data_I0Z
# 
_chem_comp.id                                    I0Z 
_chem_comp.name                                  "1,3-dimethyl-5-[1-[[(3~{S})-1-(1-propan-2-ylpiperidin-4-yl)carbonylpiperidin-3-yl]methyl]benzimidazol-2-yl]pyridin-2-one" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C29 H39 N5 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-07-25 
_chem_comp.pdbx_modified_date                    2023-10-13 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        489.652 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     I0Z 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8PXA 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
I0Z N1  N1  N 0 1 N N N 13.766 1.503  5.275  -1.492 -1.173 -1.125 N1  I0Z 1  
I0Z N3  N2  N 0 1 Y N N 14.188 0.270  11.909 4.761  -0.239 1.066  N3  I0Z 2  
I0Z C4  C1  C 0 1 N N N 14.905 4.290  3.124  -3.925 -0.180 0.886  C4  I0Z 3  
I0Z C5  C2  C 0 1 N N N 14.832 3.574  4.476  -3.846 -0.661 -0.566 C5  I0Z 4  
I0Z C6  C3  C 0 1 N N N 14.651 4.606  5.596  -4.961 0.005  -1.377 C6  I0Z 5  
I0Z C7  C4  C 0 1 N N N 15.727 5.683  5.507  -6.314 -0.328 -0.745 C7  I0Z 6  
I0Z C8  C5  C 0 1 N N N 13.682 2.585  4.474  -2.507 -0.288 -1.148 C8  I0Z 7  
I0Z C10 C6  C 0 1 N N N 12.271 0.038  6.596  -0.490 -2.622 0.564  C10 I0Z 8  
I0Z C13 C7  C 0 1 N N N 15.578 0.702  8.537  2.266  -0.857 -1.466 C13 I0Z 9  
I0Z C15 C8  C 0 1 Y N N 14.811 -0.957 11.682 5.000  -1.558 0.862  C15 I0Z 10 
I0Z C17 C9  C 0 1 Y N N 15.590 -3.190 12.041 5.909  -3.776 0.994  C17 I0Z 11 
I0Z C20 C10 C 0 1 Y N N 15.441 -0.961 10.443 4.098  -1.997 -0.123 C20 I0Z 12 
I0Z C21 C11 C 0 1 N N N 13.980 2.379  10.764 3.249  1.533  0.226  C21 I0Z 13 
I0Z C22 C12 C 0 1 N N N 14.694 3.404  10.068 3.197  2.226  -1.006 C22 I0Z 14 
I0Z C24 C13 C 0 1 N N N 15.015 5.765  9.306  2.623  4.253  -2.330 C24 I0Z 15 
I0Z C26 C14 C 0 1 N N N 11.144 4.380  12.072 1.812  4.034  2.552  C26 I0Z 16 
I0Z C28 C15 C 0 1 N N N 14.885 1.211  6.172  -0.214 -0.865 -1.782 C28 I0Z 17 
I0Z O1  O1  O 0 1 N N N 12.485 6.141  10.546 1.782  5.211  0.143  O1  I0Z 18 
I0Z C25 C16 C 0 1 N N N 13.012 5.038  10.644 2.235  4.078  0.161  C25 I0Z 19 
I0Z C23 C17 C 0 1 N N N 14.254 4.678  9.997  2.692  3.490  -1.033 C23 I0Z 20 
I0Z N4  N3  N 0 1 N N N 12.365 4.020  11.353 2.294  3.401  1.322  N4  I0Z 21 
I0Z C27 C18 C 0 1 N N N 12.836 2.739  11.397 2.791  2.148  1.370  C27 I0Z 22 
I0Z C14 C19 C 0 1 Y N N 14.447 0.982  10.829 3.786  0.158  0.283  C14 I0Z 23 
I0Z C19 C20 C 0 1 Y N N 16.159 -2.056 9.982  4.114  -3.321 -0.536 C19 I0Z 24 
I0Z C18 C21 C 0 1 Y N N 16.229 -3.172 10.806 5.016  -4.203 0.022  C18 I0Z 25 
