data_CVZ
# 
_chem_comp.id                                    CVZ 
_chem_comp.name                                  "3-[(~{E})-5-[ethyl-[(2-nitrophenyl)methyl]amino]pent-1-enyl]-1-[5-[ethyl-[(2-nitrophenyl)methyl]amino]pentyl]-6-methyl-pyrimidine-2,4-dione" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C33 H44 N6 O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-12-09 
_chem_comp.pdbx_modified_date                    2018-12-07 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        620.739 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     CVZ 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6F25 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
CVZ C01 C1  C 0  1 N N N 196.765 98.936  10.132 8.087   -1.164 -2.098 C01 CVZ 1  
CVZ C02 C2  C 0  1 N N N 197.776 97.844  9.817  7.200   0.036  -1.759 C02 CVZ 2  
CVZ C04 C3  C 0  1 N N N 198.126 97.852  7.316  6.442   -1.020 0.284  C04 CVZ 3  
CVZ C05 C4  C 0  1 N N N 197.216 98.783  6.464  4.989   -1.095 -0.188 C05 CVZ 4  
CVZ C06 C5  C 0  1 N N N 197.308 98.565  4.935  4.318   -2.328 0.420  C06 CVZ 5  
CVZ C07 C6  C 0  1 N N N 198.617 99.077  4.281  2.865   -2.402 -0.053 C07 CVZ 6  
CVZ C08 C7  C 0  1 N N N 199.301 98.222  3.158  2.193   -3.635 0.555  C08 CVZ 7  
CVZ C10 C8  C 0  1 N N N 199.569 99.453  0.985  0.496   -4.387 -1.045 C10 CVZ 8  
CVZ C11 C9  C 0  1 N N N 198.119 99.118  0.703  1.586   -5.059 -1.839 C11 CVZ 9  
CVZ C12 C10 C 0  1 N N N 200.338 100.164 0.119  -0.787  -4.457 -1.459 C12 CVZ 10 
CVZ C13 C11 C 0  1 N N N 201.752 100.517 0.340  -1.794  -3.823 -0.693 C13 CVZ 11 
CVZ C16 C12 C 0  1 N N N 203.868 100.422 1.849  -2.436  -2.534 1.195  C16 CVZ 12 
CVZ C17 C13 C 0  1 N N N 204.198 101.930 2.194  -3.672  -2.458 0.743  C17 CVZ 13 
CVZ C18 C14 C 0  1 N N N 205.699 102.383 2.285  -4.777  -1.979 1.648  C18 CVZ 14 
CVZ C19 C15 C 0  1 N N N 206.584 102.125 0.998  -5.501  -0.802 0.991  C19 CVZ 15 
CVZ C20 C16 C 0  1 N N N 206.957 103.375 0.132  -6.623  -0.315 1.910  C20 CVZ 16 
CVZ C22 C17 C 0  1 N N N 208.619 105.265 -0.161 -8.036  1.606  2.331  C22 CVZ 17 
CVZ C23 C18 C 0  1 N N N 207.345 106.085 0.134  -7.086  2.321  3.293  C23 CVZ 18 
CVZ C24 C19 C 0  1 N N N 209.261 103.009 -0.908 -8.089  0.514  0.170  C24 CVZ 19 
CVZ C25 C20 C 0  1 Y N N 210.647 102.474 -0.462 -8.520  1.765  -0.550 C25 CVZ 20 
