data_3YZ
# 
_chem_comp.id                                    3YZ 
_chem_comp.name                                  "[(3S,4R)-3-amino-4-hydroxypiperidin-1-yl]{2-[1-(cyclopropylmethyl)-1H-pyrrolo[2,3-b]pyridin-2-yl]-7-methoxy-1-methyl-1H-benzimidazol-5-yl}methanone" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C26 H30 N6 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2014-12-10 
_chem_comp.pdbx_modified_date                    2015-01-23 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        474.555 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     3YZ 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4X8C 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
3YZ C14 C1  C 0 1 Y N N 31.914 45.140 31.672 -7.818 0.476  1.113  C14 3YZ 1  
3YZ C13 C2  C 0 1 Y N N 30.605 44.811 31.432 -6.900 -0.539 1.301  C13 3YZ 2  
3YZ C11 C3  C 0 1 Y N N 28.999 44.197 29.496 -4.340 -1.082 1.019  C11 3YZ 3  
3YZ C6  C4  C 0 1 Y N N 27.344 42.166 24.180 1.578  -0.460 1.021  C6  3YZ 4  
3YZ C4  C5  C 0 1 Y N N 25.195 43.294 24.001 2.227  -2.390 -0.287 C4  3YZ 5  
3YZ C15 C6  C 0 1 Y N N 32.771 45.199 30.600 -7.392 1.692  0.599  C15 3YZ 6  
3YZ C12 C7  C 0 1 Y N N 30.209 44.555 30.138 -5.565 -0.290 0.966  C12 3YZ 7  
3YZ C5  C8  C 0 1 Y N N 26.139 42.398 23.560 2.567  -1.306 0.533  C5  3YZ 8  
3YZ C7  C9  C 0 1 Y N N 27.591 42.899 25.324 0.241  -0.694 0.692  C7  3YZ 9  
3YZ C25 C10 C 0 1 Y N N 26.652 43.801 25.775 -0.091 -1.781 -0.137 C25 3YZ 10 
3YZ C3  C11 C 0 1 Y N N 25.457 44.015 25.139 0.910  -2.619 -0.626 C3  3YZ 11 
3YZ C10 C12 C 0 1 Y N N 29.277 44.090 28.152 -3.338 -0.286 0.562  C10 3YZ 12 
3YZ C17 C13 C 0 1 Y N N 31.175 44.652 29.162 -5.204 0.973  0.454  C17 3YZ 13 
3YZ C9  C14 C 0 1 Y N N 28.423 43.761 27.079 -1.925 -0.682 0.442  C9  3YZ 14 
3YZ C26 C15 C 0 1 N N N 25.850 41.638 22.350 3.982  -1.061 0.879  C26 3YZ 15 
3YZ C21 C16 C 0 1 N N N 31.161 46.645 25.533 -2.480 3.187  -2.615 C21 3YZ 16 
3YZ C22 C17 C 0 1 N N N 31.179 46.893 27.011 -1.845 1.795  -2.625 C22 3YZ 17 
3YZ C30 C18 C 0 1 N N N 24.316 44.373 20.644 4.245  2.053  -0.765 C30 3YZ 18 
3YZ C29 C19 C 0 1 N N N 25.572 43.788 21.240 3.632  1.321  0.434  C29 3YZ 19 
3YZ C35 C20 C 0 1 N N N 25.162 41.683 20.011 5.921  0.426  1.027  C35 3YZ 20 
3YZ C20 C21 C 0 1 N N N 31.877 45.694 26.444 -3.146 2.037  -1.858 C20 3YZ 21 
3YZ C33 C22 C 0 1 N N S 23.905 42.275 19.422 6.508  1.167  -0.178 C33 3YZ 22 
3YZ C31 C23 C 0 1 N N R 24.065 43.769 19.286 5.690  2.434  -0.440 C31 3YZ 23 
