data_L1Z
#

_chem_comp.id                                   L1Z
_chem_comp.name                                 "~{N}-[3-[1-[[4-(5-methyl-6-oxidanylidene-3-phenyl-1~{H}-pyrazin-2-yl)phenyl]methyl]piperidin-4-yl]-2-oxidanylidene-1~{H}-benzimidazol-5-yl]propanamide"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C33 H34 N6 O3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-07-15
_chem_comp.pdbx_modified_date                   2019-10-11
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       562.661
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    L1Z
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6S9W
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
L1Z  CAA  C1   C  0  1  N  N  N  -17.718  -16.364   7.936   6.380  -2.732  -1.526  CAA  L1Z   1  
L1Z  CAB  C2   C  0  1  N  N  N  -18.128  -15.416   7.010   7.617  -2.181  -1.124  CAB  L1Z   2  
L1Z  CAD  C3   C  0  1  N  N  N  -16.843  -13.737   8.054   6.551  -0.298  -0.341  CAD  L1Z   3  
L1Z  CAE  C4   C  0  1  N  N  N  -16.393  -14.655   9.023   5.312  -0.807  -0.722  CAE  L1Z   4  
L1Z  CAG  C5   C  0  1  Y  N  N  -16.480  -12.386   8.002   6.634   1.032   0.306  CAG  L1Z   5  
L1Z  CAH  C6   C  0  1  Y  N  N  -15.514  -14.346  10.069   4.084  -0.026  -0.485  CAH  L1Z   6  
L1Z  CAI  C7   C  0  1  Y  N  N  -16.688  -11.525   9.076   7.355   1.191   1.489  CAI  L1Z   7  
L1Z  CAJ  C8   C  0  1  Y  N  N  -16.322  -10.185   8.979   7.429   2.433   2.087  CAJ  L1Z   8  
L1Z  CAK  C9   C  0  1  Y  N  N  -15.760   -9.688   7.808   6.788   3.518   1.516  CAK  L1Z   9  
L1Z  CAL  C10  C  0  1  Y  N  N  -15.564  -10.543   6.732   6.071   3.366   0.343  CAL  L1Z  10  
L1Z  CAM  C11  C  0  1  Y  N  N  -15.929  -11.882   6.829   5.994   2.130  -0.267  CAM  L1Z  11  
L1Z  CAN  C12  C  0  1  Y  N  N  -15.839  -14.719  11.370   3.168   0.174  -1.521  CAN  L1Z  12  
L1Z  CAO  C13  C  0  1  Y  N  N  -14.973  -14.428  12.422   2.022   0.905  -1.292  CAO  L1Z  13  
L1Z  CAP  C14  C  0  1  Y  N  N  -13.766  -13.775  12.184   1.777   1.441  -0.039  CAP  L1Z  14  
L1Z  CAQ  C15  C  0  1  Y  N  N  -13.436  -13.412  10.885   2.680   1.247   0.992  CAQ  L1Z  15  
L1Z  CAR  C16  C  0  1  Y  N  N  -14.300  -13.705   9.836   3.828   0.513   0.779  CAR  L1Z  16  
L1Z  CAS  C17  C  0  1  N  N  N  -12.891  -13.476  13.229   0.522   2.239   0.203  CAS  L1Z  17  
L1Z  CAU  C18  C  0  1  N  N  N  -11.846  -15.617  13.580  -1.715   2.103   1.118  CAU  L1Z  18  
