data_LRZ
#

_chem_comp.id                                   LRZ
_chem_comp.name                                 "methyl 6-[3-[[~{N}-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl]carbamimidoyl]amino]propylcarbamoylamino]-4-oxidanyl-naphthalene-2-carboxylate"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C27 H32 N10 O7"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-09-03
_chem_comp.pdbx_modified_date                   2022-03-18
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       608.606
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    LRZ
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6SQ6
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
LRZ  C1   C1   C  0  1  Y  N  N   3.523  29.504  -17.825  -11.609   0.529   0.134  C1   LRZ   1  
LRZ  C2   C2   C  0  1  Y  N  N   2.764  28.490  -18.414  -11.140   1.781  -0.305  C2   LRZ   2  
LRZ  C3   C3   C  0  1  Y  N  N   3.351  27.301  -18.778   -9.823   1.967  -0.596  C3   LRZ   3  
LRZ  C4   C4   C  0  1  Y  N  N   4.728  27.047  -18.506   -8.912   0.897  -0.458  C4   LRZ   4  
LRZ  C5   C5   C  0  1  Y  N  N   5.481  28.061  -17.853   -9.378  -0.368  -0.015  C5   LRZ   5  
LRZ  C6   C6   C  0  1  Y  N  N   4.849  29.290  -17.535  -10.737  -0.537   0.284  C6   LRZ   6  
LRZ  O1   O1   O  0  1  N  N  N   2.683  26.318  -19.436   -9.386   3.182  -1.019  O1   LRZ   7  
LRZ  O2   O2   O  0  1  N  N  N   3.724  31.737  -17.069  -13.894   1.386   0.300  O2   LRZ   8  
LRZ  O3   O3   O  0  1  N  N  N   1.679  31.023  -17.683  -13.452  -0.725   0.828  O3   LRZ   9  
LRZ  O5   O4   O  0  1  N  N  N  12.293  29.139  -16.826    7.995  -3.871  -0.641  O5   LRZ  10  
LRZ  C10  C7   C  0  1  Y  N  N   6.831  27.794  -17.521   -8.469  -1.433   0.121  C10  LRZ  11  
LRZ  C11  C8   C  0  1  N  N  N   2.864  30.822  -17.548  -13.042   0.353   0.444  C11  LRZ  12  
LRZ  C12  C9   C  0  1  N  N  N   3.276  33.130  -17.047  -15.288   1.140   0.623  C12  LRZ  13  
LRZ  C13  C10  C  0  1  N  N  N   8.598  24.206  -19.289   -4.402  -0.508  -0.196  C13  LRZ  14  
LRZ  C14  C11  C  0  1  N  N  N  10.136  22.692  -20.453   -2.093  -1.166   0.220  C14  LRZ  15  
LRZ  C15  C12  C  0  1  N  N  N  10.878  21.535  -19.802   -0.710  -0.910  -0.383  C15  LRZ  16  
LRZ  C16  C13  C  0  1  N  N  N  12.035  22.011  -18.953    0.345  -1.676   0.417  C16  LRZ  17  
LRZ  C17  C14  C  0  1  N  N  N  12.783  24.338  -19.183    2.781  -2.019   0.395  C17  LRZ  18  
LRZ  C18  C15  C  0  1  N  N  N  13.304  26.737  -19.209    5.208  -2.415   0.446  C18  LRZ  19  
LRZ  C19  C16  C  0  1  N  N  R  12.606  28.065  -18.977    6.452  -1.998  -0.341  C19  LRZ  20  
LRZ  C20  C17  C  0  1  N  N  S  11.768  28.141  -17.694    7.698  -2.745   0.187  C20  LRZ  21  
LRZ  C21  C18  C  0  1  N  N  R  10.352  28.473  -18.190    8.829  -1.696   0.101  C21  LRZ  22  
LRZ  C22  C19  C  0  1  N  N  R  10.630  29.108  -19.545    8.133  -0.440  -0.469  C22  LRZ  23  
LRZ  C23  C20  C  0  1  Y  N  N   8.653  27.986  -20.675    8.163   1.429   1.226  C23  LRZ  24  
