data_DKZ
#

_chem_comp.id                                   DKZ
_chem_comp.name                                 "4-amino-1-(3-deoxy-3-fluoro-beta-D-glucopyranosyl)pyrimidin-2(1H)-one"
_chem_comp.type                                 D-saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C10 H14 F N3 O5"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        
;4-amino-1-(3-deoxy-3-fluoro-beta-D-glucosyl)pyrimidin-2(1H)-one;
4-amino-1-(3-deoxy-3-fluoro-D-glucosyl)pyrimidin-2(1H)-one; 4-amino-1-(3-deoxy-3-fluoro-glucosyl)pyrimidin-2(1H)-one
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2010-01-12
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       275.234
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    DKZ
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3L7B
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  DKZ  "4-amino-1-(3-deoxy-3-fluoro-beta-D-glucosyl)pyrimidin-2(1H)-one"  PDB  ?  
2  DKZ  "4-amino-1-(3-deoxy-3-fluoro-D-glucosyl)pyrimidin-2(1H)-one"       PDB  ?  
3  DKZ  "4-amino-1-(3-deoxy-3-fluoro-glucosyl)pyrimidin-2(1H)-one"         PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
DKZ  C1    C1    C  0  1  N  N  R  33.524  23.075  27.944  -0.071   0.114   0.676  C1    DKZ   1  
DKZ  N1    N1    N  0  1  N  N  N  34.443  23.619  28.970   1.369  -0.002   0.429  N1    DKZ   2  
DKZ  C2    C2    C  0  1  N  N  S  33.920  23.254  26.466  -0.603   1.385   0.009  C2    DKZ   3  
DKZ  N2    N2    N  0  1  N  N  N  34.685  24.695  31.067   3.123  -0.283  -1.080  N2    DKZ   4  
DKZ  O2    O2    O  0  1  N  N  N  34.022  24.658  26.123   0.025   2.529   0.591  O2    DKZ   5  
DKZ  C3    C3    C  0  1  N  N  S  32.903  22.518  25.564  -2.118   1.467   0.221  C3    DKZ   6  
DKZ  F3    F3    F  0  1  N  N  N  33.366  22.466  24.270  -2.623   2.588  -0.447  F3    DKZ   7  
DKZ  N3    N3    N  0  1  N  N  N  36.769  25.102  31.963   5.355  -0.336  -0.371  N3    DKZ   8  
DKZ  C4    C4    C  0  1  N  N  R  32.627  21.076  26.055  -2.770   0.199  -0.339  C4    DKZ   9  
DKZ  O4    O4    O  0  1  N  N  N  31.453  20.598  25.407  -4.176   0.232  -0.082  O4    DKZ  10  
DKZ  C5    C5    C  0  1  N  N  R  32.437  20.964  27.587  -2.154  -1.026   0.342  C5    DKZ  11  
DKZ  O5    O5    O  0  1  N  N  N  33.508  21.649  28.284  -0.741  -1.025   0.132  O5    DKZ  12  
DKZ  C6    C6    C  0  1  N  N  N  32.440  19.497  28.060  -2.758  -2.299  -0.255  C6    DKZ  13  
DKZ  O6    O6    O  0  1  N  N  N  33.558  18.817  27.471  -2.271  -3.437   0.458  O6    DKZ  14  
DKZ  C7    C7    C  0  1  N  N  N  35.848  23.510  28.848   2.243   0.065   1.472  C7    DKZ  15  
DKZ  C8    C8    C  0  1  N  N  N  36.658  24.025  29.860   3.571  -0.043   1.230  C8    DKZ  16  
DKZ  C9    C9    C  0  1  N  N  N  36.032  24.614  30.969   4.012  -0.223  -0.097  C9    DKZ  17  
DKZ  C10   C10   C  0  1  N  N  N  33.878  24.203  30.105   1.820  -0.179  -0.826  C10   DKZ  18  
DKZ  O10   O10   O  0  1  N  N  N  32.645  24.280  30.202   1.023  -0.242  -1.747  O10   DKZ  19  
DKZ  H1    H1    H  0  1  N  N  N  32.567  23.615  27.982  -0.252   0.163   1.750  H1    DKZ  20  
DKZ  H2    H2    H  0  1  N  N  N  34.913  22.811  26.302  -0.386   1.354  -1.059  H2    DKZ  21  
DKZ  HO2   HO2   H  0  1  N  Y  N  34.267  24.744  25.209  -0.266   3.371   0.215  HO2   DKZ  22  
DKZ  H3    H3    H  0  1  N  N  N  31.962  23.086  25.610  -2.333   1.548   1.286  H3    DKZ  23  
DKZ  HN3   HN3   H  0  1  N  N  N  36.325  25.516  32.758   6.002  -0.292   0.350  HN3   DKZ  24  
DKZ  HN3A  HN3A  H  0  0  N  N  N  37.767  25.055  31.916   5.655  -0.460  -1.285  HN3A  DKZ  25  
DKZ  H4    H4    H  0  1  N  N  N  33.513  20.473  25.805  -2.597   0.145  -1.414  H4    DKZ  26  
