data_QRZ
#

_chem_comp.id                                   QRZ
_chem_comp.name                                 "[(2~{R},3~{S},4~{R},5~{R})-5-[6-carbamothioyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C10 H14 N3 O9 P S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-07-31
_chem_comp.pdbx_modified_date                   2022-02-18
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       383.272
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    QRZ
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6ZX3
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
QRZ  C2     C1   C  0  1  N  N  N  15.617  10.214  38.008   1.775  -1.281  -1.202  C2     QRZ   1  
QRZ  C3     C2   C  0  1  N  N  N  14.278   9.788  34.550   3.248   0.826   1.482  C3     QRZ   2  
QRZ  O3P    O1   O  0  1  N  N  N  13.379  12.600  42.880  -4.634  -2.091  -0.347  O3P    QRZ   3  
QRZ  P      P1   P  0  1  N  N  N  12.223  13.330  42.246  -4.724  -0.731   0.509  P      QRZ   4  
QRZ  O1P    O2   O  0  1  N  N  N  12.553  14.781  41.925  -5.738   0.164  -0.093  O1P    QRZ   5  
QRZ  O2P    O3   O  0  1  N  N  N  10.940  13.200  43.025  -5.145  -1.077   2.024  O2P    QRZ   6  
QRZ  "O5'"  O4   O  0  1  N  N  N  11.853  12.633  40.860  -3.290   0.002   0.504  "O5'"  QRZ   7  
QRZ  "C5'"  C3   C  0  1  N  N  N  12.843  12.370  39.884  -2.690   0.529  -0.681  "C5'"  QRZ   8  
QRZ  "C4'"  C4   C  0  1  N  N  R  12.137  11.842  38.650  -1.338   1.155  -0.332  "C4'"  QRZ   9  
QRZ  "C3'"  C5   C  0  1  N  N  S  11.518  10.471  38.837  -0.726   1.842  -1.574  "C3'"  QRZ  10  
QRZ  "O3'"  O5   O  0  1  N  N  N  10.273  10.362  38.109  -0.980   3.248  -1.544  "O3'"  QRZ  11  
QRZ  "C2'"  C6   C  0  1  N  N  R  12.573   9.525  38.315   0.788   1.559  -1.452  "C2'"  QRZ  12  
QRZ  "O2'"  O6   O  0  1  N  N  N  11.925   8.364  37.830   1.518   2.782  -1.345  "O2'"  QRZ  13  
QRZ  "O4'"  O7   O  0  1  N  N  N  13.059  11.714  37.565  -0.387   0.129   0.028  "O4'"  QRZ  14  
QRZ  "C1'"  C7   C  0  1  N  N  R  13.239  10.338  37.198   0.912   0.735  -0.151  "C1'"  QRZ  15  
QRZ  N1     N1   N  0  1  N  N  N  14.683  10.091  36.977   1.941  -0.298  -0.298  N1     QRZ  16  
QRZ  C6     C8   C  0  1  N  N  N  15.153   9.668  35.717   3.071  -0.256   0.491  C6     QRZ  17  
QRZ  C5     C9   C  0  1  N  N  N  16.481   9.315  35.521   4.022  -1.219   0.349  C5     QRZ  18  
QRZ  C4     C10  C  0  1  N  N  N  17.350   9.484  36.583   3.822  -2.245  -0.613  C4     QRZ  19  
QRZ  O4     O8   O  0  1  N  N  N  18.595   9.287  36.493   4.657  -3.118  -0.760  O4     QRZ  20  
QRZ  N3     N2   N  0  1  N  N  N  16.903   9.926  37.781   2.699  -2.246  -1.357  N3     QRZ  21  
QRZ  O2     O9   O  0  1  N  N  N  15.265  10.639  39.123   0.770  -1.300  -1.887  O2     QRZ  22  
QRZ  S4     S1   S  0  1  N  N  N  13.982  11.166  33.798   2.573   0.671   3.048  S4     QRZ  23  
QRZ  N5     N3   N  0  1  N  N  N  13.852   8.599  34.130   3.941   1.934   1.154  N5     QRZ  24  
QRZ  H1     H1   H  0  1  N  N  N  14.118  13.190  42.966  -3.987  -2.726  -0.010  H1     QRZ  25  
QRZ  H2     H2   H  0  1  N  N  N  10.570  14.062  43.173  -6.000  -1.521   2.103  H2     QRZ  26  
QRZ  H3     H3   H  0  1  N  N  N  13.552  11.619  40.261  -2.543  -0.275  -1.402  H3     QRZ  27  
QRZ  H4     H4   H  0  1  N  N  N  13.385  13.296  39.640  -3.341   1.289  -1.111  H4     QRZ  28  
QRZ  H5     H5   H  0  1  N  N  N  11.340  12.549  38.376  -1.451   1.872   0.481  H5     QRZ  29  