LRZ  C24  C21  C  0  1  Y  N  N   8.146  29.409  -22.162    9.928   2.539   0.630  C24  LRZ  25  
LRZ  C25  C22  C  0  1  Y  N  N   7.648  30.169  -23.238   11.010   3.418   0.448  C25  LRZ  26  
LRZ  C26  C23  C  0  1  Y  N  N   9.183  31.799  -22.657   11.698   2.142  -1.349  C26  LRZ  27  
LRZ  C27  C24  C  0  1  Y  N  N   9.188  29.967  -21.438    9.803   1.449  -0.248  C27  LRZ  28  
LRZ  C7   C25  C  0  1  Y  N  N   5.374  25.823  -18.825   -7.552   1.065  -0.752  C7   LRZ  29  
LRZ  C8   C26  C  0  1  Y  N  N   6.692  25.603  -18.495   -6.688   0.001  -0.607  C8   LRZ  30  
LRZ  C9   C27  C  0  1  Y  N  N   7.406  26.595  -17.828   -7.155  -1.244  -0.171  C9   LRZ  31  
LRZ  N1   N1   N  0  1  N  N  N   7.303  24.381  -18.870   -5.331   0.167  -0.901  N1   LRZ  32  
LRZ  N10  N2   N  0  1  Y  N  N   9.750  31.167  -21.627   10.703   1.291  -1.213  N10  LRZ  33  
LRZ  N2   N3   N  0  1  N  N  N   8.856  22.992  -19.823   -3.103  -0.432  -0.547  N2   LRZ  34  
LRZ  N3   N4   N  0  1  N  N  N  11.966  23.430  -18.632    1.669  -1.431  -0.160  N3   LRZ  35  
LRZ  N4   N5   N  0  1  N  N  N  12.385  25.614  -19.284    4.023  -1.789  -0.146  N4   LRZ  36  
LRZ  N5   N6   N  0  1  N  N  N  13.942  24.088  -19.665    2.657  -2.794   1.436  N5   LRZ  37  
LRZ  N6   N7   N  0  1  Y  N  N   9.528  29.028  -20.491    8.679   0.771   0.150  N6   LRZ  38  
LRZ  N7   N8   N  0  1  Y  N  N   7.806  28.165  -21.658    8.898   2.466   1.507  N7   LRZ  39  
LRZ  N8   N9   N  0  1  N  N  N   6.685  29.746  -24.065   11.188   4.505   1.285  N8   LRZ  40  
LRZ  N9   N10  N  0  1  Y  N  N   8.196  31.383  -23.454   11.858   3.180  -0.547  N9   LRZ  41  
LRZ  O4   O5   O  0  1  N  N  N   9.456  25.082  -19.212   -4.735  -1.186   0.757  O4   LRZ  42  
LRZ  O6   O6   O  0  1  N  N  N   9.709  29.413  -17.342    9.859  -2.142  -0.783  O6   LRZ  43  
LRZ  O7   O7   O  0  1  N  N  N  11.717  28.379  -20.069    6.740  -0.600  -0.123  O7   LRZ  44  
LRZ  H1   H1   H  0  1  N  N  N   1.708  28.641  -18.585  -11.832   2.603  -0.412  H1   LRZ  45  
LRZ  H2   H2   H  0  1  N  N  N   5.420  30.072  -17.056  -11.103  -1.494   0.626  H2   LRZ  46  
LRZ  H6   H3   H  0  1  N  N  N   1.780  26.582  -19.568   -9.411   3.296  -1.979  H6   LRZ  47  
LRZ  H25  H4   H  0  1  N  N  N  11.768  29.179  -16.035    8.768  -4.376  -0.355  H25  LRZ  48  
LRZ  H5   H5   H  0  1  N  N  N   7.415  28.550  -17.017   -8.814  -2.399   0.457  H5   LRZ  49  
LRZ  H8   H6   H  0  1  N  N  N   4.073  33.766  -16.634  -15.372   0.834   1.666  H8   LRZ  50  
LRZ  H10  H7   H  0  1  N  N  N   3.041  33.456  -18.071  -15.865   2.051   0.465  H10  LRZ  51  
LRZ  H9   H8   H  0  1  N  N  N   2.377  33.216  -16.420  -15.676   0.349  -0.019  H9   LRZ  52  
LRZ  H12  H9   H  0  1  N  N  N   9.954  22.439  -21.508   -2.313  -2.233   0.183  H12  LRZ  53  
LRZ  H13  H10  H  0  1  N  N  N  10.771  23.589  -20.396   -2.106  -0.827   1.255  H13  LRZ  54  
LRZ  H14  H11  H  0  1  N  N  N  10.176  20.976  -19.165   -0.697  -1.248  -1.419  H14  LRZ  55  