3YZ C24 C24 C 0 1 N N N 26.604 45.344 27.743 -2.276 -2.691 -1.058 C24 3YZ 24 
3YZ C1  C25 C 0 1 N N N 24.393 46.153 24.981 1.660  -4.501 -1.872 C1  3YZ 25 
3YZ C19 C26 C 0 1 N N N 31.279 44.359 26.681 -3.071 2.059  -0.330 C19 3YZ 26 
3YZ N16 N1  N 0 1 Y N N 32.460 44.966 29.324 -6.131 1.907  0.289  N16 3YZ 27 
3YZ N8  N2  N 0 1 Y N N 28.692 42.880 26.142 -0.916 -0.064 1.011  N8  3YZ 28 
3YZ N23 N3  N 0 1 Y N N 27.204 44.338 26.897 -1.464 -1.753 -0.279 N23 3YZ 29 
3YZ N18 N4  N 0 1 Y N N 30.600 44.367 27.957 -3.852 0.945  0.214  N18 3YZ 30 
3YZ N28 N5  N 0 1 N N N 25.495 42.354 21.237 4.493  0.183  0.784  N28 3YZ 31 
3YZ N34 N6  N 0 1 N N N 23.774 41.725 18.053 7.903  1.532  0.102  N34 3YZ 32 
3YZ O27 O1  O 0 1 N N N 25.948 40.420 22.405 4.685  -1.980 1.249  O27 3YZ 33 
3YZ O32 O2  O 0 1 N N N 25.198 44.026 18.474 5.714  3.265  0.723  O32 3YZ 34 
3YZ O2  O3  O 0 1 N N N 24.604 44.943 25.692 0.586  -3.673 -1.422 O2  3YZ 35 
3YZ H1  H1  H 0 1 N N N 32.261 45.347 32.674 -8.858 0.323  1.360  H1  3YZ 36 
3YZ H2  H2  H 0 1 N N N 29.896 44.753 32.244 -7.205 -1.497 1.696  H2  3YZ 37 
3YZ H3  H3  H 0 1 N N N 28.042 44.038 29.970 -4.247 -2.102 1.362  H3  3YZ 38 
3YZ H4  H4  H 0 1 N N N 28.056 41.452 23.795 1.842  0.373  1.657  H4  3YZ 39 
3YZ H5  H5  H 0 1 N N N 24.268 43.428 23.464 3.000  -3.049 -0.656 H5  3YZ 40 
3YZ H6  H6  H 0 1 N N N 33.798 45.460 30.811 -8.114 2.481  0.449  H6  3YZ 41 
3YZ H7  H7  H 0 1 N N N 31.735 47.298 24.859 -1.987 3.960  -2.024 H7  3YZ 42 
3YZ H8  H8  H 0 1 N N N 30.228 46.336 25.038 -2.957 3.529  -3.533 H8  3YZ 43 
3YZ H9  H9  H 0 1 N N N 31.766 47.728 27.421 -1.905 1.221  -3.550 H9  3YZ 44 
3YZ H10 H10 H 0 1 N N N 30.259 46.766 27.601 -0.935 1.652  -2.042 H10 3YZ 45 
3YZ H11 H11 H 0 1 N N N 24.433 45.462 20.543 4.228  1.399  -1.637 H11 3YZ 46 
3YZ H12 H12 H 0 1 N N N 23.463 44.155 21.304 3.668  2.954  -0.974 H12 3YZ 47 
3YZ H13 H13 H 0 1 N N N 26.440 44.107 20.645 3.565  2.003  1.282  H13 3YZ 48 
3YZ H14 H14 H 0 1 N N N 25.685 44.145 22.274 2.636  0.963  0.174  H14 3YZ 49 
3YZ H15 H15 H 0 1 N N N 25.001 40.614 20.213 6.437  -0.526 1.158  H15 3YZ 50 
3YZ H16 H16 H 0 1 N N N 25.989 41.800 19.296 6.041  1.032  1.925  H16 3YZ 51 
3YZ H17 H17 H 0 1 N N N 32.976 45.740 26.423 -4.063 1.622  -2.277 H17 3YZ 52 
3YZ H18 H18 H 0 1 N N N 23.028 42.028 20.038 6.470  0.522  -1.056 H18 3YZ 53 
3YZ H19 H19 H 0 1 N N N 23.155 44.203 18.847 6.121  2.976  -1.282 H19 3YZ 54 
3YZ H20 H20 H 0 1 N N N 27.286 45.580 28.573 -2.647 -3.480 -0.403 H20 3YZ 55 
