data_EPZ
# 
_chem_comp.id                                    EPZ 
_chem_comp.name                                  "(2R)-2-{[(2R,3R,4R,5S,6R)-3-(acetylamino)-2-{[(S)-{[(R)-{[(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methoxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]oxy}-5-hydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-4-yl]oxy}propanoic acid" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C20 H31 N3 O19 P2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2011-07-12 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        679.416 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     EPZ 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3SU9 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
EPZ C1   C1   C 0 1 N N R N N N -86.020 -1.243  124.049 -4.310 1.284  -0.457 C1   EPZ 1  
EPZ O1   O1   O 0 1 N N N N N N -84.889 -2.078  123.957 -2.891 1.167  -0.344 O1   EPZ 2  
EPZ C2   C2   C 0 1 N N R N N N -85.986 -0.248  122.901 -4.970 -0.003 0.045  C2   EPZ 3  
EPZ N2   N2   N 0 1 N N N N N N -85.993 -0.940  121.623 -4.562 -0.256 1.429  N2   EPZ 4  
EPZ C3   C3   C 0 1 N N R N N N -84.711 0.589   122.974 -4.529 -1.173 -0.840 C3   EPZ 5  
EPZ O3   O3   O 0 1 N N N N N N -84.627 1.501   121.927 -5.197 -2.366 -0.425 O3   EPZ 6  
EPZ C4   C4   C 0 1 N N S N N N -84.735 1.331   124.306 -4.892 -0.862 -2.296 C4   EPZ 7  
EPZ O4   O4   O 0 1 N N N N N N -83.582 2.113   124.398 -4.420 -1.914 -3.141 O4   EPZ 8  
EPZ C5   C5   C 0 1 N N R N N N -84.806 0.290   125.420 -4.235 0.458  -2.707 C5   EPZ 9  
EPZ O5   O5   O 0 1 N N N N N N -85.974 -0.528  125.287 -4.664 1.497  -1.825 O5   EPZ 10 
EPZ C6   C6   C 0 1 N N N N N N -84.803 1.010   126.764 -4.641 0.805  -4.141 C6   EPZ 11 
EPZ O6   O6   O 0 1 N N N N N N -85.996 1.749   126.829 -3.938 1.975  -4.565 O6   EPZ 12 
EPZ C7   C7   C 0 1 N N N N N N -87.144 -1.171  121.001 -5.249 0.300  2.446  C7   EPZ 13 
EPZ O7   O7   O 0 1 N N N N N N -88.209 -0.823  121.467 -6.205 1.010  2.216  O7   EPZ 14 
EPZ C8   C8   C 0 1 N N N N N N -87.089 -1.873  119.687 -4.829 0.041  3.870  C8   EPZ 15 
EPZ PA   PA   P 0 1 N N N N N N -84.685 -3.686  127.495 0.908  2.556  0.775  PA   EPZ 16 
EPZ PB   PB   P 0 1 N N N N N N -84.895 -3.461  124.653 -1.924 2.429  -0.091 PB   EPZ 17 
EPZ O1A  O1A  O 0 1 N N N N N N -84.980 -5.097  127.337 0.556  3.181  2.070  O1A  EPZ 18 
EPZ O1B  O1B  O 0 1 N N N N N N -86.192 -4.038  124.673 -1.989 3.417  -1.361 O1B  EPZ 19 
EPZ C1D  C1D  C 0 1 N N R N N N -80.938 -6.033  129.750 5.609  -0.940 0.647  C1D  EPZ 20 
EPZ C1E  C1E  C 0 1 N N N N N N -84.039 1.184   119.586 -5.297 -4.009 1.317  C1E  EPZ 21 
EPZ O1E  O1E  O 0 1 N N N N N N -84.955 1.927   119.247 -4.761 -4.809 2.253  O1E  EPZ 22 
EPZ N1U  N1U  N 0 1 N N N N N N -81.624 -7.239  129.272 6.462  -1.004 -0.543 N1U  EPZ 23 
EPZ O2A  O2A  O 0 1 N N N N N N -85.602 -2.852  128.231 1.516  3.673  -0.212 O2A  EPZ 24 
EPZ O2B  O2B  O 0 1 N N N N N N -83.894 -4.203  123.962 -2.365 3.154  1.121  O2B  EPZ 25 
EPZ C2D  C2D  C 0 1 N N R N N N -80.437 -5.170  128.634 6.385  -0.330 1.836  C2D  EPZ 26 
EPZ O2D  O2D  O 0 1 N N N N N N -79.091 -5.466  128.381 6.883  -1.361 2.691  O2D  EPZ 27 
EPZ C2E  C2E  C 0 1 N N R N N N -83.556 1.199   121.035 -4.401 -3.222 0.397  C2E  EPZ 28 
