.970 13.065 1.346  1.035  -1.345 C2     RBZ 3  
RBZ C7A    C7A  C 0 1 Y N N 57.825 41.896 12.389 2.884  0.311  0.064  C7A    RBZ 4  
RBZ C3A    C3A  C 0 1 Y N N 57.527 42.364 13.693 3.478  1.109  -0.929 C3A    RBZ 5  
RBZ C4     C4   C 0 1 Y N N 58.377 43.299 14.355 4.857  1.327  -0.901 C4     RBZ 6  
RBZ C5     C5   C 0 1 Y N N 59.546 43.773 13.703 5.616  0.765  0.087  C5     RBZ 7  
RBZ C6     C6   C 0 1 Y N N 59.873 43.293 12.357 5.030  -0.027 1.065  C6     RBZ 8  
RBZ C7     C7   C 0 1 Y N N 59.012 42.368 11.719 3.670  -0.252 1.060  C7     RBZ 9  
RBZ C8     C8   C 0 1 N N N 60.446 44.783 14.425 7.103  1.003  0.112  C8     RBZ 10 
RBZ C9     C9   C 0 1 N N N 61.115 43.771 11.627 5.886  -0.637 2.145  C9     RBZ 11 
RBZ P      P    P 0 1 N N N 59.742 39.317 6.169  -5.087 0.823  0.330  P      RBZ 12 
RBZ O1P    O1P  O 0 1 N N N 59.515 38.062 5.365  -5.070 0.622  1.797  O1P    RBZ 13 
RBZ O2P    O2P  O 0 1 N N N 59.889 40.482 5.249  -5.666 2.288  -0.004 O2P    RBZ 14 
RBZ O3P    O3P  O 0 1 N N N 60.974 39.186 6.976  -6.023 -0.293 -0.354 O3P    RBZ 15 
RBZ "O5'"  O5*  O 0 1 N N N 58.487 39.572 7.112  -3.589 0.695  -0.246 "O5'"  RBZ 16 
RBZ "C5'"  C5*  C 0 1 N N N 58.103 38.577 8.086  -3.089 -0.574 0.182  "C5'"  RBZ 17 
RBZ "C4'"  C4*  C 0 1 N N R 58.411 38.995 9.527  -1.661 -0.761 -0.334 "C4'"  RBZ 18 
RBZ "O4'"  O4*  O 0 1 N N N 57.884 40.325 9.884  -0.777 0.183  0.291  "O4'"  RBZ 19 
RBZ "C3'"  C3*  C 0 1 N N S 57.834 38.124 10.612 -1.118 -2.154 0.071  "C3'"  RBZ 20 
RBZ "O3'"  O3*  O 0 1 N N N 58.618 38.161 11.823 -1.482 -3.148 -0.890 "O3'"  RBZ 21 
RBZ "C2'"  C2*  C 0 1 N N R 56.442 38.736 10.750 0.414  -1.891 0.054  "C2'"  RBZ 22 
RBZ "O2'"  O2*  O 0 1 N N N 55.872 38.296 11.988 0.940  -2.032 -1.267 "O2'"  RBZ 23 
RBZ "C1'"  C1*  C 0 1 N N S 56.686 40.248 10.663 0.498  -0.425 0.529  "C1'"  RBZ 24 
RBZ H2     H2   H 0 1 N N N 55.057 40.362 13.118 0.392  1.206  -1.821 H2     RBZ 25 
RBZ H4     H4   H 0 1 N N N 58.131 43.655 15.370 5.324  1.939  -1.659 H4     RBZ 26 
RBZ H7     H7   H 0 1 N N N 59.265 42.017 10.705 3.219  -0.866 1.825  H7     RBZ 27 
RBZ H81    1H8  H 0 1 N N N 60.735 44.361 15.416 7.319  1.894  0.702  H81    RBZ 28 
RBZ H82    2H8  H 0 1 N N N 61.364 45.155 13.913 7.602  0.143  0.559  H82    RBZ 29 
RBZ H83    3H8  H 0 1 N N N 59.827 45.658 14.732 7.466  1.145  -0.906 H83    RBZ 30 
RBZ H91    1H9  H 0 1 N N N 61.995 43.578 12.284 6.232  -1.619 1.822  H91    RBZ 31 
RBZ H92    2H9  H 0 1 N N N 61.364 43.406 10.603 6.745  0.007  2.335  H92    RBZ 32 
RBZ H93    3H9  H 0 1 N N N 61.089 44.885 11.598 5.300  -0.740 3.058  H93    RBZ 33 
RBZ HOP2   2HOP H 0 0 N N N 60.032 41.273 5.756  -6.562 2.323  0.358  HOP2   RBZ 34 
RBZ HOP3   3HOP H 0 0 N N N 61.117 39.977 7.483  -6.006 -0.126 -1.307 HOP3   RBZ 35 
RBZ "H5'1" 1H5* H 0 0 N N N 58.567 37.591 7.851  -3.725 -1.367 -0.212 "H5'1" RBZ 36 
RBZ "H5'2" 2H5* H 0 0 N N N 57.028 38.305 7.973  -3.090 -0.616 1.272  "H5'2" RBZ 37 
RBZ "H4'"  H4*  H 0 1 N N N 59.524 38.935 9.501  -1.634 -0.644 -1.418 "H4'"  RBZ 38 
RBZ "H3'"  H3*  H 0 1 N N N 57.818 37.033 10.385 -1.457 -2.433 1.068  "H3'"  RBZ 39 
RBZ "HO'3" 3HO* H 0 0 N N N 58.254 37.612 12.507 -1.114 -3.986 -0.578 "HO'3" RBZ 40 
RBZ "H2'"  H2*  H 0 1 N N N 55.708 38.433 9.967  0.929  -2.556 0.748  "H2'"  RBZ 41 
RBZ "HO'2" 2HO* H 0 0 N N N 55.006 38.677 12.074 0.775  -2.946 -1.537 "HO'2" RBZ 42 
RBZ "H1'"  H1*  H 0 1 N N N 55.805 40.766 10.218 0.730  -0.393 1.594  "H1'"  RBZ 43 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