CVZ C26 C21 C 0  1 Y N N 210.844 101.411 0.449  -7.650  2.396  -1.420 C26 CVZ 21 
CVZ C27 C22 C 0  1 Y N N 212.111 100.945 0.834  -8.045  3.544  -2.080 C27 CVZ 22 
CVZ C28 C23 C 0  1 Y N N 213.255 101.530 0.311  -9.309  4.062  -1.871 C28 CVZ 23 
CVZ C29 C24 C 0  1 Y N N 213.110 102.578 -0.593 -10.179 3.431  -1.000 C29 CVZ 24 
CVZ C30 C25 C 0  1 Y N N 211.838 103.028 -0.962 -9.786  2.280  -0.344 C30 CVZ 25 
CVZ C34 C26 C 0  1 N N N 201.550 99.332  2.459  -0.164  -3.104 0.819  C34 CVZ 26 
CVZ C36 C27 C 0  1 N N N 197.695 95.707  8.523  8.401   0.403  0.312  C36 CVZ 27 
CVZ C37 C28 C 0  1 Y N N 196.459 94.811  8.484  8.872   1.792  -0.036 C37 CVZ 28 
CVZ C38 C29 C 0  1 Y N N 195.756 94.358  7.333  8.314   2.888  0.594  C38 CVZ 29 
CVZ C39 C30 C 0  1 Y N N 194.622 93.532  7.434  8.745   4.162  0.276  C39 CVZ 30 
CVZ C40 C31 C 0  1 Y N N 194.157 93.126  8.677  9.735   4.340  -0.673 C40 CVZ 31 
CVZ C41 C32 C 0  1 Y N N 194.825 93.550  9.818  10.294  3.243  -1.302 C41 CVZ 32 
CVZ C42 C33 C 0  1 Y N N 195.939 94.366  9.706  9.865   1.969  -0.980 C42 CVZ 33 
CVZ N03 N1  N 0  1 N N N 197.480 97.194  8.493  7.087   0.164  -0.300 N03 CVZ 34 
CVZ N09 N2  N 0  1 N N N 200.148 98.998  2.181  0.802   -3.707 0.103  N09 CVZ 35 
CVZ N15 N3  N 0  1 N N N 202.373 100.085 1.551  -1.452  -3.162 0.432  N15 CVZ 36 
CVZ N21 N4  N 0  1 N N N 208.451 103.775 0.116  -7.255  0.875  1.324  N21 CVZ 37 
CVZ N31 N5  N 1  1 N N N 209.687 100.717 1.069  -6.296  1.842  -1.644 N31 CVZ 38 
CVZ N43 N6  N 1  1 N N N 196.138 94.718  5.918  7.253   2.698  1.610  N43 CVZ 39 
CVZ O14 O1  O 0  1 N N N 202.409 101.162 -0.467 -2.958  -3.872 -1.046 O14 CVZ 40 
CVZ O32 O2  O -1 1 N N N 209.429 100.885 2.248  -5.530  2.397  -2.411 O32 CVZ 41 
CVZ O33 O3  O 0  1 N N N 209.003 99.976  0.388  -5.948  0.830  -1.062 O33 CVZ 42 
CVZ O35 O4  O 0  1 N N N 202.028 98.934  3.513  0.129   -2.505 1.836  O35 CVZ 43 
CVZ O44 O5  O 0  1 N N N 195.297 94.573  5.056  6.761   3.664  2.165  O44 CVZ 44 
CVZ O45 O6  O -1 1 N N N 197.247 95.130  5.649  6.873   1.576  1.890  O45 CVZ 45 
CVZ H1  H1  H 0  1 N N N 197.007 99.391  11.104 9.064   -1.038 -1.631 H1  CVZ 46 
CVZ H2  H2  H 0  1 N N N 196.801 99.706  9.347  7.622   -2.077 -1.726 H2  CVZ 47 
CVZ H3  H3  H 0  1 N N N 195.756 98.500  10.173 8.208   -1.232 -3.179 H3  CVZ 48 
