data_KWZ
# 
_chem_comp.id                                    KWZ 
_chem_comp.name                                  "4-(3-piperidin-1-ylpropyl)-6-[3-(trifluoromethyl)phenyl]pyrimidine-2-carbonitrile" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C20 H21 F3 N4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2009-12-09 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        374.403 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     KWZ 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3KWZ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
KWZ N1   N1   N 0 1 Y N N N N N 11.805 -17.310 4.194  -1.214 1.296  0.346  N1   KWZ 1  
KWZ C2   C2   C 0 1 Y N N N N N 13.092 -17.052 3.976  -1.279 -0.023 0.492  C2   KWZ 2  
KWZ C3   C3   C 0 1 Y N N N N N 13.421 -16.253 2.860  -0.119 -0.724 0.838  C3   KWZ 3  
KWZ C4   C4   C 0 1 Y N N N N N 12.420 -15.680 2.074  1.055  -0.011 1.016  C4   KWZ 4  
KWZ N5   N5   N 0 1 Y N N N N N 11.146 -15.949 2.369  1.044  1.301  0.854  N5   KWZ 5  
KWZ C6   C6   C 0 1 Y N N N N N 10.863 -16.776 3.391  -0.070 1.940  0.525  C6   KWZ 6  
KWZ C7   C7   C 0 1 Y N N N N N 14.086 -17.727 4.884  -2.561 -0.741 0.291  C7   KWZ 7  
KWZ C8   C8   C 0 1 N N N N N N 12.738 -14.806 0.885  2.329  -0.722 1.390  C8   KWZ 8  
KWZ C9   C9   C 0 1 N N N N N N 12.065 -15.311 -0.380 3.421  -0.380 0.374  C9   KWZ 9  
KWZ C10  C10  C 0 1 N N N N N N 12.555 -16.722 -0.741 4.716  -1.102 0.754  C10  KWZ 10 
KWZ N11  N11  N 0 1 N N N N N N 12.208 -17.278 -2.087 5.764  -0.773 -0.221 N11  KWZ 11 
KWZ C12  C12  C 0 1 Y N N N N N 13.609 -18.379 6.029  -3.712 -0.035 -0.054 C12  KWZ 12 
KWZ C13  C13  C 0 1 Y N N N N N 14.451 -19.068 6.898  -4.902 -0.708 -0.240 C13  KWZ 13 
KWZ C14  C14  C 0 1 Y N N N N N 15.816 -19.112 6.608  -4.954 -2.082 -0.085 C14  KWZ 14 
KWZ C15  C15  C 0 1 Y N N N N N 16.292 -18.469 5.469  -3.815 -2.788 0.257  C15  KWZ 15 
KWZ C16  C16  C 0 1 Y N N N N N 15.448 -17.776 4.604  -2.618 -2.126 0.440  C16  KWZ 16 
KWZ C17  C17  C 0 1 N N N N N N 13.910 -19.747 8.123  -6.148 0.054  -0.613 C17  KWZ 17 
KWZ F18  F18  F 0 1 N N N N N N 12.928 -20.590 7.827  -6.245 0.135  -2.006 F18  KWZ 18 
KWZ F19  F19  F 0 1 N N N N N N 14.889 -20.428 8.638  -7.270 -0.609 -0.104 F19  KWZ 19 
KWZ F20  F20  F 0 1 N N N N N N 13.504 -18.929 9.083  -6.083 1.344  -0.074 F20  KWZ 20 
KWZ C21  C21  C 0 1 N N N N N N 11.078 -16.591 -2.767 6.945  -1.625 -0.031 C21  KWZ 21 
KWZ C22  C22  C 0 1 N N N N N N 10.401 -17.300 -3.954 7.955  -1.356 -1.149 C22  KWZ 22 
KWZ C23  C23  C 0 1 N N N N N N 10.783 -18.760 -4.189 8.358  0.121  -1.123 C23  KWZ 23 
KWZ C24  C24  C 0 1 N N N N N N 11.859 -19.394 -3.297 7.104  0.987  -1.275 C24  KWZ 24 
