data_A3Z
# 
_chem_comp.id                                    A3Z 
_chem_comp.name                                  "~{S}-[2-[3-[[(2~{R})-3,3-dimethyl-2-oxidanyl-4-phosphonooxy-butanoyl]amino]propanoylamino]ethyl] (~{E})-but-2-enethioate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C15 H27 N2 O8 P S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-07-17 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        426.422 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A3Z 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8PS2 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A3Z C1  C1  C 0 1 N N N N N N 144.075 107.291 101.007 -7.878  -0.478 0.327  C1  A3Z 1  
A3Z C2  C2  C 0 1 N N N N N N 144.386 108.210 102.175 -9.261  -0.813 -0.046 C2  A3Z 2  
A3Z C3  C3  C 0 1 N N N N N N 145.564 108.210 102.726 -10.164 -1.058 0.900  C3  A3Z 3  
A3Z C4  C4  C 0 1 N N N N N N 145.820 109.167 103.876 -11.580 -1.402 0.518  C4  A3Z 4  
A3Z O5  O1  O 0 1 N N N N N N 144.926 106.780 100.350 -7.560  -0.425 1.500  O5  A3Z 5  
A3Z C28 C5  C 0 1 N N N N N N 137.338 101.261 101.008 4.876   0.043  0.038  C28 A3Z 6  
A3Z C29 C6  C 0 1 N N N N N N 138.801 100.986 101.413 4.715   1.083  1.148  C29 A3Z 7  
A3Z C30 C7  C 0 1 N N N N N N 139.482 102.280 101.905 3.630   0.623  2.125  C30 A3Z 8  
A3Z C31 C8  C 0 1 N N N N N N 138.841 99.992  102.584 6.040   1.241  1.896  C31 A3Z 9  
A3Z C32 C9  C 0 1 N N R N N N 139.603 100.376 100.225 4.312   2.426  0.535  C32 A3Z 10 
A3Z C34 C10 C 0 1 N N N N N N 139.508 101.112 98.884  3.083   2.240  -0.317 C34 A3Z 11 
A3Z C37 C11 C 0 1 N N N N N N 140.657 101.431 96.640  0.729   1.663  -0.574 C37 A3Z 12 
A3Z C38 C12 C 0 1 N N N N N N 141.648 102.567 96.486  -0.471  1.352  0.322  C38 A3Z 13 
A3Z C39 C13 C 0 1 N N N N N N 141.372 103.909 97.118  -1.677  1.068  -0.535 C39 A3Z 14 
A3Z C42 C14 C 0 1 N N N N N N 142.465 105.947 98.116  -4.031  0.491  -0.792 C42 A3Z 15 
A3Z C43 C15 C 0 1 N N N N N N 141.961 105.688 99.527  -5.231  0.179  0.104  C43 A3Z 16 
A3Z N36 N1  N 0 1 N N N N N N 140.600 100.864 97.971  1.902   1.939  0.259  N36 A3Z 17 
A3Z N41 N2  N 0 1 N N N N N N 142.559 104.659 97.478  -2.858  0.767  0.041  N41 A3Z 18 
A3Z O23 O2  O 0 1 N N N N N N 134.938 100.224 103.887 6.785   -2.308 -1.221 O23 A3Z 19 
A3Z O25 O3  O 0 1 N N N N N N 135.312 99.132  101.623 4.316   -2.814 -1.099 O25 A3Z 20 
A3Z O26 O4  O 0 1 N N N N N N 134.059 101.272 101.642 5.784   -3.784 0.711  O26 A3Z 21 
A3Z O27 O5  O 0 1 N N N N N N 136.562 101.354 102.161 5.252   -1.211 0.611  O27 A3Z 22 
A3Z O33 O6  O 0 1 N N N N N N 139.216 99.049  99.924  5.382   2.920  -0.274 O33 A3Z 23 
A3Z O35 O7  O 0 1 N N N N N N 138.606 101.831 98.594  3.156   2.362  -1.522 O35 A3Z 24 
A3Z O40 O8  O 0 1 N N N N N N 140.262 104.298 97.266  -1.586  1.111  -1.744 O40 A3Z 25 
A3Z P24 P1  P 0 1 N N N N N N 135.181 100.487 102.281 5.508   -2.535 -0.268 P24 A3Z 26 
A3Z S44 S1  S 0 1 N N N N N N 142.312 107.038 100.678 -6.680  -0.161 -0.926 S44 A3Z 27 
