data_I8Z
# 
_chem_comp.id                                    I8Z 
_chem_comp.name                                  Alpha-D-ribose-1,2-cyclic-phosphate-5-phosphate 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C5 H10 O10 P2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "[(5~{R},6~{R})-2,6-bis(oxidanyl)-2-oxidanylidene-3~{a},5,6,6~{a}-tetrahydrofuro[2,3-d][1,3,2]dioxaphosphol-5-yl]methyl dihydrogen phosphate" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-02-25 
_chem_comp.pdbx_modified_date                    2023-09-18 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   OBS 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        292.074 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     I8Z 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7Z17 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
I8Z O15 O1  O 0 1 N N N 183.844 166.514 163.177 4.625  0.964  -0.443 O15 I8Z 1  
I8Z P08 P1  P 0 1 N N N 191.173 169.127 164.407 -3.502 -0.598 -0.184 P08 I8Z 2  
I8Z P14 P2  P 0 1 N N N 184.511 167.781 162.713 3.974  -0.319 -0.096 P14 I8Z 3  
I8Z C01 C1  C 0 1 N N N 187.064 168.212 162.299 1.580  0.817  0.245  C01 I8Z 4  
I8Z C02 C2  C 0 1 N N R 188.239 168.548 163.024 0.127  0.638  -0.201 C02 I8Z 5  
I8Z C03 C3  C 0 1 N N R 189.011 167.128 163.630 -0.733 1.799  0.340  C03 I8Z 6  
I8Z C04 C4  C 0 1 N N R 189.670 167.478 164.588 -2.052 1.086  0.740  C04 I8Z 7  
I8Z C05 C5  C 0 1 N N R 188.958 168.935 165.134 -1.518 -0.301 1.189  C05 I8Z 8  
I8Z O06 O2  O 0 1 N N N 187.924 169.283 164.119 -0.400 -0.579 0.339  O06 I8Z 9  
I8Z O07 O3  O 0 1 N N N 189.851 169.757 165.171 -2.561 -1.264 0.962  O07 I8Z 10 
I8Z O09 O4  O 0 1 N N N 191.355 169.783 163.119 -3.497 -1.504 -1.515 O09 I8Z 11 
I8Z O10 O5  O 0 1 N N N 191.037 167.816 164.218 -2.805 0.845  -0.473 O10 I8Z 12 
I8Z O11 O6  O 0 1 N N N 192.502 169.405 165.337 -4.882 -0.417 0.318  O11 I8Z 13 
I8Z O12 O7  O 0 1 N N N 189.887 166.555 162.605 -0.971 2.772  -0.680 O12 I8Z 14 
I8Z O13 O8  O 0 1 N N N 186.084 167.779 163.197 2.388  -0.202 -0.348 O13 I8Z 15 
I8Z O16 O9  O 0 1 N N N 184.445 167.855 161.210 4.578  -1.493 -1.017 O16 I8Z 16 
I8Z O17 O10 O 0 1 N N N 183.798 168.966 163.311 4.248  -0.658 1.454  O17 I8Z 17 
I8Z H4  H12 H 0 1 N N N 183.997 167.088 160.874 5.531  -1.620 -0.918 H4  I8Z 18 
I8Z H5  H13 H 0 1 N N N 183.079 168.663 163.854 3.850  -1.487 1.751  H5  I8Z 19 
I8Z H1  H1  H 0 1 N N N 186.701 169.096 161.755 1.939  1.796  -0.072 H1  I8Z 20 
I8Z H2  H2  H 0 1 N N N 187.290 167.408 161.583 1.639  0.742  1.331  H2  I8Z 21 
I8Z H3  H3  H 0 1 N N N 188.966 169.061 162.378 0.074  0.613  -1.289 H3  I8Z 22 
I8Z H6  H6  H 0 1 N N N 188.210 166.415 163.874 -0.262 2.257  1.210  H6  I8Z 23 
I8Z H7  H7  H 0 1 N N N 189.664 166.774 165.433 -2.621 1.618  1.503  H7  I8Z 24 
I8Z H8  H8  H 0 1 N N N 188.481 168.725 166.103 -1.214 -0.280 2.236  H8  I8Z 25 