KWZ C25  C25  C 0 1 N N N N N N 12.081 -18.733 -1.951 6.119  0.650  -0.152 C25  KWZ 25 
KWZ C26  C26  C 0 1 N N N N N N 9.437  -17.010 3.653  -0.036 3.362  0.359  C26  KWZ 26 
KWZ N27  N27  N 0 1 N N N N N N 8.630  -16.366 2.927  -0.010 4.490  0.228  N27  KWZ 27 
KWZ H3   H3   H 0 1 N N N N N N 14.458 -16.083 2.612  -0.138 -1.797 0.965  H3   KWZ 28 
KWZ H8   H8   H 0 1 N N N N N N 12.382 -13.786 1.091  2.645  -0.404 2.383  H8   KWZ 29 
KWZ H8A  H8A  H 0 1 N N N N N N 13.827 -14.804 0.729  2.158  -1.798 1.390  H8A  KWZ 30 
KWZ H9   H9   H 0 1 N N N N N N 10.977 -15.341 -0.218 3.106  -0.697 -0.620 H9   KWZ 31 
KWZ H9A  H9A  H 0 1 N N N N N N 12.303 -14.628 -1.208 3.593  0.697  0.374  H9A  KWZ 32 
KWZ H10  H10  H 0 1 N N N N N N 13.653 -16.696 -0.687 5.031  -0.784 1.748  H10  KWZ 33 
KWZ H10A H10A H 0 0 N N N N N N 12.118 -17.405 0.002  4.544  -2.178 0.754  H10A KWZ 34 
KWZ H12  H12  H 0 1 N N N N N N 12.551 -18.346 6.245  -3.672 1.038  -0.175 H12  KWZ 35 
KWZ H14  H14  H 0 1 N N N N N N 16.496 -19.640 7.261  -5.888 -2.605 -0.231 H14  KWZ 36 
KWZ H15  H15  H 0 1 N N N N N N 17.349 -18.509 5.249  -3.862 -3.861 0.377  H15  KWZ 37 
KWZ H16  H16  H 0 1 N N N N N N 15.845 -17.284 3.729  -1.729 -2.679 0.703  H16  KWZ 38 
KWZ H21  H21  H 0 1 N N N N N N 10.299 -16.438 -2.006 7.403  -1.401 0.933  H21  KWZ 39 
KWZ H21A H21A H 0 0 N N N N N N 11.474 -15.640 -3.153 6.646  -2.672 -0.056 H21A KWZ 40 
KWZ H22  H22  H 0 1 N N N N N N 9.317  -17.274 -3.771 8.838  -1.977 -0.999 H22  KWZ 41 
KWZ H22A H22A H 0 0 N N N N N N 10.674 -16.743 -4.863 7.502  -1.593 -2.112 H22A KWZ 42 
KWZ H23  H23  H 0 1 N N N N N N 9.867  -19.350 -4.041 8.845  0.349  -0.175 H23  KWZ 43 
KWZ H23A H23A H 0 0 N N N N N N 11.157 -18.823 -5.222 9.043  0.326  -1.945 H23A KWZ 44 
KWZ H24  H24  H 0 1 N N N N N N 11.555 -20.434 -3.106 7.379  2.039  -1.214 H24  KWZ 45 
KWZ H24A H24A H 0 0 N N N N N N 12.811 -19.346 -3.847 6.638  0.787  -2.239 H24A KWZ 46 
KWZ H25  H25  H 0 1 N N N N N N 13.006 -19.131 -1.507 5.219  1.255  -0.266 H25  KWZ 47 
KWZ H25A H25A H 0 0 N N N N N N 11.223 -18.956 -1.299 6.581  0.863  0.812  H25A KWZ 48 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
KWZ N1  C2   DOUB Y N 1  
KWZ N1  C6   SING Y N 2  
KWZ C2  C3   SING Y N 3  
KWZ C2  C7   SING Y N 4  
KWZ C3  C4   DOUB Y N 5  
KWZ C4  N5   SING Y N 6  
KWZ C4  C8   SING N N 7  
KWZ N5  C6   DOUB Y N 8  
KWZ C6  C26  SING N N 9  
KWZ C7  C12  DOUB Y N 10 
KWZ C7  C16  SING Y N 11 
KWZ C8  C9   SING N N 12 
KWZ C9  C10  SING N N 13 
KWZ C10 N11  SING N N 14 
KWZ N11 C21  SING N N 15 
KWZ N11 C25  SING N N 16 
KWZ C12 C13  SING Y N 17 