I0Z C16 C22 C 0 1 Y N N 14.877 -2.089 12.493 5.908  -2.466 1.417  C16 I0Z 26 
I0Z N2  N4  N 0 1 Y N N 15.180 0.291  9.889  3.342  -0.894 -0.472 N2  I0Z 27 
I0Z C12 C23 C 0 1 N N S 14.426 0.907  7.591  0.918  -1.042 -0.766 C12 I0Z 28 
I0Z C11 C24 C 0 1 N N N 13.421 -0.239 7.558  0.844  -2.447 -0.164 C11 I0Z 29 
I0Z C9  C25 C 0 1 N N N 12.783 0.413  5.218  -1.639 -2.463 -0.437 C9  I0Z 30 
I0Z O   O2  O 0 1 N N N 12.718 2.764  3.754  -2.343 0.810  -1.637 O   I0Z 31 
I0Z C3  C26 C 0 1 N N N 15.981 5.363  3.150  -5.309 -0.508 1.452  C3  I0Z 32 
I0Z N   N5  N 0 1 N N N 15.709 6.356  4.199  -6.340 0.153  0.642  N   I0Z 33 
I0Z C1  C27 C 0 1 N N N 16.528 7.579  4.078  -7.671 -0.026 1.237  C1  I0Z 34 
I0Z C2  C28 C 0 1 N N N 17.954 7.375  4.566  -8.699 0.778  0.437  C2  I0Z 35 
I0Z C   C29 C 0 1 N N N 15.857 8.787  4.710  -8.048 -1.508 1.207  C   I0Z 36 
I0Z H11 H1  H 0 1 N N N 13.933 4.757  2.908  -3.161 -0.684 1.478  H11 I0Z 37 
I0Z H10 H2  H 0 1 N N N 15.142 3.558  2.338  -3.763 0.897  0.922  H10 I0Z 38 
I0Z H12 H3  H 0 1 N N N 15.774 3.030  4.642  -3.968 -1.744 -0.598 H12 I0Z 39 
I0Z H14 H4  H 0 1 N N N 13.660 5.075  5.500  -4.815 1.086  -1.377 H14 I0Z 40 
I0Z H13 H5  H 0 1 N N N 14.724 4.100  6.570  -4.936 -0.365 -2.402 H13 I0Z 41 
I0Z H16 H6  H 0 1 N N N 15.552 6.430  6.296  -7.109 0.157  -1.312 H16 I0Z 42 
I0Z H15 H7  H 0 1 N N N 16.712 5.217  5.656  -6.465 -1.407 -0.758 H15 I0Z 43 
I0Z H19 H8  H 0 1 N N N 11.665 0.867  6.991  -0.533 -3.615 1.012  H19 I0Z 44 
I0Z H20 H9  H 0 1 N N N 11.648 -0.865 6.513  -0.580 -1.867 1.345  H20 I0Z 45 
I0Z H24 H10 H 0 1 N N N 16.234 -0.076 8.119  2.279  0.105  -1.980 H24 I0Z 46 
I0Z H23 H11 H 0 1 N N N 16.134 1.648  8.614  2.412  -1.658 -2.190 H23 I0Z 47 
I0Z H26 H12 H 0 1 N N N 15.650 -4.075 12.658 6.609  -4.477 1.424  H26 I0Z 48 
I0Z H29 H13 H 0 1 N N N 15.623 3.148  9.580  3.552  1.759  -1.913 H29 I0Z 49 
I0Z H31 H14 H 0 1 N N N 14.457 6.710  9.382  1.667  4.058  -2.816 H31 I0Z 50 
I0Z H32 H15 H 0 1 N N N 16.000 5.882  9.781  2.718  5.320  -2.130 H32 I0Z 51 
I0Z H30 H16 H 0 1 N N N 15.148 5.502  8.246  3.434  3.932  -2.984 H30 I0Z 52 
I0Z H34 H17 H 0 1 N N N 10.743 3.492  12.582 1.449  5.036  2.326  H34 I0Z 53 
I0Z H35 H18 H 0 1 N N N 11.372 5.157  12.816 1.000  3.440  2.972  H35 I0Z 54 
I0Z H33 H19 H 0 1 N N N 10.398 4.762  11.359 2.628  4.096  3.272  H33 I0Z 55 
I0Z H37 H20 H 0 1 N N N 15.555 2.083  6.196  -0.062 -1.544 -2.621 H37 I0Z 56 
I0Z H38 H21 H 0 1 N N N 15.432 0.339  5.783  -0.227 0.164  -2.140 H38 I0Z 57 
I0Z H36 H22 H 0 1 N N N 12.283 1.994  11.950 2.829  1.622  2.313  H36 I0Z 58 