RBZ N3    C2     DOUB Y N 1  
RBZ N3    C3A    SING Y N 2  
RBZ N1    C2     SING Y N 3  
RBZ N1    C7A    SING Y N 4  
RBZ N1    "C1'"  SING N N 5  
RBZ C2    H2     SING N N 6  
RBZ C7A   C3A    DOUB Y N 7  
RBZ C7A   C7     SING Y N 8  
RBZ C3A   C4     SING Y N 9  
RBZ C4    C5     DOUB Y N 10 
RBZ C4    H4     SING N N 11 
RBZ C5    C6     SING Y N 12 
RBZ C5    C8     SING N N 13 
RBZ C6    C7     DOUB Y N 14 
RBZ C6    C9     SING N N 15 
RBZ C7    H7     SING N N 16 
RBZ C8    H81    SING N N 17 
RBZ C8    H82    SING N N 18 
RBZ C8    H83    SING N N 19 
RBZ C9    H91    SING N N 20 
RBZ C9    H92    SING N N 21 
RBZ C9    H93    SING N N 22 
RBZ P     O1P    DOUB N N 23 
RBZ P     O2P    SING N N 24 
RBZ P     O3P    SING N N 25 
RBZ P     "O5'"  SING N N 26 
RBZ O2P   HOP2   SING N N 27 
RBZ O3P   HOP3   SING N N 28 
RBZ "O5'" "C5'"  SING N N 29 
RBZ "C5'" "C4'"  SING N N 30 
RBZ "C5'" "H5'1" SING N N 31 
RBZ "C5'" "H5'2" SING N N 32 
RBZ "C4'" "O4'"  SING N N 33 
RBZ "C4'" "C3'"  SING N N 34 
RBZ "C4'" "H4'"  SING N N 35 
RBZ "O4'" "C1'"  SING N N 36 
RBZ "C3'" "O3'"  SING N N 37 
RBZ "C3'" "C2'"  SING N N 38 
RBZ "C3'" "H3'"  SING N N 39 
RBZ "O3'" "HO'3" SING N N 40 
RBZ "C2'" "O2'"  SING N N 41 
RBZ "C2'" "C1'"  SING N N 42 
RBZ "C2'" "H2'"  SING N N 43 
RBZ "O2'" "HO'2" SING N N 44 
RBZ "C1'" "H1'"  SING N N 45 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
RBZ SMILES           ACDLabs              10.04 "O=P(O)(O)OCC3OC(n2cnc1cc(c(cc12)C)C)C(O)C3O"                                                                                                                    
RBZ SMILES_CANONICAL CACTVS               3.341 "Cc1cc2ncn([C@H]3O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]3O)c2cc1C"                                                                                                   
RBZ SMILES           CACTVS               3.341 "Cc1cc2ncn([CH]3O[CH](CO[P](O)(O)=O)[CH](O)[CH]3O)c2cc1C"                                                                                                        
RBZ SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "Cc1cc2c(cc1C)n(cn2)[C@@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)O)O)O"                                                                                               
RBZ SMILES           "OpenEye OEToolkits" 1.5.0 "Cc1cc2c(cc1C)n(cn2)C3C(C(C(O3)COP(=O)(O)O)O)O"                                                                                                                  
RBZ InChI            InChI                1.03  "InChI=1S/C14H19N2O7P/c1-7-3-9-10(4-8(7)2)16(6-15-9)14-13(18)12(17)11(23-14)5-22-24(19,20)21/h3-4,6,11-14,17-18H,5H2,1-2H3,(H2,19,20,21)/t11-,12-,13-,14+/m1/s1" 
RBZ InChIKey         InChI                1.03  ZMRGXEJKZPRBPJ-SYQHCUMBSA-N                                                                                                                                      
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
RBZ "SYSTEMATIC NAME" ACDLabs              10.04 "5,6-dimethyl-1-(5-O-phosphono-alpha-D-ribofuranosyl)-1H-benzimidazole"                                  
RBZ "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,4R,5S)-5-(5,6-dimethylbenzimidazol-1-yl)-3,4-dihydroxy-oxolan-2-yl]methyl dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
RBZ "Create component"  2002-03-19 RCSB 
RBZ "Modify descriptor" 2011-06-04 RCSB 
# 