LRZ  H15  H12  H  0  1  N  N  N  11.265  20.873  -20.590   -0.489   0.157  -0.347  H15  LRZ  56  
LRZ  H16  H13  H  0  1  N  N  N  12.037  21.440  -18.013    0.332  -1.337   1.453  H16  LRZ  57  
LRZ  H17  H14  H  0  1  N  N  N  12.971  21.821  -19.499    0.125  -2.743   0.381  H17  LRZ  58  
LRZ  H21  H15  H  0  1  N  N  N  14.005  26.561  -18.380    5.102  -3.499   0.410  H21  LRZ  59  
LRZ  H22  H16  H  0  1  N  N  N  13.862  26.796  -20.155    5.309  -2.094   1.482  H22  LRZ  60  
LRZ  H23  H17  H  0  1  N  N  N  13.379  28.845  -18.915    6.313  -2.198  -1.404  H23  LRZ  61  
LRZ  H24  H18  H  0  1  N  N  N  11.761  27.156  -17.203    7.544  -3.060   1.219  H24  LRZ  62  
LRZ  H26  H19  H  0  1  N  N  N   9.763  27.552  -18.309    9.237  -1.493   1.090  H26  LRZ  63  
LRZ  H28  H20  H  0  1  N  N  N  10.913  30.160  -19.392    8.252  -0.398  -1.552  H28  LRZ  64  
LRZ  H29  H21  H  0  1  N  N  N   8.662  27.096  -20.063    7.274   1.135   1.764  H29  LRZ  65  
LRZ  H32  H22  H  0  1  N  N  N   9.576  32.781  -22.875   12.411   1.985  -2.144  H32  LRZ  66  
LRZ  H3   H23  H  0  1  N  N  N   4.820  25.050  -19.337   -7.184   2.023  -1.090  H3   LRZ  67  
LRZ  H4   H24  H  0  1  N  N  N   8.433  26.412  -17.549   -6.462  -2.066  -0.064  H4   LRZ  68  
LRZ  H7   H25  H  0  1  N  N  N   6.732  23.562  -18.825   -5.059   0.768  -1.612  H7   LRZ  69  
LRZ  H11  H26  H  0  1  N  N  N   8.152  22.282  -19.785   -2.837   0.109  -1.307  H11  LRZ  70  
LRZ  H18  H27  H  0  1  N  N  N  11.280  23.739  -17.973    1.762  -0.854  -0.934  H18  LRZ  71  
LRZ  H19  H28  H  0  1  N  N  N  11.412  25.802  -19.417    4.116  -1.212  -0.921  H19  LRZ  72  
LRZ  H20  H29  H  0  1  N  N  N  14.180  23.120  -19.585    1.780  -2.956   1.818  H20  LRZ  73  
LRZ  H31  H30  H  0  1  N  N  N   6.512  30.444  -24.760   10.562   4.668   2.007  H31  LRZ  74  
LRZ  H30  H31  H  0  1  N  N  N   6.976  28.898  -24.509   11.938   5.105   1.148  H30  LRZ  75  
LRZ  H27  H32  H  0  1  N  N  N   9.537  29.013  -16.498   10.289  -2.962  -0.504  H27  LRZ  76  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
LRZ  N8   C25  SING  N  N   1  
LRZ  N9   C25  DOUB  Y  N   2  
LRZ  N9   C26  SING  Y  N   3  
LRZ  C25  C24  SING  Y  N   4  
LRZ  C26  N10  DOUB  Y  N   5  
LRZ  C24  N7   SING  Y  N   6  
LRZ  C24  C27  DOUB  Y  N   7  
LRZ  N7   C23  DOUB  Y  N   8  
LRZ  N10  C27  SING  Y  N   9  
LRZ  C27  N6   SING  Y  N  10  
LRZ  C23  N6   SING  Y  N  11  
LRZ  N6   C22  SING  N  N  12  
LRZ  C14  N2   SING  N  N  13  
LRZ  C14  C15  SING  N  N  14  
LRZ  O7   C22  SING  N  N  15  
LRZ  O7   C19  SING  N  N  16  
LRZ  N2   C13  SING  N  N  17  
LRZ  C15  C16  SING  N  N  18  
LRZ  N5   C17  DOUB  N  N  19  
LRZ  C22  C21  SING  N  N  20  
LRZ  O1   C3   SING  N  N  21  
LRZ  C13  O4   DOUB  N  N  22  
LRZ  C13  N1   SING  N  N  23  
LRZ  N4   C18  SING  N  N  24  
LRZ  N4   C17  SING  N  N  25  
LRZ  C18  C19  SING  N  N  26  
LRZ  C17  N3   SING  N  N  27  
LRZ  C19  C20  SING  N  N  28  
LRZ  C16  N3   SING  N  N  29  
LRZ  N1   C8   SING  N  N  30  