CVZ H4  H4  H 0  1 N N N 197.738 97.081  10.608 7.643   0.943  -2.170 H4  CVZ 49 
CVZ H5  H5  H 0  1 N N N 198.783 98.286  9.783  6.209   -0.112 -2.188 H5  CVZ 50 
CVZ H6  H6  H 0  1 N N N 198.507 97.059  6.656  6.468   -0.948 1.372  H6  CVZ 51 
CVZ H7  H7  H 0  1 N N N 198.967 98.455  7.688  6.974   -1.917 -0.033 H7  CVZ 52 
CVZ H8  H8  H 0  1 N N N 197.498 99.825  6.678  4.457   -0.198 0.129  H8  CVZ 53 
CVZ H9  H9  H 0  1 N N N 196.173 98.615  6.771  4.964   -1.166 -1.276 H9  CVZ 54 
CVZ H10 H10 H 0  1 N N N 196.463 99.088  4.464  4.850   -3.225 0.102  H10 CVZ 55 
CVZ H11 H11 H 0  1 N N N 197.227 97.486  4.738  4.343   -2.256 1.507  H11 CVZ 56 
CVZ H12 H12 H 0  1 N N N 199.354 99.194  5.089  2.333   -1.505 0.264  H12 CVZ 57 
CVZ H13 H13 H 0  1 N N N 198.393 100.061 3.843  2.839   -2.474 -1.140 H13 CVZ 58 
CVZ H14 H14 H 0  1 N N N 198.509 97.712  2.590  2.725   -4.532 0.238  H14 CVZ 59 
CVZ H15 H15 H 0  1 N N N 199.944 97.474  3.645  2.218   -3.564 1.643  H15 CVZ 60 
CVZ H16 H16 H 0  1 N N N 197.706 98.540  1.542  1.715   -6.082 -1.485 H16 CVZ 61 
CVZ H17 H17 H 0  1 N N N 197.545 100.048 0.581  1.311   -5.072 -2.894 H17 CVZ 62 
CVZ H18 H18 H 0  1 N N N 198.053 98.523  -0.220 2.519   -4.510 -1.713 H18 CVZ 63 
CVZ H19 H19 H 0  1 N N N 199.878 100.495 -0.800 -1.042  -4.990 -2.363 H19 CVZ 64 
CVZ H20 H20 H 0  1 N N N 204.637 99.664  1.821  -2.185  -2.110 2.156  H20 CVZ 65 
CVZ H21 H21 H 0  1 N N N 203.401 102.639 2.365  -3.893  -2.740 -0.276 H21 CVZ 66 
CVZ H22 H22 H 0  1 N N N 206.162 101.844 3.125  -5.485  -2.790 1.820  H22 CVZ 67 
CVZ H23 H23 H 0  1 N N N 205.712 103.464 2.491  -4.354  -1.659 2.601  H23 CVZ 68 
CVZ H24 H24 H 0  1 N N N 206.034 101.425 0.352  -4.794  0.010  0.820  H24 CVZ 69 
CVZ H25 H25 H 0  1 N N N 207.523 101.658 1.329  -5.924  -1.122 0.039  H25 CVZ 70 
CVZ H26 H26 H 0  1 N N N 206.384 104.232 0.516  -7.368  -1.103 2.023  H26 CVZ 71 
CVZ H27 H27 H 0  1 N N N 206.654 103.167 -0.905 -6.209  -0.063 2.886  H27 CVZ 72 
CVZ H28 H28 H 0  1 N N N 209.435 105.648 0.469  -8.658  0.905  2.888  H28 CVZ 73 
CVZ H29 H29 H 0  1 N N N 208.882 105.396 -1.221 -8.671  2.340  1.835  H29 CVZ 74 
CVZ H30 H30 H 0  1 N N N 207.532 107.146 -0.086 -6.411  1.593  3.745  H30 CVZ 75 
CVZ H31 H31 H 0  1 N N N 206.520 105.720 -0.496 -6.505  3.064  2.746  H31 CVZ 76 
CVZ H32 H32 H 0  1 N N N 207.074 105.972 1.194  -7.663  2.815  4.075  H32 CVZ 77 
