data_EHZ
# 
_chem_comp.id                                    EHZ 
_chem_comp.name                                  "~{S}-[2-[3-[[(2~{R})-3,3-dimethyl-2-oxidanyl-4-phosphonooxy-butanoyl]amino]propanoylamino]ethyl] (3~{S})-3-oxidanyltetradecanethioate" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H49 N2 O9 P S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2018-03-23 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        584.703 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     EHZ 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6G2J 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
EHZ O1  O1  O 0 1 N N N N N N 257.882 230.495 267.045 5.623   -1.694 0.911  O1  EHZ 1  
EHZ C1  C1  C 0 1 N N N N N N 257.475 238.190 267.454 12.824  0.983  0.605  C1  EHZ 2  
EHZ C2  C2  C 0 1 N N N N N N 256.945 236.861 267.932 11.816  0.309  -0.327 C2  EHZ 3  
EHZ C3  C3  C 0 1 N N N N N N 257.887 235.698 267.732 10.425  0.353  0.309  C3  EHZ 4  
EHZ C4  C4  C 0 1 N N N N N N 257.385 234.402 268.320 9.416   -0.322 -0.623 C4  EHZ 5  
EHZ O2  O2  O 0 1 N N N N N N 259.989 228.908 265.739 3.065   -0.803 0.402  O2  EHZ 6  
EHZ C5  C5  C 0 1 N N N N N N 258.292 233.211 268.124 8.025   -0.277 0.014  C5  EHZ 7  
EHZ C6  C6  C 0 1 N N N N N N 258.499 232.803 266.689 7.017   -0.952 -0.918 C6  EHZ 8  
EHZ C7  C7  C 0 1 N N S N N N 258.868 231.344 266.464 5.626   -0.908 -0.282 C7  EHZ 9  
EHZ C8  C8  C 0 1 N N N N N N 260.236 230.930 266.993 4.597   -1.469 -1.265 C8  EHZ 10 
EHZ C10 C9  C 0 1 N N N N N N 262.599 227.662 265.971 0.531   -1.416 -0.416 C10 EHZ 11 
EHZ C11 C10 C 0 1 N N N N N N 262.560 227.883 264.476 -0.821  -1.819 -1.009 C11 EHZ 12 
EHZ C12 C11 C 0 1 N N N N N N 264.894 227.426 263.910 -3.175  -1.724 -0.386 C12 EHZ 13 
EHZ C13 C12 C 0 1 N N N N N N 265.907 226.404 263.440 -4.275  -1.358 0.577  C13 EHZ 14 
EHZ C14 C13 C 0 1 N N N N N N 267.294 227.003 263.502 -5.627  -1.761 -0.015 C14 EHZ 15 
EHZ C15 C14 C 0 1 N N N N N N 269.226 225.972 262.403 -7.980  -1.667 0.608  C15 EHZ 16 
EHZ C16 C15 C 0 1 N N R N N N 268.813 226.634 261.100 -9.070  -1.404 1.615  C16 EHZ 17 
EHZ C17 C16 C 0 1 N N N N N N 269.640 227.857 260.682 -9.319  0.102  1.716  C17 EHZ 18 
EHZ C18 C17 C 0 1 N N N N N N 269.539 228.952 261.747 -10.518 0.361  2.630  C18 EHZ 19 
EHZ C19 C18 C 0 1 N N N N N N 271.109 227.464 260.508 -8.079  0.786  2.296  C19 EHZ 20 
EHZ C20 C19 C 0 1 N N N N N N 269.088 228.372 259.356 -9.608  0.666  0.324  C20 EHZ 21 
EHZ C21 C20 C 0 1 N N N N N N 256.539 239.353 267.668 14.215  0.939  -0.031 C21 EHZ 22 
EHZ C22 C21 C 0 1 N N N N N N 255.234 239.246 266.916 15.224  1.614  0.901  C22 EHZ 23 