L1Z  CAV  C19  C  0  1  N  N  N  -11.662  -16.789  14.526  -2.752   1.143   1.706  CAV  L1Z  19  
L1Z  CAW  C20  C  0  1  N  N  N  -11.091  -16.287  15.843  -3.178   0.140   0.631  CAW  L1Z  20  
L1Z  CAX  C21  C  0  1  N  N  N  -12.002  -15.219  16.421  -1.942  -0.607   0.122  CAX  L1Z  21  
L1Z  CAY  C22  C  0  1  N  N  N  -12.151  -14.099  15.415  -0.928   0.404  -0.419  CAY  L1Z  22  
L1Z  CBA  C23  C  0  1  N  N  N  -11.666  -18.362  17.257  -3.885  -1.645   2.237  CBA  L1Z  23  
L1Z  CBC  C24  C  0  1  Y  N  N   -9.786  -18.603  18.262  -5.977  -2.021   1.589  CBC  L1Z  24  
L1Z  CBD  C25  C  0  1  Y  N  N   -9.703  -17.544  17.451  -5.435  -1.027   0.770  CBD  L1Z  25  
L1Z  CBE  C26  C  0  1  Y  N  N   -8.735  -18.964  19.005  -7.282  -2.444   1.393  CBE  L1Z  26  
L1Z  CBF  C27  C  0  1  Y  N  N   -7.530  -18.257  18.951  -8.045  -1.883   0.388  CBF  L1Z  27  
L1Z  CBG  C28  C  0  1  Y  N  N   -7.454  -17.137  18.125  -7.509  -0.894  -0.428  CBG  L1Z  28  
L1Z  CBH  C29  C  0  1  Y  N  N   -8.580  -16.837  17.369  -6.203  -0.466  -0.237  CBH  L1Z  29  
L1Z  CBJ  C30  C  0  1  N  N  N   -5.548  -15.778  18.845  -8.124   0.967  -1.779  CBJ  L1Z  30  
L1Z  CBK  C31  C  0  1  N  N  N   -5.744  -16.028  20.348  -8.881   1.546  -2.946  CBK  L1Z  31  
L1Z  CBL  C32  C  0  1  N  N  N   -4.366  -16.179  21.002  -8.517   3.023  -3.109  CBL  L1Z  32  
L1Z  CBO  C33  C  0  1  N  N  N  -19.001  -15.784   5.991   8.891  -2.954  -1.352  CBO  L1Z  33  
L1Z  NAC  N1   N  0  1  N  N  N  -17.686  -14.151   7.091   7.665  -1.003  -0.554  NAC  L1Z  34  
L1Z  NAF  N2   N  0  1  N  N  N  -16.842  -15.982   8.955   5.242  -2.036  -1.319  NAF  L1Z  35  
L1Z  NAT  N3   N  0  1  N  N  N  -12.738  -14.601  14.163  -0.552   1.340   0.647  NAT  L1Z  36  
L1Z  NAZ  N4   N  0  1  N  N  N  -10.867  -17.391  16.820  -4.127  -0.818   1.203  NAZ  L1Z  37  
L1Z  NBB  N5   N  0  1  N  N  N  -11.014  -19.116  18.141  -4.980  -2.384   2.495  NBB  L1Z  38  
L1Z  NBI  N6   N  0  1  N  N  N   -6.372  -16.350  17.917  -8.288  -0.329  -1.446  NBI  L1Z  39  
L1Z  OBM  O1   O  0  1  N  N  N   -4.616  -15.055  18.493  -7.367   1.667  -1.140  OBM  L1Z  40  
L1Z  OBN  O2   O  0  1  N  N  N  -12.832  -18.547  16.901  -2.832  -1.717   2.844  OBN  L1Z  41  
L1Z  OBP  O3   O  0  1  N  N  N  -18.115  -17.530   7.871   6.341  -3.827  -2.061  OBP  L1Z  42  