EPZ O2E  O2E  O 0 1 N N N N N N -83.539 0.429   118.739 -6.498 -3.921 1.213  O2E  EPZ 29 
EPZ C2U  C2U  C 0 1 N N N N N N -81.067 -8.497  129.625 6.751  -2.197 -1.092 C2U  EPZ 30 
EPZ O2U  O2U  O 0 1 N N N N N N -80.051 -8.544  130.306 6.301  -3.211 -0.595 O2U  EPZ 31 
EPZ O3A  O3A  O 0 1 N N N N N N -84.376 -3.073  126.080 -0.412 1.915  0.112  O3A  EPZ 32 
EPZ C3D  C3D  C 0 1 N N S N N N -80.645 -3.768  129.146 5.330  0.523  2.575  C3D  EPZ 33 
EPZ O3D  O3D  O 0 1 N N N N N N -79.456 -3.406  129.866 5.145  0.045  3.908  O3D  EPZ 34 
EPZ C3E  C3E  C 0 1 N N N N N N -82.461 2.237   121.235 -3.607 -4.184 -0.488 C3E  EPZ 35 
EPZ N3U  N3U  N 0 1 N N N N N N -81.627 -9.652  129.225 7.531  -2.284 -2.186 N3U  EPZ 36 
EPZ C4D  C4D  C 0 1 N N R N N N -81.844 -3.876  130.066 4.042  0.328  1.745  C4D  EPZ 37 
EPZ O4D  O4D  O 0 1 N N N N N N -81.773 -5.203  130.560 4.504  -0.038 0.427  O4D  EPZ 38 
EPZ C4U  C4U  C 0 1 N N N N N N -82.746 -9.626  128.470 8.038  -1.169 -2.750 C4U  EPZ 39 
EPZ O4U  O4U  O 0 1 N N N N N N -83.219 -10.681 128.113 8.744  -1.247 -3.739 O4U  EPZ 40 
EPZ C5D  C5D  C 0 1 N N N N N N -83.192 -3.920  129.443 3.243  1.631  1.687  C5D  EPZ 41 
EPZ O5D  O5D  O 0 1 N N N N N N -83.288 -3.545  128.126 2.002  1.400  1.017  O5D  EPZ 42 
EPZ C5U  C5U  C 0 1 N N N N N N -83.324 -8.414  128.109 7.741  0.093  -2.181 C5U  EPZ 43 
EPZ C6U  C6U  C 0 1 N N N N N N -82.737 -7.214  128.526 6.951  0.152  -1.087 C6U  EPZ 44 
EPZ H1   H1   H 0 1 N N N N N N -86.939 -1.845  124.001 -4.654 2.126  0.143  H1   EPZ 45 
EPZ H2   H2   H 0 1 N N N N N N -86.875 0.394   122.985 -6.054 0.101  -0.003 H2   EPZ 46 
EPZ HN2  HN2  H 0 1 N N N N N N -85.133 -1.242  121.212 -3.797 -0.823 1.613  HN2  EPZ 47 
EPZ H3   H3   H 0 1 N N N N N N -83.834 -0.070  122.893 -3.451 -1.309 -0.754 H3   EPZ 48 
EPZ H4   H4   H 0 1 N N N N N N -85.606 1.998   124.391 -5.974 -0.777 -2.391 H4   EPZ 49 
EPZ HO4  HO4  H 0 1 N N N N N N -83.582 2.582   125.224 -4.615 -1.783 -4.078 HO4  EPZ 50 
EPZ H5   H5   H 0 1 N N N N N N -83.932 -0.374  125.353 -3.151 0.358  -2.651 H5   EPZ 51 
EPZ H6   H6   H 0 1 N N N N N N -84.757 0.283   127.588 -4.394 -0.026 -4.800 H6   EPZ 52 
EPZ H6A  H6A  H 0 1 N N N N N N -83.933 1.679   126.839 -5.714 0.993  -4.178 H6A  EPZ 53 
EPZ HO6  HO6  H 0 1 N N N N N N -86.035 2.216   127.655 -4.147 2.254  -5.467 HO6  EPZ 54 
EPZ H8   H8   H 0 1 N N N N N N -88.108 -1.988  119.289 -4.111 0.799  4.181  H8   EPZ 55 
EPZ H8A  H8A  H 0 1 N N N N N N -86.484 -1.284  118.982 -5.703 0.080  4.520  H8A  EPZ 56 
EPZ H8B  H8B  H 0 1 N N N N N N -86.634 -2.866  119.821 -4.369 -0.945 3.939  H8B  EPZ 57 
EPZ HO1B HO1B H 0 0 N N N N N N -86.180 -4.862  124.201 -1.713 3.008  -2.193 HO1B EPZ 58 
EPZ H1D  H1D  H 0 1 N N N N N N -80.098 -6.426  130.341 5.243  -1.934 0.904  H1D  EPZ 59 
EPZ HO1E HO1E H 0 0 N N N N N N -85.146 1.794   118.326 -5.376 -5.294 2.821  HO1E EPZ 60 
EPZ HO2A HO2A H 0 0 N N N N N N -86.332 -3.377  128.537 1.770  3.334  -1.081 HO2A EPZ 61 
EPZ H2D  H2D  H 0 1 N N N N N N -80.954 -5.321  127.675 7.201  0.297  1.477  H2D  EPZ 62 
EPZ HO2D HO2D H 0 0 N N N N N N -78.774 -4.918  127.673 7.379  -1.034 3.454  HO2D EPZ 63 
EPZ H2E  H2E  H 0 1 N N N N N N -83.161 0.196   121.253 -3.712 -2.619 0.988  H2E  EPZ 64 
EPZ H3D  H3D  H 0 1 N N N N N N -80.821 -3.010  128.369 5.626  1.572  2.583  H3D  EPZ 65 