EHZ C9  C22 C 0 1 N N N N N N 260.670 229.592 266.464 3.214   -1.313 -0.689 C9  EHZ 24 
EHZ N1  N1  N 0 1 N N N N N N 263.597 227.123 263.795 -1.890  -1.462 -0.073 N1  EHZ 25 
EHZ N2  N2  N 0 1 N N N N N N 268.352 226.006 263.400 -6.696  -1.405 0.921  N2  EHZ 26 
EHZ O3  O3  O 0 1 N N N N N N 265.264 228.481 264.418 -3.446  -2.255 -1.442 O3  EHZ 27 
EHZ O4  O4  O 0 1 N N N N N N 270.303 225.386 262.478 -8.259  -2.114 -0.484 O4  EHZ 28 
EHZ O5  O5  O 0 1 N N N N N N 268.864 225.681 260.052 -10.270 -2.058 1.200  O5  EHZ 29 
EHZ O6  O6  O 0 1 N N N N N N 269.863 229.517 258.910 -9.840  2.073  0.418  O6  EHZ 30 
EHZ O7  O7  O 0 1 N N N N N N 270.347 228.981 256.516 -8.907  3.020  -1.850 O7  EHZ 31 
EHZ O9  O8  O 0 1 N N N N N N 268.159 230.056 257.170 -11.347 2.439  -1.574 O9  EHZ 32 
EHZ P1  P1  P 0 1 N N N N N N 269.659 230.015 257.387 -10.175 2.993  -0.860 P1  EHZ 33 
EHZ S1  S1  S 0 1 N N N N N N 262.288 229.132 266.983 1.852   -1.856 -1.573 S1  EHZ 34 
EHZ H1  H1  H 0 1 N N N N N N 258.113 229.587 266.888 5.842   -2.625 0.769  H1  EHZ 35 
EHZ H2  H2  H 0 1 N N N N N N 257.681 238.110 266.377 12.532  2.021  0.767  H2  EHZ 36 
EHZ H3  H3  H 0 1 N N N N N N 258.411 238.400 267.992 12.845  0.458  1.560  H3  EHZ 37 
EHZ H4  H4  H 0 1 N N N N N N 256.728 236.945 269.007 11.795  0.834  -1.282 H4  EHZ 38 
EHZ H5  H5  H 0 1 N N N N N N 256.015 236.646 267.386 12.108  -0.729 -0.489 H5  EHZ 39 
EHZ H6  H6  H 0 1 N N N N N N 258.037 235.554 266.652 10.445  -0.172 1.264  H6  EHZ 40 
EHZ H7  H7  H 0 1 N N N N N N 258.849 235.945 268.206 10.132  1.390  0.472  H7  EHZ 41 
EHZ H8  H8  H 0 1 N N N N N N 257.247 234.550 269.401 9.396   0.204  -1.577 H8  EHZ 42 
EHZ H9  H9  H 0 1 N N N N N N 256.415 234.171 267.855 9.709   -1.359 -0.785 H9  EHZ 43 
EHZ H10 H10 H 0 1 N N N N N N 257.856 232.357 268.663 8.046   -0.803 0.968  H10 EHZ 44 
EHZ H11 H11 H 0 1 N N N N N N 259.274 233.454 268.555 7.733   0.760  0.176  H11 EHZ 45 
EHZ H12 H12 H 0 1 N N N N N N 259.307 233.424 266.274 6.996   -0.426 -1.873 H12 EHZ 46 
EHZ H13 H13 H 0 1 N N N N N N 257.566 233.004 266.143 7.309   -1.989 -1.081 H13 EHZ 47 
EHZ H14 H14 H 0 1 N N N N N N 258.875 231.174 265.377 5.370   0.123  -0.038 H14 EHZ 48 
EHZ H15 H15 H 0 1 N N N N N N 260.976 231.686 266.692 4.661   -0.926 -2.208 H15 EHZ 49 
EHZ H16 H16 H 0 1 N N N N N N 260.190 230.879 268.091 4.801   -2.526 -1.441 H16 EHZ 50 
EHZ H17 H17 H 0 1 N N N N N N 261.837 226.910 266.223 0.545   -0.340 -0.241 H17 EHZ 51 
EHZ H18 H18 H 0 1 N N N N N N 263.596 227.276 266.231 0.684   -1.940 0.527  H18 EHZ 52 