3YZ H21 H21 H 0 1 N N N 26.416 46.254 27.154 -3.119 -2.161 -1.501 H21 3YZ 56 
3YZ H22 H22 H 0 1 N N N 25.653 44.965 28.146 -1.667 -3.130 -1.847 H22 3YZ 57 
3YZ H23 H23 H 0 1 N N N 23.693 46.791 25.541 2.172  -4.931 -1.012 H23 3YZ 58 
3YZ H24 H24 H 0 1 N N N 25.352 46.679 24.860 1.264  -5.301 -2.497 H24 3YZ 59 
3YZ H25 H25 H 0 1 N N N 23.971 45.927 23.991 2.363  -3.901 -2.451 H25 3YZ 60 
3YZ H26 H26 H 0 1 N N N 30.559 44.130 25.882 -2.032 1.962  -0.015 H26 3YZ 61 
3YZ H27 H27 H 0 1 N N N 32.072 43.596 26.690 -3.476 3.001  0.040  H27 3YZ 62 
3YZ H28 H28 H 0 1 N N N 23.666 40.732 18.101 8.462  0.712  0.281  H28 3YZ 63 
3YZ H29 H29 H 0 1 N N N 22.974 42.126 17.608 8.292  2.078  -0.651 H29 3YZ 64 
3YZ H31 H31 H 0 1 N N N 25.313 44.964 18.378 5.215  4.088  0.628  H31 3YZ 65 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
3YZ N34 C33 SING N N 1  
3YZ O32 C31 SING N N 2  
3YZ C31 C33 SING N N 3  
3YZ C31 C30 SING N N 4  
3YZ C33 C35 SING N N 5  
3YZ C35 N28 SING N N 6  
3YZ C30 C29 SING N N 7  
3YZ N28 C29 SING N N 8  
3YZ N28 C26 SING N N 9  
3YZ C26 O27 DOUB N N 10 
3YZ C26 C5  SING N N 11 
3YZ C5  C4  DOUB Y N 12 
3YZ C5  C6  SING Y N 13 
3YZ C4  C3  SING Y N 14 
3YZ C6  C7  DOUB Y N 15 
3YZ C1  O2  SING N N 16 
3YZ C3  O2  SING N N 17 
3YZ C3  C25 DOUB Y N 18 
3YZ C7  C25 SING Y N 19 
3YZ C7  N8  SING Y N 20 
3YZ C21 C20 SING N N 21 
3YZ C21 C22 SING N N 22 
3YZ C25 N23 SING Y N 23 
3YZ N8  C9  DOUB Y N 24 
3YZ C20 C19 SING N N 25 
3YZ C20 C22 SING N N 26 
3YZ C19 N18 SING N N 27 
3YZ N23 C9  SING Y N 28 
3YZ N23 C24 SING N N 29 
3YZ C9  C10 SING N N 30 
3YZ N18 C10 SING Y N 31 
3YZ N18 C17 SING Y N 32 
3YZ C10 C11 DOUB Y N 33 
3YZ C17 N16 DOUB Y N 34 
3YZ C17 C12 SING Y N 35 
3YZ N16 C15 SING Y N 36 
3YZ C11 C12 SING Y N 37 
3YZ C12 C13 DOUB Y N 38 
3YZ C15 C14 DOUB Y N 39 
3YZ C13 C14 SING Y N 40 
3YZ C14 H1  SING N N 41 
3YZ C13 H2  SING N N 42 
3YZ C11 H3  SING N N 43 
3YZ C6  H4  SING N N 44 
3YZ C4  H5  SING N N 45 
3YZ C15 H6  SING N N 46 
3YZ C21 H7  SING N N 47 
3YZ C21 H8  SING N N 48 
3YZ C22 H9  SING N N 49 
3YZ C22 H10 SING N N 50 
3YZ C30 H11 SING N N 51 
3YZ C30 H12 SING N N 52 
3YZ C29 H13 SING N N 53 
3YZ C29 H14 SING N N 54 
3YZ C35 H15 SING N N 55 
3YZ C35 H16 SING N N 56 
3YZ C20 H17 SING N N 57 
3YZ C33 H18 SING N N 58 
3YZ C31 H19 SING N N 59 
3YZ C24 H20 SING N N 60 
3YZ C24 H21 SING N N 61 
3YZ C24 H22 SING N N 62 
3YZ C1  H23 SING N N 63 
3YZ C1  H24 SING N N 64 
3YZ C1  H25 SING N N 65 
3YZ C19 H26 SING N N 66 
3YZ C19 H27 SING N N 67 