L1Z  H1   H1   H  0  1  N  N  N  -17.134  -11.897   9.986   7.855   0.345   1.936  H1   L1Z  43  
L1Z  H2   H2   H  0  1  N  N  N  -16.476   -9.526   9.821   7.987   2.557   3.003  H2   L1Z  44  
L1Z  H3   H3   H  0  1  N  N  N  -15.479   -8.648   7.736   6.848   4.487   1.988  H3   L1Z  45  
L1Z  H4   H4   H  0  1  N  N  N  -15.127  -10.168   5.818   5.576   4.217  -0.101  H4   L1Z  46  
L1Z  H5   H5   H  0  1  N  N  N  -15.783  -12.538   5.983   5.434   2.013  -1.183  H5   L1Z  47  
L1Z  H6   H6   H  0  1  N  N  N  -16.767  -15.236  11.565   3.358  -0.242  -2.499  H6   L1Z  48  
L1Z  H7   H7   H  0  1  N  N  N  -15.240  -14.711  13.430   1.313   1.061  -2.092  H7   L1Z  49  
L1Z  H8   H8   H  0  1  N  N  N  -12.505  -12.900  10.689   2.483   1.667   1.967  H8   L1Z  50  
L1Z  H9   H9   H  0  1  N  N  N  -14.026  -13.432   8.828   4.529   0.359   1.585  H9   L1Z  51  
L1Z  H10  H10  H  0  1  N  N  N  -11.906  -13.229  12.807   0.711   2.987   0.973  H10  L1Z  52  
L1Z  H11  H11  H  0  1  N  N  N  -13.281  -12.608  13.781   0.223   2.735  -0.720  H11  L1Z  53  
L1Z  H12  H12  H  0  1  N  N  N  -12.283  -15.981  12.638  -2.155   2.647   0.283  H12  L1Z  54  
L1Z  H13  H13  H  0  1  N  N  N  -10.866  -15.161  13.378  -1.399   2.810   1.886  H13  L1Z  55  
L1Z  H14  H14  H  0  1  N  N  N  -12.634  -17.271  14.707  -2.316   0.609   2.550  H14  L1Z  56  
L1Z  H15  H15  H  0  1  N  N  N  -10.969  -17.517  14.079  -3.622   1.708   2.041  H15  L1Z  57  
L1Z  H16  H16  H  0  1  N  N  N  -10.119  -15.818  15.629  -3.649   0.670  -0.197  H16  L1Z  58  
L1Z  H17  H17  H  0  1  N  N  N  -11.564  -14.824  17.350  -1.493  -1.169   0.941  H17  L1Z  59  
L1Z  H18  H18  H  0  1  N  N  N  -12.989  -15.654  16.637  -2.233  -1.293  -0.674  H18  L1Z  60  
L1Z  H19  H19  H  0  1  N  N  N  -11.161  -13.670  15.203  -0.041  -0.124  -0.769  H19  L1Z  61  
L1Z  H20  H20  H  0  1  N  N  N  -12.806  -13.321  15.835  -1.373   0.956  -1.248  H20  L1Z  62  
L1Z  H21  H21  H  0  1  N  N  N   -8.818  -19.819  19.660  -7.702  -3.213   2.025  H21  L1Z  63  
L1Z  H22  H22  H  0  1  N  N  N   -6.678  -18.571  19.536  -9.062  -2.214   0.235  H22  L1Z  64  
L1Z  H23  H23  H  0  1  N  N  N   -8.542  -15.998  16.689  -5.787   0.302  -0.872  H23  L1Z  65  
L1Z  H24  H24  H  0  1  N  N  N   -6.277  -15.178  20.799  -8.618   1.005  -3.855  H24  L1Z  66  
L1Z  H25  H25  H  0  1  N  N  N   -6.328  -16.948  20.498  -9.952   1.454  -2.766  H25  L1Z  67  