EHZ H19 H19 H 0 1 N N N N N N 262.708 228.953 264.269 -0.975  -1.294 -1.952 H19 EHZ 53 
EHZ H20 H20 H 0 1 N N N N N N 261.578 227.568 264.094 -0.835  -2.894 -1.185 H20 EHZ 54 
EHZ H21 H21 H 0 1 N N N N N N 265.680 226.112 262.404 -4.121  -1.883 1.521  H21 EHZ 55 
EHZ H22 H22 H 0 1 N N N N N N 265.861 225.517 264.089 -4.261  -0.283 0.753  H22 EHZ 56 
EHZ H23 H23 H 0 1 N N N N N N 267.404 227.533 264.459 -5.780  -1.236 -0.959 H23 EHZ 57 
EHZ H24 H24 H 0 1 N N N N N N 267.405 227.717 262.673 -5.641  -2.836 -0.191 H24 EHZ 58 
EHZ H25 H25 H 0 1 N N N N N N 267.773 226.971 261.219 -8.765  -1.788 2.589  H25 EHZ 59 
EHZ H26 H26 H 0 1 N N N N N N 269.938 228.575 262.700 -10.352 -0.121 3.593  H26 EHZ 60 
EHZ H27 H27 H 0 1 N N N N N N 270.121 229.829 261.427 -10.638 1.434  2.777  H27 EHZ 61 
EHZ H28 H28 H 0 1 N N N N N N 268.485 229.239 261.879 -11.419 -0.046 2.171  H28 EHZ 62 
EHZ H29 H29 H 0 1 N N N N N N 271.506 227.093 261.465 -7.250  0.691  1.595  H29 EHZ 63 
EHZ H30 H30 H 0 1 N N N N N N 271.189 226.674 259.747 -8.292  1.842  2.465  H30 EHZ 64 
EHZ H31 H31 H 0 1 N N N N N N 271.688 228.343 260.187 -7.812  0.313  3.241  H31 EHZ 65 
EHZ H32 H32 H 0 1 N N N N N N 268.038 228.672 259.490 -8.753  0.482  -0.327 H32 EHZ 66 
EHZ H33 H33 H 0 1 N N N N N N 269.148 227.574 258.601 -10.491 0.179  -0.090 H33 EHZ 67 
EHZ H34 H34 H 0 1 N N N N N N 257.050 240.271 267.342 14.508  -0.098 -0.194 H34 EHZ 68 
EHZ H35 H35 H 0 1 N N N N N N 256.313 239.420 268.742 14.195  1.465  -0.986 H35 EHZ 69 
EHZ H36 H36 H 0 1 N N N N N N 254.534 239.388 267.752 14.931  2.651  1.063  H36 EHZ 70 
EHZ H37 H37 H 0 1 N N N N N N 255.292 240.172 266.325 15.244  1.088  1.855  H37 EHZ 71 
EHZ H39 H39 H 0 1 N N N N N N 263.331 226.348 263.222 -1.674  -1.038 0.772  H39 EHZ 72 
EHZ H40 H40 H 0 1 N N N N N N 268.422 225.313 264.117 -6.479  -0.980 1.766  H40 EHZ 73 
EHZ H41 H41 H 0 1 N N N N N N 269.438 224.966 260.301 -10.601 -1.765 0.340  H41 EHZ 74 
EHZ H42 H42 H 0 1 N N N N N N 269.700 228.536 255.981 -8.101  3.372  -1.448 H42 EHZ 75 
EHZ OP3 OP3 O 0 1 N N N N N N 270.241 231.440 257.084 -10.505 4.491  -0.370 OP3 EHZ 76 
EHZ C23 C23 C 0 1 N N N N N N ?       ?       ?       16.615  1.570  0.264  C23 EHZ 77 
EHZ C24 C24 C 0 1 N N N N N N ?       ?       ?       17.623  2.244  1.196  C24 EHZ 78 
EHZ C25 C25 C 0 1 N N N N N N ?       ?       ?       19.014  2.200  0.560  C25 EHZ 79 
EHZ H44 H44 H 0 1 N N N N N N 269.535 232.023 256.830 -10.717 5.102  -1.089 H44 EHZ 80 
EHZ H45 H45 H 0 1 N N N N N N ?       ?       ?       16.907  0.532  0.102  H45 EHZ 81 
EHZ H46 H46 H 0 1 N N N N N N ?       ?       ?       16.594  2.095  -0.690 H46 EHZ 82 
