data_DCZ
# 
_chem_comp.id                                    DCZ 
_chem_comp.name                                  "2'-DEOXYCYTIDINE" 
_chem_comp.type                                  "DNA OH 5 prime terminus" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C9 H13 N3 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2001-05-30 
_chem_comp.pdbx_modified_date                    2017-07-13 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        227.217 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     DCZ 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1J90 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
DCZ N1     N1   N 0 1 N N N 61.282 17.906 9.670  -0.234 -0.603 1.003  N1     DCZ 1  
DCZ C2     C2   C 0 1 N N N 62.091 16.913 9.251  0.076  0.676  1.279  C2     DCZ 2  
DCZ N3     N3   N 0 1 N N N 62.616 16.046 10.117 0.313  1.072  2.528  N3     DCZ 3  
DCZ C4     C4   C 0 1 N N N 62.361 16.147 11.420 0.248  0.212  3.535  C4     DCZ 4  
DCZ C5     C5   C 0 1 N N N 61.535 17.158 11.880 -0.068 -1.137 3.279  C5     DCZ 5  
DCZ C6     C6   C 0 1 N N N 60.994 18.047 10.964 -0.312 -1.523 2.005  C6     DCZ 6  
DCZ O2     O2   O 0 1 N N N 62.369 16.787 7.960  0.142  1.487  0.370  O2     DCZ 7  
DCZ N4     N4   N 0 1 N N N 62.918 15.232 12.316 0.495  0.632  4.822  N4     DCZ 8  
DCZ "C1'"  C1*  C 0 1 N N R 60.738 18.841 8.689  -0.489 -1.009 -0.381 "C1'"  DCZ 9  
DCZ "C2'"  C2*  C 0 1 N N N 59.292 18.529 8.349  -1.673 -0.205 -0.952 "C2'"  DCZ 10 
DCZ "C3'"  C3*  C 0 1 N N S 58.782 19.899 7.967  -1.082 0.514  -2.188 "C3'"  DCZ 11 
DCZ "C4'"  C4*  C 0 1 N N R 59.557 20.858 8.862  0.165  -0.350 -2.502 "C4'"  DCZ 12 
DCZ "O4'"  O4*  O 0 1 N N N 60.774 20.186 9.192  0.659  -0.720 -1.195 "O4'"  DCZ 13 
DCZ "O3'"  O3*  O 0 1 N N N 59.153 20.114 6.618  -2.004 0.494  -3.280 "O3'"  DCZ 14 
DCZ "C5'"  C5*  C 0 1 N N N 58.772 21.107 10.125 1.209  0.466  -3.266 "C5'"  DCZ 15 
DCZ "O5'"  O5*  O 0 1 N N N 57.622 21.779 10.066 2.346  -0.352 -3.542 "O5'"  DCZ 16 
DCZ H5     H5   H 0 1 N N N 61.312 17.253 12.956 -0.125 -1.850 4.089  H5     DCZ 17 
DCZ H6     H6   H 0 1 N N N 60.329 18.873 11.267 -0.562 -2.551 1.784  H6     DCZ 18 
DCZ HN41   1HN4 H 0 0 N N N 62.722 15.309 13.314 0.718  1.560  4.994  HN41   DCZ 19 
DCZ HN42   2HN4 H 0 0 N N N 63.929 15.228 12.185 0.444  0.001  5.556  HN42   DCZ 20 
DCZ "H1'"  H1*  H 0 1 N N N 61.372 18.737 7.777  -0.712 -2.075 -0.419 "H1'"  DCZ 21 
DCZ "H2'1" 1H2* H 0 0 N N N 59.141 17.731 7.584  -2.480 -0.875 -1.250 "H2'1" DCZ 22 
DCZ "H2'2" 2H2* H 0 0 N N N 58.713 18.008 9.147  -2.030 0.520  -0.222 "H2'2" DCZ 23 
DCZ "H3'"  H3*  H 0 1 N N N 57.679 20.023 8.079  -0.795 1.536  -1.943 "H3'"  DCZ 24 
DCZ "H4'"  H4*  H 0 1 N N N 59.742 21.835 8.358  -0.115 -1.238 -3.069 "H4'"  DCZ 25 
DCZ "HO3'" *HO3 H 0 0 N N N 58.832 20.975 6.377  -2.793 0.970  -2.987 "HO3'" DCZ 26 
DCZ "H5'1" 1H5* H 0 0 N N N 58.585 20.128 10.625 0.779  0.819  -4.203 "H5'1" DCZ 27 