A3Z H1  H1  H 0 1 N N N N N N 143.620 108.871 102.553 -9.543  -0.861 -1.087 H1  A3Z 28 
A3Z H2  H2  H 0 1 N N N N N N 146.340 107.546 102.374 -9.881  -1.011 1.941  H2  A3Z 29 
A3Z H3  H3  H 0 1 N N N N N N 146.854 109.047 104.230 -12.170 -1.567 1.420  H3  A3Z 30 
A3Z H4  H4  H 0 1 N N N N N N 145.668 110.201 103.533 -12.013 -0.579 -0.052 H4  A3Z 31 
A3Z H5  H5  H 0 1 N N N N N N 145.123 108.947 104.698 -11.584 -2.306 -0.090 H5  A3Z 32 
A3Z H6  H6  H 0 1 N N N N N N 137.281 102.206 100.447 3.931   -0.070 -0.494 H6  A3Z 33 
A3Z H7  H7  H 0 1 N N N N N N 136.968 100.438 100.379 5.648   0.371  -0.658 H7  A3Z 34 
A3Z H8  H8  H 0 1 N N N N N N 138.908 102.701 102.743 3.967   -0.273 2.646  H8  A3Z 35 
A3Z H9  H9  H 0 1 N N N N N N 140.505 102.052 102.240 3.435   1.413  2.850  H9  A3Z 36 
A3Z H10 H10 H 0 1 N N N N N N 139.520 103.010 101.083 2.716   0.401  1.574  H10 A3Z 37 
A3Z H11 H11 H 0 1 N N N N N N 138.279 100.404 103.435 6.798   1.627  1.214  H11 A3Z 38 
A3Z H12 H12 H 0 1 N N N N N N 138.387 99.040  102.272 5.909   1.937  2.724  H12 A3Z 39 
A3Z H13 H13 H 0 1 N N N N N N 139.885 99.820  102.883 6.358   0.272  2.281  H13 A3Z 40 
A3Z H14 H14 H 0 1 N N N N N N 140.662 100.375 100.521 4.098   3.139  1.330  H14 A3Z 41 
A3Z H15 H15 H 0 1 N N N N N N 139.657 101.810 96.384  0.934   0.808  -1.218 H15 A3Z 42 
A3Z H16 H16 H 0 1 N N N N N N 140.937 100.632 95.937  0.507   2.536  -1.189 H16 A3Z 43 
A3Z H17 H17 H 0 1 N N N N N N 142.603 102.212 96.902  -0.249  0.479  0.936  H17 A3Z 44 
A3Z H18 H18 H 0 1 N N N N N N 141.761 102.743 95.406  -0.675  2.207  0.966  H18 A3Z 45 
A3Z H19 H19 H 0 1 N N N N N N 143.453 106.430 98.147  -3.826  -0.364 -1.436 H19 A3Z 46 
A3Z H20 H20 H 0 1 N N N N N N 141.759 106.591 97.572  -4.253  1.363  -1.407 H20 A3Z 47 
A3Z H21 H21 H 0 1 N N N N N N 140.872 105.540 99.486  -5.009  -0.693 0.718  H21 A3Z 48 
A3Z H22 H22 H 0 1 N N N N N N 142.441 104.774 99.906  -5.436  1.035  0.748  H22 A3Z 49 
A3Z H23 H23 H 0 1 N N N N N N 141.350 100.275 98.272  1.829   1.904  1.226  H23 A3Z 50 
A3Z H24 H24 H 0 1 N N N N N N 143.461 104.275 97.280  -2.931  0.732  1.008  H24 A3Z 51 
A3Z H25 H25 H 0 1 N N N N N N 134.932 99.290  104.058 7.605   -2.120 -0.743 H25 A3Z 52 
A3Z H26 H26 H 0 1 N N N N N N 133.661 100.753 100.953 5.947   -4.617 0.248  H26 A3Z 53 
A3Z H27 H27 H 0 1 N N N N N N 139.249 98.522  100.714 5.626   2.335  -1.003 H27 A3Z 54 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A3Z C38 C37 SING N N 1  
A3Z C38 C39 SING N N 2  
A3Z C37 N36 SING N N 3  
A3Z C39 O40 DOUB N N 4  
A3Z C39 N41 SING N N 5  
A3Z N41 C42 SING N N 6  
A3Z N36 C34 SING N N 7  
A3Z C42 C43 SING N N 8  
A3Z O35 C34 DOUB N N 9  
A3Z C34 C32 SING N N 10 
A3Z C43 S44 SING N N 11 
A3Z O33 C32 SING N N 12 
A3Z C32 C29 SING N N 13 
A3Z O5  C1  DOUB N N 14 
A3Z S44 C1  SING N N 15 
A3Z C1  C2  SING N N 16 
A3Z C28 C29 SING N N 17 
A3Z C28 O27 SING N N 18 
A3Z C29 C30 SING N N 19 