L1Z  H26  H26  H  0  1  N  N  N   -4.489  -16.359  22.080  -7.445   3.115  -3.289  H26  L1Z  68  
L1Z  H27  H27  H  0  1  N  N  N   -3.835  -17.028  20.547  -9.064   3.442  -3.953  H27  L1Z  69  
L1Z  H28  H28  H  0  1  N  N  N   -3.784  -15.258  20.848  -8.780   3.564  -2.200  H28  L1Z  70  
L1Z  H29  H29  H  0  1  N  N  N  -19.213  -14.911   5.356   9.738  -2.377  -0.982  H29  L1Z  71  
L1Z  H30  H30  H  0  1  N  N  N  -18.541  -16.577   5.383   8.839  -3.905  -0.822  H30  L1Z  72  
L1Z  H31  H31  H  0  1  N  N  N  -19.939  -16.155   6.429   9.016  -3.140  -2.419  H31  L1Z  73  
L1Z  H32  H32  H  0  1  N  N  N  -16.537  -16.651   9.632   4.386  -2.402  -1.591  H32  L1Z  74  
L1Z  H34  H34  H  0  1  N  N  N  -11.375  -19.914  18.623  -5.062  -3.054   3.191  H34  L1Z  75  
L1Z  H35  H35  H  0  1  N  N  N   -6.147  -16.163  16.961  -8.945  -0.870  -1.910  H35  L1Z  76  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
L1Z  CBO  CAB  SING  N  N   1  
L1Z  CAL  CAM  DOUB  Y  N   2  
L1Z  CAL  CAK  SING  Y  N   3  
L1Z  CAM  CAG  SING  Y  N   4  
L1Z  CAB  NAC  DOUB  N  N   5  
L1Z  CAB  CAA  SING  N  N   6  
L1Z  NAC  CAD  SING  N  N   7  
L1Z  CAK  CAJ  DOUB  Y  N   8  
L1Z  OBP  CAA  DOUB  N  N   9  
L1Z  CAA  NAF  SING  N  N  10  
L1Z  CAG  CAD  SING  N  N  11  
L1Z  CAG  CAI  DOUB  Y  N  12  
L1Z  CAD  CAE  DOUB  N  N  13  
L1Z  NAF  CAE  SING  N  N  14  
L1Z  CAJ  CAI  SING  Y  N  15  
L1Z  CAE  CAH  SING  N  N  16  
L1Z  CAR  CAH  DOUB  Y  N  17  
L1Z  CAR  CAQ  SING  Y  N  18  
L1Z  CAH  CAN  SING  Y  N  19  
L1Z  CAQ  CAP  DOUB  Y  N  20  
L1Z  CAN  CAO  DOUB  Y  N  21  
L1Z  CAP  CAO  SING  Y  N  22  
L1Z  CAP  CAS  SING  N  N  23  
L1Z  CAS  NAT  SING  N  N  24  
L1Z  CAU  NAT  SING  N  N  25  
L1Z  CAU  CAV  SING  N  N  26  
L1Z  NAT  CAY  SING  N  N  27  
L1Z  CAV  CAW  SING  N  N  28  
L1Z  CAY  CAX  SING  N  N  29  
L1Z  CAW  CAX  SING  N  N  30  
L1Z  CAW  NAZ  SING  N  N  31  
L1Z  NAZ  CBA  SING  N  N  32  
L1Z  NAZ  CBD  SING  N  N  33  
L1Z  OBN  CBA  DOUB  N  N  34  
L1Z  CBA  NBB  SING  N  N  35  
L1Z  CBH  CBD  DOUB  Y  N  36  
L1Z  CBH  CBG  SING  Y  N  37  
L1Z  CBD  CBC  SING  Y  N  38  
L1Z  NBI  CBG  SING  N  N  39  
L1Z  NBI  CBJ  SING  N  N  40  
L1Z  CBG  CBF  DOUB  Y  N  41  
L1Z  NBB  CBC  SING  N  N  42  
L1Z  CBC  CBE  DOUB  Y  N  43  
L1Z  OBM  CBJ  DOUB  N  N  44  
L1Z  CBJ  CBK  SING  N  N  45  
L1Z  CBF  CBE  SING  Y  N  46  
L1Z  CBK  CBL  SING  N  N  47  