QRZ  H6     H6   H  0  1  N  N  N  11.354  10.285  39.909  -1.125   1.402  -2.488  H6     QRZ  30  
QRZ  H7     H7   H  0  1  N  N  N   9.640  10.972  38.469  -0.618   3.729  -2.300  H7     QRZ  31  
QRZ  H8     H8   H  0  1  N  N  N  13.305   9.290  39.102   1.138   0.979  -2.306  H8     QRZ  32  
QRZ  H9     H9   H  0  1  N  N  N  11.529   7.895  38.555   1.426   3.364  -2.112  H9     QRZ  33  
QRZ  H10    H10  H  0  1  N  N  N  12.699  10.137  36.261   1.146   1.387   0.690  H10    QRZ  34  
QRZ  H11    H11  H  0  1  N  N  N  16.823   8.923  34.574   4.914  -1.203   0.957  H11    QRZ  35  
QRZ  H12    H12  H  0  1  N  N  N  17.560  10.042  38.526   2.558  -2.945  -2.015  H12    QRZ  36  
QRZ  H13    H13  H  0  1  N  N  N  13.309   8.529  33.293   4.324   2.021   0.267  H13    QRZ  37  
QRZ  H14    H14  H  0  1  N  N  N  14.075   7.775  34.651   4.057   2.644   1.804  H14    QRZ  38  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
QRZ  S4     C3     DOUB  N  N   1  
QRZ  N5     C3     SING  N  N   2  
QRZ  C3     C6     SING  N  N   3  
QRZ  C5     C6     DOUB  N  N   4  
QRZ  C5     C4     SING  N  N   5  
QRZ  C6     N1     SING  N  N   6  
QRZ  O4     C4     DOUB  N  N   7  
QRZ  C4     N3     SING  N  N   8  
QRZ  N1     "C1'"  SING  N  N   9  
QRZ  N1     C2     SING  N  N  10  
QRZ  "C1'"  "O4'"  SING  N  N  11  
QRZ  "C1'"  "C2'"  SING  N  N  12  
QRZ  "O4'"  "C4'"  SING  N  N  13  
QRZ  N3     C2     SING  N  N  14  
QRZ  "O2'"  "C2'"  SING  N  N  15  
QRZ  C2     O2     DOUB  N  N  16  
QRZ  "O3'"  "C3'"  SING  N  N  17  
QRZ  "C2'"  "C3'"  SING  N  N  18  
QRZ  "C4'"  "C3'"  SING  N  N  19  
QRZ  "C4'"  "C5'"  SING  N  N  20  
QRZ  "C5'"  "O5'"  SING  N  N  21  
QRZ  "O5'"  P      SING  N  N  22  
QRZ  O1P    P      DOUB  N  N  23  
QRZ  P      O3P    SING  N  N  24  
QRZ  P      O2P    SING  N  N  25  
QRZ  O3P    H1     SING  N  N  26  
QRZ  O2P    H2     SING  N  N  27  
QRZ  "C5'"  H3     SING  N  N  28  
QRZ  "C5'"  H4     SING  N  N  29  
QRZ  "C4'"  H5     SING  N  N  30  
QRZ  "C3'"  H6     SING  N  N  31  
QRZ  "O3'"  H7     SING  N  N  32  
QRZ  "C2'"  H8     SING  N  N  33  
QRZ  "O2'"  H9     SING  N  N  34  
QRZ  "C1'"  H10    SING  N  N  35  
QRZ  C5     H11    SING  N  N  36  
QRZ  N3     H12    SING  N  N  37  
QRZ  N5     H13    SING  N  N  38  
QRZ  N5     H14    SING  N  N  39  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
QRZ  InChI             InChI                 1.03   "InChI=1S/C10H14N3O9PS/c11-8(24)3-1-5(14)12-10(17)13(3)9-7(16)6(15)4(22-9)2-21-23(18,19)20/h1,4,6-7,9,15-16H,2H2,(H2,11,24)(H,12,14,17)(H2,18,19,20)/t4-,6-,7-,9-/m1/s1"  
QRZ  InChIKey          InChI                 1.03   FOTDNYQDMJFRSX-FJGDRVTGSA-N  
QRZ  SMILES_CANONICAL  CACTVS                3.385  "NC(=S)C1=CC(=O)NC(=O)N1[C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]2O"  
QRZ  SMILES            CACTVS                3.385  "NC(=S)C1=CC(=O)NC(=O)N1[CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH]2O"  
QRZ  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C1=C(N(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)O)C(=S)N"  
QRZ  SMILES            "OpenEye OEToolkits"  2.0.7  "C1=C(N(C(=O)NC1=O)C2C(C(C(O2)COP(=O)(O)O)O)O)C(=S)N"  
#
_pdbx_chem_comp_identifier.comp_id          QRZ
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "[(2~{R},3~{S},4~{R},5~{R})-5-[6-carbamothioyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
QRZ  "Create component"  2020-07-31  PDBE  
QRZ  "Initial release"   2022-02-23  RCSB  
##