CVZ H33 H33 H 0  1 N N N 209.425 103.677 -1.766 -8.970  -0.029 0.515  H33 CVZ 78 
CVZ H34 H34 H 0  1 N N N 208.660 102.145 -1.226 -7.516  -0.118 -0.509 H34 CVZ 79 
CVZ H35 H35 H 0  1 N N N 212.195 100.130 1.538  -7.366  4.037  -2.760 H35 CVZ 80 
CVZ H36 H36 H 0  1 N N N 214.235 101.180 0.599  -9.618  4.959  -2.386 H36 CVZ 81 
CVZ H37 H37 H 0  1 N N N 213.987 103.048 -1.013 -11.167 3.836  -0.836 H37 CVZ 82 
CVZ H38 H38 H 0  1 N N N 211.767 103.843 -1.667 -10.466 1.787  0.336  H38 CVZ 83 
CVZ H39 H39 H 0  1 N N N 198.242 95.473  9.448  9.116   -0.328 -0.067 H39 CVZ 84 
CVZ H40 H40 H 0  1 N N N 198.317 95.447  7.654  8.322   0.306  1.394  H40 CVZ 85 
CVZ H41 H41 H 0  1 N N N 194.110 93.212  6.539  8.308   5.019  0.768  H41 CVZ 86 
CVZ H42 H42 H 0  1 N N N 193.288 92.489  8.756  10.072  5.335  -0.922 H42 CVZ 87 
CVZ H43 H43 H 0  1 N N N 194.476 93.244  10.793 11.067  3.382  -2.043 H43 CVZ 88 
CVZ H44 H44 H 0  1 N N N 196.435 94.677  10.613 10.305  1.112  -1.469 H44 CVZ 89 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
CVZ C30 C29 DOUB Y N 1  
CVZ C30 C25 SING Y N 2  
CVZ C24 C25 SING N N 3  
CVZ C24 N21 SING N N 4  
CVZ C29 C28 SING Y N 5  
CVZ O14 C13 DOUB N N 6  
CVZ C25 C26 DOUB Y N 7  
CVZ C22 N21 SING N N 8  
CVZ C22 C23 SING N N 9  
CVZ N21 C20 SING N N 10 
CVZ C12 C13 SING N N 11 
CVZ C12 C10 DOUB N N 12 
CVZ C20 C19 SING N N 13 
CVZ C28 C27 DOUB Y N 14 
CVZ C13 N15 SING N N 15 
CVZ O33 N31 DOUB N N 16 
CVZ C26 C27 SING Y N 17 
CVZ C26 N31 SING N N 18 
CVZ C11 C10 SING N N 19 
CVZ C10 N09 SING N N 20 
CVZ C19 C18 SING N N 21 
CVZ N31 O32 SING N N 22 
CVZ N15 C16 SING N N 23 
CVZ N15 C34 SING N N 24 
CVZ C16 C17 DOUB N E 25 
CVZ N09 C34 SING N N 26 
CVZ N09 C08 SING N N 27 
CVZ C17 C18 SING N N 28 
CVZ C34 O35 DOUB N N 29 
CVZ C08 C07 SING N N 30 
CVZ C07 C06 SING N N 31 
CVZ C06 C05 SING N N 32 
CVZ O44 N43 DOUB N N 33 
CVZ O45 N43 SING N N 34 
CVZ N43 C38 SING N N 35 
CVZ C05 C04 SING N N 36 
CVZ C04 N03 SING N N 37 
CVZ C38 C39 DOUB Y N 38 
CVZ C38 C37 SING Y N 39 
CVZ C39 C40 SING Y N 40 
CVZ C37 C36 SING N N 41 
CVZ C37 C42 DOUB Y N 42 
CVZ N03 C36 SING N N 43 
CVZ N03 C02 SING N N 44 
CVZ C40 C41 DOUB Y N 45 
CVZ C42 C41 SING Y N 46 
CVZ C02 C01 SING N N 47 
CVZ C01 H1  SING N N 48 
CVZ C01 H2  SING N N 49 
CVZ C01 H3  SING N N 50 
CVZ C02 H4  SING N N 51 
