data_O3Z
# 
_chem_comp.id                                    O3Z 
_chem_comp.name                                  "(2~{R})-2-[[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylamino]-3-oxidanyl-propanoic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C11 H17 N2 O8 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2020-01-28 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        336.235 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     O3Z 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6TI4 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
O3Z C3  C1  C 0 1 Y N N N N N -11.109 -39.391 1.222  1.197  2.744  -0.315 C3  O3Z 1  
O3Z C4  C2  C 0 1 Y N N N N N -10.834 -40.729 1.440  0.621  1.493  -0.512 C4  O3Z 2  
O3Z C6  C3  C 0 1 Y N N N N N -11.109 -41.078 -0.954 -1.398 2.368  0.415  C6  O3Z 3  
O3Z C2  C4  C 0 1 Y N N N N N -11.368 -38.924 -0.060 0.433  3.757  0.245  C2  O3Z 4  
O3Z OXT O1  O 0 1 N N N Y N Y -7.658  -38.448 5.364  4.096  -1.245 1.408  OXT O3Z 5  
O3Z C   C5  C 0 1 N N N Y N Y -8.470  -39.294 5.128  3.976  -1.857 0.373  C   O3Z 6  
O3Z O   O2  O 0 1 N N N Y N Y -9.527  -39.263 5.727  4.827  -2.852 0.079  O   O3Z 7  
O3Z CA  C6  C 0 1 N N R Y N N -8.045  -40.333 4.102  2.869  -1.504 -0.587 CA  O3Z 8  
O3Z CB  C7  C 0 1 N N N N N N -7.791  -41.554 4.923  1.962  -2.719 -0.789 CB  O3Z 9  
O3Z OG  O3  O 0 1 N N N N N N -8.992  -42.267 5.279  1.491  -3.178 0.479  OG  O3Z 10 
O3Z N   N1  N 0 1 N N N Y Y N -8.995  -40.478 2.950  2.082  -0.391 -0.039 N   O3Z 11 
O3Z C4A C8  C 0 1 N N N N N N -10.419 -41.095 2.887  1.418  0.362  -1.111 C4A O3Z 12 
O3Z O3  O4  O 0 1 N N N N N N -11.098 -38.564 2.286  2.492  2.969  -0.661 O3  O3Z 13 
O3Z C2A C9  C 0 1 N N N N N N -11.689 -37.499 -0.226 1.043  5.117  0.464  C2A O3Z 14 
O3Z N1  N2  N 0 1 Y N N N N N -11.392 -39.755 -1.134 -0.822 3.541  0.588  N1  O3Z 15 
O3Z C5  C10 C 0 1 Y N N N N N -10.811 -41.565 0.336  -0.702 1.311  -0.143 C5  O3Z 16 
O3Z C5A C11 C 0 1 N N N N N N -10.433 -42.957 0.652  -1.370 -0.025 -0.335 C5A O3Z 17 
O3Z O4P O5  O 0 1 N N N N N N -10.532 -43.904 -0.332 -2.719 0.045  0.133  O4P O3Z 18 
O3Z P   P1  P 0 1 N N N N N N -10.238 -45.442 0.211  -3.731 -1.206 0.081  P   O3Z 19 
O3Z O3P O6  O 0 1 N N N N N N -9.696  -45.935 -1.123 -3.123 -2.362 0.776  O3P O3Z 20 
O3Z O1P O7  O 0 1 N N N N N N -9.180  -45.549 1.371  -5.113 -0.808 0.806  O1P O3Z 21 
O3Z O2P O8  O 0 1 N N N N N N -11.598 -46.158 0.487  -4.024 -1.595 -1.454 O2P O3Z 22 
O3Z H1  H1  H 0 1 N N N N N N -11.113 -41.751 -1.798 -2.426 2.230  0.713  H1  O3Z 23 
O3Z H2  H2  H 0 1 N N N Y N Y -9.532  -38.523 6.322  5.521  -3.042 0.725  H2  O3Z 24 
O3Z H3  H3  H 0 1 N N N Y N N -7.079  -40.005 3.691  3.299  -1.208 -1.544 H3  O3Z 25 
O3Z H4  H4  H 0 1 N N N N N N -7.141  -42.231 4.349  1.113  -2.439 -1.413 H4  O3Z 26 
O3Z H5  H5  H 0 1 N N N N N N -7.279  -41.251 5.848  2.524  -3.515 -1.278 H5  O3Z 27 
O3Z H6  H6  H 0 1 N N N N N N -8.766  -43.030 5.798  0.909  -3.949 0.427  H6  O3Z 28 
O3Z H7  H7  H 0 1 N N N Y Y N -8.476  -40.999 2.273  2.657  0.215  0.526  H7  O3Z 29 
O3Z H9  H9  H 0 1 N N N N N N -11.091 -40.638 3.628  0.750  -0.301 -1.661 H9  O3Z 30 
O3Z H10 H10 H 0 1 N N N N N N -10.395 -42.184 3.037  2.168  0.766  -1.790 H10 O3Z 31 
O3Z H11 H11 H 0 1 N N N N N N -10.904 -39.061 3.072  2.608  3.280  -1.569 H11 O3Z 32 
O3Z H12 H12 H 0 1 N N N N N N -11.921 -37.295 -1.282 0.884  5.733  -0.421 H12 O3Z 33 
O3Z H13 H13 H 0 1 N N N N N N -12.560 -37.244 0.396  0.573  5.592  1.326  H13 O3Z 34 
O3Z H14 H14 H 0 1 N N N N N N -10.827 -36.891 0.084  2.112  5.011  0.646  H14 O3Z 35 