L1Z  CAI  H1   SING  N  N  48  
L1Z  CAJ  H2   SING  N  N  49  
L1Z  CAK  H3   SING  N  N  50  
L1Z  CAL  H4   SING  N  N  51  
L1Z  CAM  H5   SING  N  N  52  
L1Z  CAN  H6   SING  N  N  53  
L1Z  CAO  H7   SING  N  N  54  
L1Z  CAQ  H8   SING  N  N  55  
L1Z  CAR  H9   SING  N  N  56  
L1Z  CAS  H10  SING  N  N  57  
L1Z  CAS  H11  SING  N  N  58  
L1Z  CAU  H12  SING  N  N  59  
L1Z  CAU  H13  SING  N  N  60  
L1Z  CAV  H14  SING  N  N  61  
L1Z  CAV  H15  SING  N  N  62  
L1Z  CAW  H16  SING  N  N  63  
L1Z  CAX  H17  SING  N  N  64  
L1Z  CAX  H18  SING  N  N  65  
L1Z  CAY  H19  SING  N  N  66  
L1Z  CAY  H20  SING  N  N  67  
L1Z  CBE  H21  SING  N  N  68  
L1Z  CBF  H22  SING  N  N  69  
L1Z  CBH  H23  SING  N  N  70  
L1Z  CBK  H24  SING  N  N  71  
L1Z  CBK  H25  SING  N  N  72  
L1Z  CBL  H26  SING  N  N  73  
L1Z  CBL  H27  SING  N  N  74  
L1Z  CBL  H28  SING  N  N  75  
L1Z  CBO  H29  SING  N  N  76  
L1Z  CBO  H30  SING  N  N  77  
L1Z  CBO  H31  SING  N  N  78  
L1Z  NAF  H32  SING  N  N  79  
L1Z  NBB  H34  SING  N  N  80  
L1Z  NBI  H35  SING  N  N  81  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
L1Z  InChI             InChI                 1.03   "InChI=1S/C33H34N6O3/c1-3-29(40)35-25-13-14-27-28(19-25)39(33(42)36-27)26-15-17-38(18-16-26)20-22-9-11-24(12-10-22)31-30(23-7-5-4-6-8-23)34-21(2)32(41)37-31/h4-14,19,26H,3,15-18,20H2,1-2H3,(H,35,40)(H,36,42)(H,37,41)"  
L1Z  InChIKey          InChI                 1.03   HCHZPUXPCDNSSQ-UHFFFAOYSA-N  
L1Z  SMILES_CANONICAL  CACTVS                3.385  "CCC(=O)Nc1ccc2NC(=O)N(C3CCN(CC3)Cc4ccc(cc4)C5=C(N=C(C)C(=O)N5)c6ccccc6)c2c1"  
L1Z  SMILES            CACTVS                3.385  "CCC(=O)Nc1ccc2NC(=O)N(C3CCN(CC3)Cc4ccc(cc4)C5=C(N=C(C)C(=O)N5)c6ccccc6)c2c1"  
L1Z  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CCC(=O)Nc1ccc2c(c1)N(C(=O)N2)C3CCN(CC3)Cc4ccc(cc4)C5=C(N=C(C(=O)N5)C)c6ccccc6"  
L1Z  SMILES            "OpenEye OEToolkits"  2.0.7  "CCC(=O)Nc1ccc2c(c1)N(C(=O)N2)C3CCN(CC3)Cc4ccc(cc4)C5=C(N=C(C(=O)N5)C)c6ccccc6"  
#
_pdbx_chem_comp_identifier.comp_id          L1Z
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "~{N}-[3-[1-[[4-(5-methyl-6-oxidanylidene-3-phenyl-1~{H}-pyrazin-2-yl)phenyl]methyl]piperidin-4-yl]-2-oxidanylidene-1~{H}-benzimidazol-5-yl]propanamide"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
L1Z  "Create component"  2019-07-15  PDBE  
L1Z  "Initial release"   2019-10-16  RCSB  
##