I8Z H9  H9  H 0 1 N N N 192.197 170.223 163.103 -3.823 -2.405 -1.379 H9  I8Z 26 
I8Z H10 H10 H 0 1 N N N 189.366 166.283 161.858 -0.168 3.187  -1.022 H10 I8Z 27 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
I8Z O15 P14 DOUB N N 1  
I8Z P08 O07 SING N N 2  
I8Z P08 O10 SING N N 3  
I8Z P08 O11 DOUB N N 4  
I8Z P14 O13 SING N N 5  
I8Z P14 O16 SING N N 6  
I8Z P14 O17 SING N N 7  
I8Z C01 C02 SING N N 8  
I8Z C01 O13 SING N N 9  
I8Z C02 O06 SING N N 10 
I8Z C03 C04 SING N N 11 
I8Z C03 O12 SING N N 12 
I8Z C05 O06 SING N N 13 
I8Z O16 H4  SING N N 14 
I8Z O17 H5  SING N N 15 
I8Z C02 C03 SING N N 16 
I8Z C05 C04 SING N N 17 
I8Z C05 O07 SING N N 18 
I8Z C04 O10 SING N N 19 
I8Z P08 O09 SING N N 20 
I8Z C01 H1  SING N N 21 
I8Z C01 H2  SING N N 22 
I8Z C02 H3  SING N N 23 
I8Z C03 H6  SING N N 24 
I8Z C04 H7  SING N N 25 
I8Z C05 H8  SING N N 26 
I8Z O09 H9  SING N N 27 
I8Z O12 H10 SING N N 28 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
I8Z InChI            InChI                1.06  "InChI=1S/C5H10O10P2/c6-3-2(1-12-16(7,8)9)13-5-4(3)14-17(10,11)15-5/h2-6H,1H2,(H,10,11)(H2,7,8,9)/t2-,3-,4-,5-/m1/s1" 
I8Z InChIKey         InChI                1.06  OXGUIUWFXGIWNM-TXICZTDVSA-N                                                                                           
I8Z SMILES_CANONICAL CACTVS               3.385 "O[C@@H]1[C@@H](CO[P](O)(O)=O)O[C@@H]2O[P](O)(=O)O[C@H]12"                                                            
I8Z SMILES           CACTVS               3.385 "O[CH]1[CH](CO[P](O)(O)=O)O[CH]2O[P](O)(=O)O[CH]12"                                                                   
I8Z SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C([C@@H]1[C@H]([C@@H]2[C@H](O1)OP(=O)(O2)O)O)OP(=O)(O)O"                                                             
I8Z SMILES           "OpenEye OEToolkits" 2.0.7 "C(C1C(C2C(O1)OP(=O)(O2)O)O)OP(=O)(O)O"                                                                               
# 
_pdbx_chem_comp_identifier.comp_id           I8Z 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "[(3~{a}~{R},5~{R},6~{R},6~{a}~{R})-2,6-bis(oxidanyl)-2-oxidanylidene-3~{a},5,6,6~{a}-tetrahydrofuro[2,3-d][1,3,2]dioxaphosphol-5-yl]methyl dihydrogen phosphate" 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      I8Z 
_pdbx_chem_comp_synonyms.name         "[(5~{R},6~{R})-2,6-bis(oxidanyl)-2-oxidanylidene-3~{a},5,6,6~{a}-tetrahydrofuro[2,3-d][1,3,2]dioxaphosphol-5-yl]methyl dihydrogen phosphate" 
_pdbx_chem_comp_synonyms.provenance   PDB 
_pdbx_chem_comp_synonyms.type         ? 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
I8Z "Create component"   2022-02-25 PDBE 
I8Z "Initial release"    2022-05-25 RCSB 
I8Z "Modify descriptor"  2022-08-22 RCSB 
I8Z "Obsolete component" 2022-12-05 PDBE 
# 