A3Z C29 C31 SING N N 20 
A3Z O25 P24 DOUB N N 21 
A3Z O26 P24 SING N N 22 
A3Z O27 P24 SING N N 23 
A3Z C2  C3  DOUB N E 24 
A3Z P24 O23 SING N N 25 
A3Z C3  C4  SING N N 26 
A3Z C2  H1  SING N N 27 
A3Z C3  H2  SING N N 28 
A3Z C4  H3  SING N N 29 
A3Z C4  H4  SING N N 30 
A3Z C4  H5  SING N N 31 
A3Z C28 H6  SING N N 32 
A3Z C28 H7  SING N N 33 
A3Z C30 H8  SING N N 34 
A3Z C30 H9  SING N N 35 
A3Z C30 H10 SING N N 36 
A3Z C31 H11 SING N N 37 
A3Z C31 H12 SING N N 38 
A3Z C31 H13 SING N N 39 
A3Z C32 H14 SING N N 40 
A3Z C37 H15 SING N N 41 
A3Z C37 H16 SING N N 42 
A3Z C38 H17 SING N N 43 
A3Z C38 H18 SING N N 44 
A3Z C42 H19 SING N N 45 
A3Z C42 H20 SING N N 46 
A3Z C43 H21 SING N N 47 
A3Z C43 H22 SING N N 48 
A3Z N36 H23 SING N N 49 
A3Z N41 H24 SING N N 50 
A3Z O23 H25 SING N N 51 
A3Z O26 H26 SING N N 52 
A3Z O33 H27 SING N N 53 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A3Z InChI            InChI                1.06  "InChI=1S/C15H27N2O8PS/c1-4-5-12(19)27-9-8-16-11(18)6-7-17-14(21)13(20)15(2,3)10-25-26(22,23)24/h4-5,13,20H,6-10H2,1-3H3,(H,16,18)(H,17,21)(H2,22,23,24)/b5-4+/t13-/m0/s1" 
A3Z InChIKey         InChI                1.06  NQHWDUVVQOKJBX-IHVVCDCBSA-N                                                                                                                                                
A3Z SMILES_CANONICAL CACTVS               3.385 "C/C=C/C(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)CO[P](O)(O)=O"                                                                                                                 
A3Z SMILES           CACTVS               3.385 "CC=CC(=O)SCCNC(=O)CCNC(=O)[CH](O)C(C)(C)CO[P](O)(O)=O"                                                                                                                    
A3Z SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C/C=C/C(=O)SCCNC(=O)CCNC(=O)[C@@H](C(C)(C)COP(=O)(O)O)O"                                                                                                                  
A3Z SMILES           "OpenEye OEToolkits" 2.0.7 "CC=CC(=O)SCCNC(=O)CCNC(=O)C(C(C)(C)COP(=O)(O)O)O"                                                                                                                         
# 
_pdbx_chem_comp_identifier.comp_id           A3Z 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "~{S}-[2-[3-[[(2~{R})-3,3-dimethyl-2-oxidanyl-4-phosphonooxy-butanoyl]amino]propanoylamino]ethyl] (~{E})-but-2-enethioate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A3Z "Create component" 2023-07-17 PDBE 
A3Z "Initial release"  2023-11-22 RCSB 
A3Z "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            A3Z 
_pdbx_chem_comp_pcm.modified_residue_id                SER 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               O23 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   CB 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