EPZ HO3D HO3D H 0 0 N N N N N N -79.548 -2.524  130.207 5.940  0.089  4.456  HO3D EPZ 66 
EPZ H3E  H3E  H 0 1 N N N N N N -81.623 2.023   120.555 -4.295 -4.843 -1.018 H3E  EPZ 67 
EPZ H3EA H3EA H 0 0 N N N N N N -82.861 3.238   121.019 -3.021 -3.615 -1.210 H3EA EPZ 68 
EPZ H3EB H3EB H 0 0 N N N N N N -82.107 2.200   122.276 -2.939 -4.781 0.132  H3EB EPZ 69 
EPZ H4D  H4D  H 0 1 N N N N N N -81.780 -3.001  130.729 3.435  -0.472 2.170  H4D  EPZ 70 
EPZ H5D  H5D  H 0 1 N N N N N N -83.541 -4.961  129.506 3.049  1.984  2.700  H5D  EPZ 71 
EPZ H5DA H5DA H 0 0 N N N N N N -83.834 -3.237  130.019 3.815  2.384  1.144  H5DA EPZ 72 
EPZ H5U  H5U  H 0 1 N N N N N N -84.222 -8.399  127.509 8.138  0.997  -2.619 H5U  EPZ 73 
EPZ H6U  H6U  H 0 1 N N N N N N -83.180 -6.269  128.247 6.714  1.106  -0.640 H6U  EPZ 74 
EPZ HN3U HN3U H 0 0 N N N N N N -81.217 -10.526 129.485 7.730  -3.152 -2.569 HN3U EPZ 75 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
EPZ C2  C1   SING N N 1  
EPZ O1  C1   SING N N 2  
EPZ C1  O5   SING N N 3  
EPZ C1  H1   SING N N 4  
EPZ O1  PB   SING N N 5  
EPZ N2  C2   SING N N 6  
EPZ C2  C3   SING N N 7  
EPZ C2  H2   SING N N 8  
EPZ C7  N2   SING N N 9  
EPZ N2  HN2  SING N N 10 
EPZ O3  C3   SING N N 11 
EPZ C3  C4   SING N N 12 
EPZ C3  H3   SING N N 13 
EPZ C2E O3   SING N N 14 
EPZ C4  O4   SING N N 15 
EPZ C4  C5   SING N N 16 
EPZ C4  H4   SING N N 17 
EPZ O4  HO4  SING N N 18 
EPZ O5  C5   SING N N 19 
EPZ C5  C6   SING N N 20 
EPZ C5  H5   SING N N 21 
EPZ C6  O6   SING N N 22 
EPZ C6  H6   SING N N 23 
EPZ C6  H6A  SING N N 24 
EPZ O6  HO6  SING N N 25 
EPZ C8  C7   SING N N 26 
EPZ C7  O7   DOUB N N 27 
EPZ C8  H8   SING N N 28 
EPZ C8  H8A  SING N N 29 
EPZ C8  H8B  SING N N 30 
EPZ O3A PA   SING N N 31 
EPZ O1A PA   DOUB N N 32 
EPZ PA  O5D  SING N N 33 
EPZ PA  O2A  SING N N 34 
EPZ O2B PB   DOUB N N 35 
EPZ PB  O1B  SING N N 36 
EPZ PB  O3A  SING N N 37 
EPZ O1B HO1B SING N N 38 
EPZ C2D C1D  SING N N 39 
EPZ N1U C1D  SING N N 40 
EPZ C1D O4D  SING N N 41 
EPZ C1D H1D  SING N N 42 
EPZ O2E C1E  DOUB N N 43 
EPZ O1E C1E  SING N N 44 
EPZ C1E C2E  SING N N 45 
EPZ O1E HO1E SING N N 46 
EPZ C6U N1U  SING N N 47 
EPZ N1U C2U  SING N N 48 
EPZ O2A HO2A SING N N 49 
EPZ O2D C2D  SING N N 50 
EPZ C2D C3D  SING N N 51 
EPZ C2D H2D  SING N N 52 
EPZ O2D HO2D SING N N 53 
EPZ C2E C3E  SING N N 54 
EPZ C2E H2E  SING N N 55 
EPZ N3U C2U  SING N N 56 
EPZ C2U O2U  DOUB N N 57 
EPZ C3D O3D  SING N N 58 
EPZ C3D C4D  SING N N 59 
EPZ C3D H3D  SING N N 60 
EPZ O3D HO3D SING N N 61 
EPZ C3E H3E  SING N N 62 
EPZ C3E H3EA SING N N 63 
EPZ C3E H3EB SING N N 64 
EPZ C4U N3U  SING N N 65 
EPZ C5D C4D  SING N N 66 
EPZ C4D O4D  SING N N 67 
EPZ C4D H4D  SING N N 68 
EPZ C5U C4U  SING N N 69 
EPZ O4U C4U  DOUB N N 70 
EPZ O5D C5D  SING N N 71 
EPZ C5D H5D  SING N N 72 
EPZ C5D H5DA SING N N 73 
EPZ C5U C6U  DOUB N N 74 
EPZ C5U H5U  SING N N 75 
EPZ C6U H6U  SING N N 76 
EPZ N3U HN3U SING N N 77 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
EPZ SMILES           ACDLabs              12.01 "O=C1C=CN(C(=O)N1)C2OC(C(O)C2O)COP(=O)(OP(=O)(OC3OC(C(O)C(OC(C(=O)O)C)C3NC(=O)C)CO)O)O"                                                                                                                                                                                                                