CVZ C02 H5  SING N N 52 
CVZ C04 H6  SING N N 53 
CVZ C04 H7  SING N N 54 
CVZ C05 H8  SING N N 55 
CVZ C05 H9  SING N N 56 
CVZ C06 H10 SING N N 57 
CVZ C06 H11 SING N N 58 
CVZ C07 H12 SING N N 59 
CVZ C07 H13 SING N N 60 
CVZ C08 H14 SING N N 61 
CVZ C08 H15 SING N N 62 
CVZ C11 H16 SING N N 63 
CVZ C11 H17 SING N N 64 
CVZ C11 H18 SING N N 65 
CVZ C12 H19 SING N N 66 
CVZ C16 H20 SING N N 67 
CVZ C17 H21 SING N N 68 
CVZ C18 H22 SING N N 69 
CVZ C18 H23 SING N N 70 
CVZ C19 H24 SING N N 71 
CVZ C19 H25 SING N N 72 
CVZ C20 H26 SING N N 73 
CVZ C20 H27 SING N N 74 
CVZ C22 H28 SING N N 75 
CVZ C22 H29 SING N N 76 
CVZ C23 H30 SING N N 77 
CVZ C23 H31 SING N N 78 
CVZ C23 H32 SING N N 79 
CVZ C24 H33 SING N N 80 
CVZ C24 H34 SING N N 81 
CVZ C27 H35 SING N N 82 
CVZ C28 H36 SING N N 83 
CVZ C29 H37 SING N N 84 
CVZ C30 H38 SING N N 85 
CVZ C36 H39 SING N N 86 
CVZ C36 H40 SING N N 87 
CVZ C39 H41 SING N N 88 
CVZ C40 H42 SING N N 89 
CVZ C41 H43 SING N N 90 
CVZ C42 H44 SING N N 91 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
CVZ InChI            InChI                1.03  
"InChI=1S/C33H44N6O6/c1-4-34(25-28-16-8-10-18-30(28)38(42)43)20-12-6-14-22-36-27(3)24-32(40)37(33(36)41)23-15-7-13-21-35(5-2)26-29-17-9-11-19-31(29)39(44)45/h8-11,15-19,23-24H,4-7,12-14,20-22,25-26H2,1-3H3/b23-15+" 
CVZ InChIKey         InChI                1.03  WVBROKGEXVFXBW-HZHRSRAPSA-N 
CVZ SMILES_CANONICAL CACTVS               3.385 "CCN(CCCCCN1C(=CC(=O)N(\C=C\CCCN(CC)Cc2ccccc2[N+]([O-])=O)C1=O)C)Cc3ccccc3[N+]([O-])=O" 
CVZ SMILES           CACTVS               3.385 "CCN(CCCCCN1C(=CC(=O)N(C=CCCCN(CC)Cc2ccccc2[N+]([O-])=O)C1=O)C)Cc3ccccc3[N+]([O-])=O" 
CVZ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CCN(CCCCCN1C(=CC(=O)N(C1=O)/C=C/CCCN(CC)Cc2ccccc2[N+](=O)[O-])C)Cc3ccccc3[N+](=O)[O-]" 
CVZ SMILES           "OpenEye OEToolkits" 2.0.6 "CCN(CCCCCN1C(=CC(=O)N(C1=O)C=CCCCN(CC)Cc2ccccc2[N+](=O)[O-])C)Cc3ccccc3[N+](=O)[O-]" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
CVZ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "3-[(~{E})-5-[ethyl-[(2-nitrophenyl)methyl]amino]pent-1-enyl]-1-[5-[ethyl-[(2-nitrophenyl)methyl]amino]pentyl]-6-methyl-pyrimidine-2,4-dione" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
CVZ "Create component" 2017-12-09 EBI  
CVZ "Initial release"  2018-12-12 RCSB 
# 