DCZ "H5'2" 2H5* H 0 0 N N N 59.438 21.609 10.863 1.514  1.321  -2.662 "H5'2" DCZ 28 
DCZ HO51   1HO5 H 0 0 N N N 57.127 21.935 10.861 2.978  0.199  -4.022 HO51   DCZ 29 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
DCZ N1    C2     SING N N 1  
DCZ N1    C6     SING N N 2  
DCZ N1    "C1'"  SING N N 3  
DCZ C2    N3     SING N N 4  
DCZ C2    O2     DOUB N N 5  
DCZ N3    C4     DOUB N N 6  
DCZ C4    C5     SING N N 7  
DCZ C4    N4     SING N N 8  
DCZ C5    C6     DOUB N N 9  
DCZ C5    H5     SING N N 10 
DCZ C6    H6     SING N N 11 
DCZ N4    HN41   SING N N 12 
DCZ N4    HN42   SING N N 13 
DCZ "C1'" "C2'"  SING N N 14 
DCZ "C1'" "O4'"  SING N N 15 
DCZ "C1'" "H1'"  SING N N 16 
DCZ "C2'" "C3'"  SING N N 17 
DCZ "C2'" "H2'1" SING N N 18 
DCZ "C2'" "H2'2" SING N N 19 
DCZ "C3'" "C4'"  SING N N 20 
DCZ "C3'" "O3'"  SING N N 21 
DCZ "C3'" "H3'"  SING N N 22 
DCZ "C4'" "O4'"  SING N N 23 
DCZ "C4'" "C5'"  SING N N 24 
DCZ "C4'" "H4'"  SING N N 25 
DCZ "O3'" "HO3'" SING N N 26 
DCZ "C5'" "O5'"  SING N N 27 
DCZ "C5'" "H5'1" SING N N 28 
DCZ "C5'" "H5'2" SING N N 29 
DCZ "O5'" HO51   SING N N 30 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
DCZ SMILES           ACDLabs              10.04 "O=C1N=C(N)C=CN1C2OC(C(O)C2)CO"                                                                                        
DCZ SMILES_CANONICAL CACTVS               3.341 "NC1=NC(=O)N(C=C1)[C@H]2C[C@H](O)[C@@H](CO)O2"                                                                         
DCZ SMILES           CACTVS               3.341 "NC1=NC(=O)N(C=C1)[CH]2C[CH](O)[CH](CO)O2"                                                                             
DCZ SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1[C@@H]([C@H](O[C@H]1N2C=CC(=NC2=O)N)CO)O"                                                                           
DCZ SMILES           "OpenEye OEToolkits" 1.5.0 "C1C(C(OC1N2C=CC(=NC2=O)N)CO)O"                                                                                        
DCZ InChI            InChI                1.03  "InChI=1S/C9H13N3O4/c10-7-1-2-12(9(15)11-7)8-3-5(14)6(4-13)16-8/h1-2,5-6,8,13-14H,3-4H2,(H2,10,11,15)/t5-,6+,8+/m0/s1" 
DCZ InChIKey         InChI                1.03  CKTSBUTUHBMZGZ-SHYZEUOFSA-N                                                                                            
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
DCZ "SYSTEMATIC NAME" ACDLabs              10.04 "2'-deoxycytidine"                                                             
DCZ "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "4-amino-1-[(2R,4S,5R)-4-hydroxy-5-(hydroxymethyl)oxolan-2-yl]pyrimidin-2-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
DCZ "Create component"    2001-05-30 RCSB 
DCZ "Modify descriptor"   2011-06-04 RCSB 
DCZ "Modify linking type" 2017-07-13 RCSB 
# 