KWZ C13 C14  DOUB Y N 18 
KWZ C13 C17  SING N N 19 
KWZ C14 C15  SING Y N 20 
KWZ C15 C16  DOUB Y N 21 
KWZ C17 F18  SING N N 22 
KWZ C17 F19  SING N N 23 
KWZ C17 F20  SING N N 24 
KWZ C21 C22  SING N N 25 
KWZ C22 C23  SING N N 26 
KWZ C23 C24  SING N N 27 
KWZ C24 C25  SING N N 28 
KWZ C26 N27  TRIP N N 29 
KWZ C3  H3   SING N N 30 
KWZ C8  H8   SING N N 31 
KWZ C8  H8A  SING N N 32 
KWZ C9  H9   SING N N 33 
KWZ C9  H9A  SING N N 34 
KWZ C10 H10  SING N N 35 
KWZ C10 H10A SING N N 36 
KWZ C12 H12  SING N N 37 
KWZ C14 H14  SING N N 38 
KWZ C15 H15  SING N N 39 
KWZ C16 H16  SING N N 40 
KWZ C21 H21  SING N N 41 
KWZ C21 H21A SING N N 42 
KWZ C22 H22  SING N N 43 
KWZ C22 H22A SING N N 44 
KWZ C23 H23  SING N N 45 
KWZ C23 H23A SING N N 46 
KWZ C24 H24  SING N N 47 
KWZ C24 H24A SING N N 48 
KWZ C25 H25  SING N N 49 
KWZ C25 H25A SING N N 50 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
KWZ SMILES_CANONICAL CACTVS               3.352 "FC(F)(F)c1cccc(c1)c2cc(CCCN3CCCCC3)nc(n2)C#N"                                                                                     
KWZ SMILES           CACTVS               3.352 "FC(F)(F)c1cccc(c1)c2cc(CCCN3CCCCC3)nc(n2)C#N"                                                                                     
KWZ SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "c1cc(cc(c1)C(F)(F)F)c2cc(nc(n2)C#N)CCCN3CCCCC3"                                                                                   
KWZ SMILES           "OpenEye OEToolkits" 1.7.0 "c1cc(cc(c1)C(F)(F)F)c2cc(nc(n2)C#N)CCCN3CCCCC3"                                                                                   
KWZ InChI            InChI                1.03  "InChI=1S/C20H21F3N4/c21-20(22,23)16-7-4-6-15(12-16)18-13-17(25-19(14-24)26-18)8-5-11-27-9-2-1-3-10-27/h4,6-7,12-13H,1-3,5,8-11H2" 
KWZ InChIKey         InChI                1.03  XGXDWBUGQKHTSH-UHFFFAOYSA-N                                                                                                        
# 
_pdbx_chem_comp_identifier.comp_id           KWZ 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   1.6.1 
_pdbx_chem_comp_identifier.identifier        "4-(3-piperidin-1-ylpropyl)-6-[3-(trifluoromethyl)phenyl]pyrimidine-2-carbonitrile" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
KWZ "Create component"     2009-12-09 PDBJ 
KWZ "Modify aromatic_flag" 2011-06-04 RCSB 
KWZ "Modify descriptor"    2011-06-04 RCSB 
KWZ "Modify PCM"           2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            KWZ 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C26 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