O3Z H15 H15 H 0 1 N N N N N N -11.074 -43.286 1.484  -1.367 -0.284 -1.394 H15 O3Z 36 
O3Z H16 H16 H 0 1 N N N N N N -9.384  -42.941 0.982  -0.830 -0.786 0.227  H16 O3Z 37 
O3Z H17 H17 H 0 1 N N N N N N -8.370  -45.910 1.029  -5.771 -1.516 0.813  H17 O3Z 38 
O3Z H18 H18 H 0 1 N N N N N N -11.798 -46.746 -0.232 -4.424 -0.883 -1.971 H18 O3Z 39 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
O3Z N1  C6  DOUB Y N 1  
O3Z N1  C2  SING Y N 2  
O3Z O3P P   DOUB N N 3  
O3Z C6  C5  SING Y N 4  
O3Z O4P P   SING N N 5  
O3Z O4P C5A SING N N 6  
O3Z C2A C2  SING N N 7  
O3Z C2  C3  DOUB Y N 8  
O3Z P   O2P SING N N 9  
O3Z P   O1P SING N N 10 
O3Z C5  C5A SING N N 11 
O3Z C5  C4  DOUB Y N 12 
O3Z C3  C4  SING Y N 13 
O3Z C3  O3  SING N N 14 
O3Z C4  C4A SING N N 15 
O3Z C4A N   SING N N 16 
O3Z N   CA  SING N N 17 
O3Z CA  CB  SING N N 18 
O3Z CA  C   SING N N 19 
O3Z CB  OG  SING N N 20 
O3Z C   OXT DOUB N N 21 
O3Z C   O   SING N N 22 
O3Z C6  H1  SING N N 23 
O3Z O   H2  SING N N 24 
O3Z CA  H3  SING N N 25 
O3Z CB  H4  SING N N 26 
O3Z CB  H5  SING N N 27 
O3Z OG  H6  SING N N 28 
O3Z N   H7  SING N N 29 
O3Z C4A H9  SING N N 30 
O3Z C4A H10 SING N N 31 
O3Z O3  H11 SING N N 32 
O3Z C2A H12 SING N N 33 
O3Z C2A H13 SING N N 34 
O3Z C2A H14 SING N N 35 
O3Z C5A H15 SING N N 36 
O3Z C5A H16 SING N N 37 
O3Z O1P H17 SING N N 38 
O3Z O2P H18 SING N N 39 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
O3Z InChI            InChI                1.03  "InChI=1S/C11H17N2O8P/c1-6-10(15)8(3-13-9(4-14)11(16)17)7(2-12-6)5-21-22(18,19)20/h2,9,13-15H,3-5H2,1H3,(H,16,17)(H2,18,19,20)/t9-/m1/s1" 
O3Z InChIKey         InChI                1.03  ODVKKQWXKRZJLG-SECBINFHSA-N                                                                                                               
O3Z SMILES_CANONICAL CACTVS               3.385 "Cc1ncc(CO[P](O)(O)=O)c(CN[C@H](CO)C(O)=O)c1O"                                                                                            
O3Z SMILES           CACTVS               3.385 "Cc1ncc(CO[P](O)(O)=O)c(CN[CH](CO)C(O)=O)c1O"                                                                                             
O3Z SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c(c(c(cn1)COP(=O)(O)O)CN[C@H](CO)C(=O)O)O"                                                                                            
O3Z SMILES           "OpenEye OEToolkits" 2.0.7 "Cc1c(c(c(cn1)COP(=O)(O)O)CNC(CO)C(=O)O)O"                                                                                                
# 
_pdbx_chem_comp_identifier.comp_id           O3Z 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{R})-2-[[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylamino]-3-oxidanyl-propanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
O3Z "Create component" 2020-01-28 PDBE 
O3Z "Initial release"  2020-04-15 RCSB 
O3Z "Modify backbone"  2024-09-26 PDBE 
O3Z "Modify PCM"       2024-09-27 PDBE 
# 
loop_
_pdbx_chem_comp_pcm.pcm_id 
_pdbx_chem_comp_pcm.comp_id 
_pdbx_chem_comp_pcm.modified_residue_id 
_pdbx_chem_comp_pcm.type 
_pdbx_chem_comp_pcm.category 
_pdbx_chem_comp_pcm.position 
_pdbx_chem_comp_pcm.polypeptide_position 
_pdbx_chem_comp_pcm.comp_id_linking_atom 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession 
1 O3Z DSN "Pyridoxal phosphate" "Named protein modification"     "Amino-acid backbone"   N-terminal     ?   ?  ? ? 
2 O3Z LYS None                  "Covalent chemical modification" "Amino-acid side chain" "Any position" C4A NZ ? ? 
# 