3YZ N34 H28 SING N N 68 
3YZ N34 H29 SING N N 69 
3YZ O32 H31 SING N N 70 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
3YZ SMILES           ACDLabs              12.01 "O=C(c5cc4nc(c2cc1cccnc1n2CC3CC3)n(c4c(OC)c5)C)N6CCC(O)C(N)C6"                                                                                                                                           
3YZ InChI            InChI                1.03  "InChI=1S/C26H30N6O3/c1-30-23-19(10-17(12-22(23)35-2)26(34)31-9-7-21(33)18(27)14-31)29-25(30)20-11-16-4-3-8-28-24(16)32(20)13-15-5-6-15/h3-4,8,10-12,15,18,21,33H,5-7,9,13-14,27H2,1-2H3/t18-,21+/m0/s1" 
3YZ InChIKey         InChI                1.03  SHBUAYSOPVZNDD-GHTZIAJQSA-N                                                                                                                                                                              
3YZ SMILES_CANONICAL CACTVS               3.385 "COc1cc(cc2nc(n(C)c12)c3cc4cccnc4n3CC5CC5)C(=O)N6CC[C@@H](O)[C@@H](N)C6"                                                                                                                                 
3YZ SMILES           CACTVS               3.385 "COc1cc(cc2nc(n(C)c12)c3cc4cccnc4n3CC5CC5)C(=O)N6CC[CH](O)[CH](N)C6"                                                                                                                                     
3YZ SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "Cn1c2c(cc(cc2OC)C(=O)N3CC[C@H]([C@H](C3)N)O)nc1c4cc5cccnc5n4CC6CC6"                                                                                                                                     
3YZ SMILES           "OpenEye OEToolkits" 1.9.2 "Cn1c2c(cc(cc2OC)C(=O)N3CCC(C(C3)N)O)nc1c4cc5cccnc5n4CC6CC6"                                                                                                                                             
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
3YZ "SYSTEMATIC NAME" ACDLabs              12.01 "[(3S,4R)-3-amino-4-hydroxypiperidin-1-yl]{2-[1-(cyclopropylmethyl)-1H-pyrrolo[2,3-b]pyridin-2-yl]-7-methoxy-1-methyl-1H-benzimidazol-5-yl}methanone" 
3YZ "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "[(3S,4R)-3-azanyl-4-oxidanyl-piperidin-1-yl]-[2-[1-(cyclopropylmethyl)pyrrolo[2,3-b]pyridin-2-yl]-7-methoxy-1-methyl-benzimidazol-5-yl]methanone"    
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
3YZ "Create component" 2014-12-10 RCSB 
3YZ "Initial release"  2015-01-28 RCSB 
# 