DKZ  HO4   HO4   H  0  1  N  Y  N  31.269  19.712  25.697  -4.631   0.987  -0.481  HO4   DKZ  27  
DKZ  H5    H5    H  0  1  N  N  N  31.464  21.423  27.815  -2.363  -0.991   1.411  H5    DKZ  28  
DKZ  H61   H6    H  0  1  N  N  N  32.523  19.463  29.156  -3.844  -2.257  -0.175  H61   DKZ  29  
DKZ  H62   H6A   H  0  1  N  N  N  31.505  19.007  27.750  -2.474  -2.378  -1.304  H62   DKZ  30  
DKZ  HO6   HO6   H  0  1  N  Y  N  33.566  17.912  27.759  -2.613  -4.281   0.133  HO6   DKZ  31  
DKZ  H7    H7    H  0  1  N  N  N  36.287  23.035  27.983   1.881   0.204   2.480  H7    DKZ  32  
DKZ  H8    H8    H  0  1  N  N  N  37.735  23.972  29.792   4.282   0.007   2.042  H8    DKZ  33  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DKZ  C2   C1    SING  N  N   1  
DKZ  C1   O5    SING  N  N   2  
DKZ  C1   N1    SING  N  N   3  
DKZ  C1   H1    SING  N  N   4  
DKZ  C7   N1    SING  N  N   5  
DKZ  N1   C10   SING  N  N   6  
DKZ  C3   C2    SING  N  N   7  
DKZ  O2   C2    SING  N  N   8  
DKZ  C2   H2    SING  N  N   9  
DKZ  C10  N2    SING  N  N  10  
DKZ  C9   N2    DOUB  N  N  11  
DKZ  O2   HO2   SING  N  N  12  
DKZ  F3   C3    SING  N  N  13  
DKZ  C3   C4    SING  N  N  14  
DKZ  C3   H3    SING  N  N  15  
DKZ  C9   N3    SING  N  N  16  
DKZ  N3   HN3   SING  N  N  17  
DKZ  N3   HN3A  SING  N  N  18  
DKZ  O4   C4    SING  N  N  19  
DKZ  C4   C5    SING  N  N  20  
DKZ  C4   H4    SING  N  N  21  
DKZ  O4   HO4   SING  N  N  22  
DKZ  C5   C6    SING  N  N  23  
DKZ  C5   O5    SING  N  N  24  
DKZ  C5   H5    SING  N  N  25  
DKZ  O6   C6    SING  N  N  26  
DKZ  C6   H61   SING  N  N  27  
DKZ  C6   H62   SING  N  N  28  
DKZ  O6   HO6   SING  N  N  29  
DKZ  C7   C8    DOUB  N  N  30  
DKZ  C7   H7    SING  N  N  31  
DKZ  C8   C9    SING  N  N  32  
DKZ  C8   H8    SING  N  N  33  
DKZ  C10  O10   DOUB  N  N  34  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
DKZ  SMILES_CANONICAL  CACTVS                3.352  "NC1=NC(=O)N(C=C1)[C@@H]2O[C@H](CO)[C@@H](O)[C@H](F)[C@H]2O"  
DKZ  SMILES            CACTVS                3.352  "NC1=NC(=O)N(C=C1)[CH]2O[CH](CO)[CH](O)[CH](F)[CH]2O"  
DKZ  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.0  "C1=CN(C(=O)N=C1N)[C@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CO)O)F)O"  
DKZ  SMILES            "OpenEye OEToolkits"  1.7.0  "C1=CN(C(=O)N=C1N)C2C(C(C(C(O2)CO)O)F)O"  
DKZ  InChI             InChI                 1.03   "InChI=1S/C10H14FN3O5/c11-6-7(16)4(3-15)19-9(8(6)17)14-2-1-5(12)13-10(14)18/h1-2,4,6-9,15-17H,3H2,(H2,12,13,18)/t4-,6+,7-,8-,9-/m1/s1"  
DKZ  InChIKey          InChI                 1.03   AGFREDUIXIMAKC-PMPOVCSBSA-N  
#
_pdbx_chem_comp_identifier.comp_id          DKZ
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  1.6.1
_pdbx_chem_comp_identifier.identifier       "4-azanyl-1-[(2R,3S,4S,5R,6R)-4-fluoro-3,5-dihydroxy-6-(hydroxymethyl)oxan-2-yl]pyrimidin-2-one"
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
DKZ  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
DKZ  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
DKZ  "CARBOHYDRATE ANOMER"                  beta      PDB  ?  
DKZ  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
DKZ  "Create component"          2010-01-12  RCSB  
DKZ  "Modify descriptor"         2011-06-04  RCSB  
DKZ  "Other modification"        2020-07-03  RCSB  
DKZ  "Modify synonyms"           2020-07-17  RCSB  
DKZ  "Modify internal type"      2020-07-17  RCSB  
DKZ  "Modify linking type"       2020-07-17  RCSB  
DKZ  "Modify atom id"            2020-07-17  RCSB  
DKZ  "Modify component atom id"  2020-07-17  RCSB  
DKZ  "Modify leaving atom flag"  2020-07-17  RCSB  
##