EHZ H47 H47 H 0 1 N N N N N N ?       ?       ?       17.331  3.282  1.359  H47 EHZ 83 
EHZ H48 H48 H 0 1 N N N N N N ?       ?       ?       17.644  1.719  2.151  H48 EHZ 84 
EHZ H49 H49 H 0 1 N N N N N N ?       ?       ?       19.307  1.163  0.398  H49 EHZ 85 
EHZ H50 H50 H 0 1 N N N N N N ?       ?       ?       18.994  2.726  -0.395 H50 EHZ 86 
EHZ H51 H51 H 0 1 N N N N N N ?       ?       ?       19.733  2.681  1.224  H51 EHZ 87 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
EHZ O7  P1  SING N N 1  
EHZ O9  P1  DOUB N N 2  
EHZ P1  O6  SING N N 3  
EHZ O6  C20 SING N N 4  
EHZ C20 C17 SING N N 5  
EHZ O5  C16 SING N N 6  
EHZ C19 C17 SING N N 7  
EHZ C17 C16 SING N N 8  
EHZ C17 C18 SING N N 9  
EHZ C16 C15 SING N N 10 
EHZ C15 O4  DOUB N N 11 
EHZ C15 N2  SING N N 12 
EHZ N2  C14 SING N N 13 
EHZ C13 C14 SING N N 14 
EHZ C13 C12 SING N N 15 
EHZ N1  C12 SING N N 16 
EHZ N1  C11 SING N N 17 
EHZ C12 O3  DOUB N N 18 
EHZ C11 C10 SING N N 19 
EHZ O2  C9  DOUB N N 20 
EHZ C10 S1  SING N N 21 
EHZ C7  C6  SING N N 22 
EHZ C7  C8  SING N N 23 
EHZ C7  O1  SING N N 24 
EHZ C9  S1  SING N N 25 
EHZ C9  C8  SING N N 26 
EHZ C6  C5  SING N N 27 
EHZ C22 C21 SING N N 28 
EHZ C1  C21 SING N N 29 
EHZ C1  C2  SING N N 30 
EHZ C3  C2  SING N N 31 
EHZ C3  C4  SING N N 32 
EHZ C5  C4  SING N N 33 
EHZ O1  H1  SING N N 34 
EHZ C1  H2  SING N N 35 
EHZ C1  H3  SING N N 36 
EHZ C2  H4  SING N N 37 
EHZ C2  H5  SING N N 38 
EHZ C3  H6  SING N N 39 
EHZ C3  H7  SING N N 40 
EHZ C4  H8  SING N N 41 
EHZ C4  H9  SING N N 42 
EHZ C5  H10 SING N N 43 
EHZ C5  H11 SING N N 44 
EHZ C6  H12 SING N N 45 
EHZ C6  H13 SING N N 46 
EHZ C7  H14 SING N N 47 
EHZ C8  H15 SING N N 48 
EHZ C8  H16 SING N N 49 
EHZ C10 H17 SING N N 50 
EHZ C10 H18 SING N N 51 
EHZ C11 H19 SING N N 52 
EHZ C11 H20 SING N N 53 
EHZ C13 H21 SING N N 54 
EHZ C13 H22 SING N N 55 
EHZ C14 H23 SING N N 56 
EHZ C14 H24 SING N N 57 
EHZ C16 H25 SING N N 58 
EHZ C18 H26 SING N N 59 
EHZ C18 H27 SING N N 60 
EHZ C18 H28 SING N N 61 
EHZ C19 H29 SING N N 62 
EHZ C19 H30 SING N N 63 
EHZ C19 H31 SING N N 64 
EHZ C20 H32 SING N N 65 
EHZ C20 H33 SING N N 66 
EHZ C21 H34 SING N N 67 
EHZ C21 H35 SING N N 68 
EHZ C22 H36 SING N N 69 
EHZ C22 H37 SING N N 70 
EHZ N1  H39 SING N N 71 
EHZ N2  H40 SING N N 72 
EHZ O5  H41 SING N N 73 
EHZ O7  H42 SING N N 74 
EHZ P1  OP3 SING N N 75 
EHZ C22 C23 SING N N 76 
EHZ C23 C24 SING N N 77 
EHZ C24 C25 SING N N 78 
EHZ OP3 H44 SING N N 79 
EHZ C23 H45 SING N N 80 
EHZ C23 H46 SING N N 81 
EHZ C24 H47 SING N N 82 
EHZ C24 H48 SING N N 83 
EHZ C25 H49 SING N N 84 