LRZ  C7   C4   DOUB  Y  N  31  
LRZ  C7   C8   SING  Y  N  32  
LRZ  C3   C4   SING  Y  N  33  
LRZ  C3   C2   DOUB  Y  N  34  
LRZ  C4   C5   SING  Y  N  35  
LRZ  C8   C9   DOUB  Y  N  36  
LRZ  C2   C1   SING  Y  N  37  
LRZ  C21  C20  SING  N  N  38  
LRZ  C21  O6   SING  N  N  39  
LRZ  C5   C6   SING  Y  N  40  
LRZ  C5   C10  DOUB  Y  N  41  
LRZ  C9   C10  SING  Y  N  42  
LRZ  C1   C11  SING  N  N  43  
LRZ  C1   C6   DOUB  Y  N  44  
LRZ  C20  O5   SING  N  N  45  
LRZ  O3   C11  DOUB  N  N  46  
LRZ  C11  O2   SING  N  N  47  
LRZ  O2   C12  SING  N  N  48  
LRZ  C2   H1   SING  N  N  49  
LRZ  C6   H2   SING  N  N  50  
LRZ  O1   H6   SING  N  N  51  
LRZ  O5   H25  SING  N  N  52  
LRZ  C10  H5   SING  N  N  53  
LRZ  C12  H8   SING  N  N  54  
LRZ  C12  H10  SING  N  N  55  
LRZ  C12  H9   SING  N  N  56  
LRZ  C14  H12  SING  N  N  57  
LRZ  C14  H13  SING  N  N  58  
LRZ  C15  H14  SING  N  N  59  
LRZ  C15  H15  SING  N  N  60  
LRZ  C16  H16  SING  N  N  61  
LRZ  C16  H17  SING  N  N  62  
LRZ  C18  H21  SING  N  N  63  
LRZ  C18  H22  SING  N  N  64  
LRZ  C19  H23  SING  N  N  65  
LRZ  C20  H24  SING  N  N  66  
LRZ  C21  H26  SING  N  N  67  
LRZ  C22  H28  SING  N  N  68  
LRZ  C23  H29  SING  N  N  69  
LRZ  C26  H32  SING  N  N  70  
LRZ  C7   H3   SING  N  N  71  
LRZ  C9   H4   SING  N  N  72  
LRZ  N1   H7   SING  N  N  73  
LRZ  N2   H11  SING  N  N  74  
LRZ  N3   H18  SING  N  N  75  
LRZ  N4   H19  SING  N  N  76  
LRZ  N5   H20  SING  N  N  77  
LRZ  N8   H31  SING  N  N  78  
LRZ  N8   H30  SING  N  N  79  
LRZ  O6   H27  SING  N  N  80  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
LRZ  InChI             InChI                 1.03   "InChI=1S/C27H32N10O7/c1-43-25(41)14-7-13-3-4-15(9-16(13)17(38)8-14)36-27(42)31-6-2-5-30-26(29)32-10-18-20(39)21(40)24(44-18)37-12-35-19-22(28)33-11-34-23(19)37/h3-4,7-9,11-12,18,20-21,24,38-40H,2,5-6,10H2,1H3,(H2,28,33,34)(H3,29,30,32)(H2,31,36,42)/t18-,20-,21-,24-/m1/s1"  
LRZ  InChIKey          InChI                 1.03   GJPQENHVEQGHGP-UMCMBGNQSA-N  
LRZ  SMILES_CANONICAL  CACTVS                3.385  "COC(=O)c1cc(O)c2cc(NC(=O)NCCCNC(=N)NC[C@H]3O[C@H]([C@H](O)[C@@H]3O)n4cnc5c(N)ncnc45)ccc2c1"  
LRZ  SMILES            CACTVS                3.385  "COC(=O)c1cc(O)c2cc(NC(=O)NCCCNC(=N)NC[CH]3O[CH]([CH](O)[CH]3O)n4cnc5c(N)ncnc45)ccc2c1"  
LRZ  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "[H]/N=C(\NCCCNC(=O)Nc1ccc2cc(cc(c2c1)O)C(=O)OC)/NC[C@@H]3[C@H]([C@H]([C@@H](O3)n4cnc5c4ncnc5N)O)O"  
LRZ  SMILES            "OpenEye OEToolkits"  2.0.7  "COC(=O)c1cc2ccc(cc2c(c1)O)NC(=O)NCCCNC(=N)NCC3C(C(C(O3)n4cnc5c4ncnc5N)O)O"  
#
_pdbx_chem_comp_identifier.comp_id          LRZ
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "methyl 6-[3-[[~{N}-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl]carbamimidoyl]amino]propylcarbamoylamino]-4-oxidanyl-naphthalene-2-carboxylate"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
LRZ  "Create component"  2019-09-03  EBI   
LRZ  "Initial release"   2022-03-23  RCSB  
##