EPZ InChI            InChI                1.03  "InChI=1S/C20H31N3O19P2/c1-7(18(30)31)38-16-12(21-8(2)25)19(40-9(5-24)14(16)28)41-44(35,36)42-43(33,34)37-6-10-13(27)15(29)17(39-10)23-4-3-11(26)22-20(23)32/h3-4,7,9-10,12-17,19,24,27-29H,5-6H2,1-2H3,(H,21,25)(H,30,31)(H,33,34)(H,35,36)(H,22,26,32)/t7-,9-,10-,12-,13-,14-,15-,16-,17-,19-/m1/s1" 
EPZ InChIKey         InChI                1.03  NQBRVZNDBBMBLJ-MQTLHLSBSA-N                                                                                                                                                                                                                                                                            
EPZ SMILES_CANONICAL CACTVS               3.370 "C[C@@H](O[C@H]1[C@H](O)[C@@H](CO)O[C@H](O[P](O)(=O)O[P](O)(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)N3C=CC(=O)NC3=O)[C@@H]1NC(C)=O)C(O)=O"                                                                                                                                                                  
EPZ SMILES           CACTVS               3.370 "C[CH](O[CH]1[CH](O)[CH](CO)O[CH](O[P](O)(=O)O[P](O)(=O)OC[CH]2O[CH]([CH](O)[CH]2O)N3C=CC(=O)NC3=O)[CH]1NC(C)=O)C(O)=O"                                                                                                                                                                                
EPZ SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 "C[C@H](C(=O)O)O[C@@H]1[C@H]([C@H](O[C@@H]([C@H]1O)CO)O[P@](=O)(O)O[P@](=O)(O)OC[C@@H]2[C@H]([C@H]([C@@H](O2)N3C=CC(=O)NC3=O)O)O)NC(=O)C"                                                                                                                                                              
EPZ SMILES           "OpenEye OEToolkits" 1.7.2 "CC(C(=O)O)OC1C(C(OC(C1O)CO)OP(=O)(O)OP(=O)(O)OCC2C(C(C(O2)N3C=CC(=O)NC3=O)O)O)NC(=O)C"                                                                                                                                                                                                                
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
EPZ "SYSTEMATIC NAME" ACDLabs              12.01 "(2R)-2-{[(2R,3R,4R,5S,6R)-3-(acetylamino)-2-{[(S)-{[(R)-{[(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methoxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]oxy}-5-hydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-4-yl]oxy}propanoic acid (non-preferred name)" 
EPZ "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 "(2R)-2-[(2R,3R,4R,5S,6R)-3-acetamido-2-[[[(2R,3S,4R,5R)-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-6-(hydroxymethyl)-5-oxidanyl-oxan-4-yl]oxypropanoic acid"                                                             
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
EPZ "Create component" 2011-07-12 RCSB 
EPZ "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            EPZ 
_pdbx_chem_comp_pcm.modified_residue_id                ALA 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid backbone" 
_pdbx_chem_comp_pcm.polypeptide_position               N-terminal 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C1E 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   N 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