EHZ C25 H50 SING N N 85 
EHZ C25 H51 SING N N 86 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
EHZ InChI            InChI                1.03  "InChI=1S/C25H49N2O9PS/c1-4-5-6-7-8-9-10-11-12-13-20(28)18-22(30)38-17-16-26-21(29)14-15-27-24(32)23(31)25(2,3)19-36-37(33,34)35/h20,23,28,31H,4-19H2,1-3H3,(H,26,29)(H,27,32)(H2,33,34,35)/t20-,23-/m0/s1" 
EHZ InChIKey         InChI                1.03  JYSKQPQRUCZFIQ-REWPJTCUSA-N                                                                                                                                                                                 
EHZ SMILES_CANONICAL CACTVS               3.385 "CCCCCCCCCCC[C@H](O)CC(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)CO[P](O)(O)=O"                                                                                                                                    
EHZ SMILES           CACTVS               3.385 "CCCCCCCCCCC[CH](O)CC(=O)SCCNC(=O)CCNC(=O)[CH](O)C(C)(C)CO[P](O)(O)=O"                                                                                                                                      
EHZ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CCCCCCCCCCC[C@@H](CC(=O)SCCNC(=O)CCNC(=O)[C@@H](C(C)(C)COP(=O)(O)O)O)O"                                                                                                                                    
EHZ SMILES           "OpenEye OEToolkits" 2.0.6 "CCCCCCCCCCCC(CC(=O)SCCNC(=O)CCNC(=O)C(C(C)(C)COP(=O)(O)O)O)O"                                                                                                                                              
# 
_pdbx_chem_comp_identifier.comp_id           EHZ 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.6 
_pdbx_chem_comp_identifier.identifier        "~{S}-[2-[3-[[(2~{R})-3,3-dimethyl-2-oxidanyl-4-phosphonooxy-butanoyl]amino]propanoylamino]ethyl] (3~{S})-3-oxidanyltetradecanethioate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
EHZ "Create component" 2018-03-23 EBI  
EHZ "Initial release"  2018-06-06 RCSB 
EHZ "Modify PCM"       2024-09-27 PDBE 
# 
loop_
_pdbx_chem_comp_pcm.pcm_id 
_pdbx_chem_comp_pcm.comp_id 
_pdbx_chem_comp_pcm.modified_residue_id 
_pdbx_chem_comp_pcm.type 
_pdbx_chem_comp_pcm.category 
_pdbx_chem_comp_pcm.position 
_pdbx_chem_comp_pcm.polypeptide_position 
_pdbx_chem_comp_pcm.comp_id_linking_atom 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession 
1 EHZ SER None Lipid/lipid-like "Amino-acid side chain" "Any position" O7 CB ? ? 
2 EHZ SER None Lipid/lipid-like "Amino-acid side chain" "Any position" P1 OG ? ? 
# 