I0Z H28 H23 H 0 1 N N N 16.645 -2.041 9.018  3.422  -3.661 -1.292 H28 I0Z 59 
I0Z H27 H24 H 0 1 N N N 16.788 -4.038 10.483 5.028  -5.234 -0.301 H27 I0Z 60 
I0Z H25 H25 H 0 1 N N N 14.383 -2.108 13.453 6.606  -2.140 2.174  H25 I0Z 61 
I0Z H   H26 H 0 1 N N N 13.879 1.795  7.942  0.815  -0.301 0.027  H   I0Z 62 
I0Z H22 H27 H 0 1 N N N 13.012 -0.382 8.569  1.664  -2.584 0.541  H22 I0Z 63 
I0Z H21 H28 H 0 1 N N N 13.938 -1.156 7.239  0.923  -3.188 -0.961 H21 I0Z 64 
I0Z H18 H29 H 0 1 N N N 11.933 0.733  4.598  -2.591 -2.488 0.093  H18 I0Z 65 
I0Z H17 H30 H 0 1 N N N 13.257 -0.469 4.763  -1.603 -3.273 -1.166 H17 I0Z 66 
I0Z H9  H31 H 0 1 N N N 16.008 5.869  2.174  -5.464 -1.587 1.429  H9  I0Z 67 
I0Z H8  H32 H 0 1 N N N 16.955 4.891  3.345  -5.373 -0.154 2.481  H8  I0Z 68 
I0Z H4  H34 H 0 1 N N N 16.603 7.800  3.003  -7.658 0.326  2.269  H4  I0Z 69 
I0Z H6  H35 H 0 1 N N N 18.387 6.490  4.076  -8.712 0.427  -0.595 H6  I0Z 70 
I0Z H7  H36 H 0 1 N N N 18.556 8.262  4.319  -9.687 0.645  0.878  H7  I0Z 71 
I0Z H5  H37 H 0 1 N N N 17.951 7.226  5.656  -8.430 1.834  0.458  H5  I0Z 72 
I0Z H2  H38 H 0 1 N N N 14.833 8.884  4.321  -8.061 -1.859 0.176  H2  I0Z 73 
I0Z H1  H39 H 0 1 N N N 15.824 8.658  5.802  -7.316 -2.081 1.777  H1  I0Z 74 
I0Z H3  H40 H 0 1 N N N 16.429 9.694  4.465  -9.036 -1.641 1.649  H3  I0Z 75 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
I0Z C   C1  SING N N 1  
I0Z C2  C1  SING N N 2  
I0Z C1  N   SING N N 3  
I0Z N   C3  SING N N 4  
I0Z C3  C4  SING N N 5  
I0Z C4  C5  SING N N 6  
I0Z C6  C5  SING N N 7  
I0Z C7  C6  SING N N 8  
I0Z N   C7  SING N N 9  
I0Z C5  C8  SING N N 10 
I0Z O   C8  DOUB N N 11 
I0Z C8  N1  SING N N 12 
I0Z N1  C9  SING N N 13 
I0Z C9  C10 SING N N 14 
I0Z C10 C11 SING N N 15 
I0Z C11 C12 SING N N 16 
I0Z C12 C13 SING N N 17 
I0Z C13 N2  SING N N 18 
I0Z N2  C14 SING Y N 19 
I0Z N3  C14 DOUB Y N 20 
I0Z C15 N3  SING Y N 21 
I0Z C15 C16 DOUB Y N 22 
I0Z C16 C17 SING Y N 23 
I0Z C17 C18 DOUB Y N 24 
I0Z C18 C19 SING Y N 25 
I0Z C19 C20 DOUB Y N 26 
I0Z N2  C20 SING Y N 27 
I0Z C20 C15 SING Y N 28 
I0Z C14 C21 SING N N 29 
I0Z C21 C22 SING N N 30 
I0Z C22 C23 DOUB N N 31 
I0Z C24 C23 SING N N 32 
I0Z C23 C25 SING N N 33 
I0Z C25 O1  DOUB N N 34 
I0Z N4  C25 SING N N 35 
I0Z C26 N4  SING N N 36 
I0Z C27 N4  SING N N 37 
I0Z C21 C27 DOUB N N 38 
I0Z C28 C12 SING N N 39 
I0Z N1  C28 SING N N 40 
I0Z C4  H11 SING N N 41 
I0Z C4  H10 SING N N 42 
I0Z C5  H12 SING N N 43 
I0Z C6  H14 SING N N 44 
I0Z C6  H13 SING N N 45 
I0Z C7  H16 SING N N 46 
I0Z C7  H15 SING N N 47 
I0Z C10 H19 SING N N 48 
I0Z C10 H20 SING N N 49 
I0Z C13 H24 SING N N 50 
I0Z C13 H23 SING N N 51 
I0Z C17 H26 SING N N 52 
I0Z C22 H29 SING N N 53 
I0Z C24 H31 SING N N 54 
I0Z C24 H32 SING N N 55 
I0Z C24 H30 SING N N 56 
I0Z C26 H34 SING N N 57 
I0Z C26 H35 SING N N 58 
I0Z C26 H33 SING N N 59 
I0Z C28 H37 SING N N 60 
I0Z C28 H38 SING N N 61 
I0Z C27 H36 SING N N 62 
I0Z C19 H28 SING N N 63 
I0Z C18 H27 SING N N 64 
I0Z C16 H25 SING N N 65 
I0Z C12 H   SING N N 66 
I0Z C11 H22 SING N N 67 
I0Z C11 H21 SING N N 68 
I0Z C9  H18 SING N N 69 
I0Z C9  H17 SING N N 70 
I0Z C3  H9  SING N N 71 
I0Z C3  H8  SING N N 72 
I0Z C1  H4  SING N N 73 
I0Z C2  H6  SING N N 74 
I0Z C2  H7  SING N N 75 
I0Z C2  H5  SING N N 76 
I0Z C   H2  SING N N 77 
I0Z C   H1  SING N N 78 
I0Z C   H3  SING N N 79 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
I0Z InChI            InChI                1.06  "InChI=1S/C29H39N5O2/c1-20(2)32-14-11-23(12-15-32)29(36)33-13-7-8-22(17-33)18-34-26-10-6-5-9-25(26)30-27(34)24-16-21(3)28(35)31(4)19-24/h5-6,9-10,16,19-20,22-23H,7-8,11-15,17-18H2,1-4H3/t22-/m1/s1" 
I0Z InChIKey         InChI                1.06  WSHVXKCBHNIVJO-JOCHJYFZSA-N                                                                                                                                                                           
I0Z SMILES_CANONICAL CACTVS               3.385 "CC(C)N1CCC(CC1)C(=O)N2CCC[C@H](C2)Cn3c4ccccc4nc3C5=CN(C)C(=O)C(=C5)C"                                                                                                                                
I0Z SMILES           CACTVS               3.385 "CC(C)N1CCC(CC1)C(=O)N2CCC[CH](C2)Cn3c4ccccc4nc3C5=CN(C)C(=O)C(=C5)C"                                                                                                                                 
I0Z SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC1=CC(=CN(C1=O)C)c2nc3ccccc3n2C[C@@H]4CCCN(C4)C(=O)C5CCN(CC5)C(C)C"                                                                                                                                 
I0Z SMILES           "OpenEye OEToolkits" 2.0.7 "CC1=CC(=CN(C1=O)C)c2nc3ccccc3n2CC4CCCN(C4)C(=O)C5CCN(CC5)C(C)C"                                                                                                                                      
# 
_pdbx_chem_comp_identifier.comp_id           I0Z 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "1,3-dimethyl-5-[1-[[(3~{S})-1-(1-propan-2-ylpiperidin-4-yl)carbonylpiperidin-3-yl]methyl]benzimidazol-2-yl]pyridin-2-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
I0Z "Create component" 2023-07-25 PDBE 
I0Z "Initial release"  2023-10-18 RCSB 
# 
