data_1RZ
#

_chem_comp.id                                   1RZ
_chem_comp.name                                 "Lamivudine Triphosphate"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C8 H14 N3 O12 P3 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        
;Lamivudine-5'-triphosphate; 3TC Triphosphate;
[[(2R,5S)-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-1,3-oxathiolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono
hydrogen phosphate
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2013-05-14
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       469.196
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    1RZ
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       4K4H
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
1RZ  O3G    O3G    O  0  1  N  N  N  -35.430  25.381   8.303  -4.149  -2.618   1.862  O3G    1RZ   1  
1RZ  PG     PG     P  0  1  N  N  N  -34.441  24.377   7.748  -4.567  -1.447   0.839  PG     1RZ   2  
1RZ  O1G    O1G    O  0  1  N  N  N  -33.714  24.801   6.520  -5.391  -0.443   1.550  O1G    1RZ   3  
1RZ  PB     PB     P  0  1  N  N  N  -33.022  23.071   9.883  -2.945   0.681  -0.436  PB     1RZ   4  
1RZ  O2B    O2B    O  0  1  N  N  N  -34.325  22.521  10.393  -3.634   1.753   0.317  O2B    1RZ   5  
1RZ  O1B    O1B    O  0  1  N  N  N  -32.009  23.591  10.867  -3.485   0.658  -1.953  O1B    1RZ   6  
1RZ  O3A    O3A    O  0  1  N  N  N  -32.218  22.032   8.951  -1.359   0.958  -0.435  O3A    1RZ   7  
1RZ  PA     PA     P  0  1  N  N  N  -32.512  20.451   8.733  -0.455   2.282  -0.583  PA     1RZ   8  
1RZ  O1A    O1A    O  0  1  N  N  N  -31.690  20.033   7.529  -1.016   3.359   0.263  O1A    1RZ   9  
1RZ  O2A    O2A    O  0  1  N  N  N  -33.994  20.176   8.740  -0.446   2.757  -2.121  O2A    1RZ  10  
1RZ  "O5'"  "O5'"  O  0  1  N  N  N  -31.799  19.857  10.050   1.050   1.960  -0.112  "O5'"  1RZ  11  
1RZ  "C5'"  "C5'"  C  0  1  N  N  N  -32.373  19.883  11.344   2.070   2.957  -0.026  "C5'"  1RZ  12  
1RZ  "C4'"  "C4'"  C  0  1  N  N  R  -31.765  18.738  12.156   3.373   2.315   0.451  "C4'"  1RZ  13  
1RZ  "O4'"  "O4'"  O  0  1  N  N  N  -30.356  18.882  12.170   3.803   1.290  -0.464  "O4'"  1RZ  14  
1RZ  "S3'"  "S3'"  S  0  1  N  N  N  -32.172  17.176  11.421   3.105   1.374   2.011  "S3'"  1RZ  15  
1RZ  "C2'"  "C2'"  C  0  1  N  N  N  -30.686  16.509  12.059   4.459   0.176   1.652  "C2'"  1RZ  16  
1RZ  "C1'"  "C1'"  C  0  1  N  N  S  -29.688  17.641  12.168   4.406   0.141   0.105  "C1'"  1RZ  17  
1RZ  N1     N1     N  0  1  N  N  N  -28.763  17.567  11.041   3.649  -1.042  -0.312  N1     1RZ  18  
1RZ  C2     C2     C  0  1  N  N  N  -27.559  17.034  11.248   4.077  -2.269   0.040  C2     1RZ  19  
1RZ  O2     O2     O  0  1  N  N  N  -27.210  16.623  12.488   5.094  -2.382   0.705  O2     1RZ  20  
1RZ  N3     N3     N  0  1  N  N  N  -26.653  16.935  10.262   3.408  -3.361  -0.325  N3     1RZ  21  
1RZ  C4     C4     C  0  1  N  N  N  -26.963  17.331   9.014   2.300  -3.267  -1.048  C4     1RZ  22  
1RZ  N4     N4     N  0  1  N  N  N  -26.041  17.208   8.037   1.617  -4.402  -1.419  N4     1RZ  23  
1RZ  C5     C5     C  0  1  N  N  N  -28.233  17.863   8.751   1.825  -1.996  -1.433  C5     1RZ  24  
1RZ  C6     C6     C  0  1  N  N  N  -29.127  17.962   9.807   2.513  -0.895  -1.049  C6     1RZ  25  
1RZ  O3B    O3B    O  0  1  N  N  N  -33.309  24.313   8.894  -3.242  -0.740   0.261  O3B    1RZ  26  
1RZ  O2C    O2C    O  0  1  N  N  N  -35.044  22.990   7.679  -5.416  -2.074  -0.377  O2C    1RZ  27  
1RZ  H1     H1     H  0  1  N  N  N  -35.432  26.159   7.757  -4.899  -3.088   2.250  H1     1RZ  28  
1RZ  H2     H2     H  0  1  N  N  N  -32.348  23.498  11.750  -3.076  -0.022  -2.506  H2     1RZ  29  
1RZ  H3     H3     H  0  1  N  N  N  -34.240  19.745   7.930  -0.090   2.099  -2.734  H3     1RZ  30  
1RZ  H4     H4     H  0  1  N  N  N  -32.152  20.844  11.831   2.224   3.405  -1.008  H4     1RZ  31  
1RZ  H5     H5     H  0  1  N  N  N  -33.463  19.751  11.271   1.764   3.729   0.681  H5     1RZ  32  
1RZ  H6     H6     H  0  1  N  N  N  -32.183  18.736  13.174   4.150   3.069   0.580  H6     1RZ  33  
1RZ  H7     H7     H  0  1  N  N  N  -30.867  16.071  13.052   5.420   0.551   2.004  H7     1RZ  34  
1RZ  H8     H8     H  0  1  N  N  N  -30.301  15.733  11.381   4.241  -0.804   2.076  H8     1RZ  35  
1RZ  H9     H9     H  0  1  N  N  N  -29.125  17.519  13.105   5.423   0.054  -0.278  H9     1RZ  36  
1RZ  H10    H10    H  0  1  N  N  N  -25.140  16.826   8.245   1.946  -5.275  -1.152  H10    1RZ  37  
1RZ  H11    H11    H  0  1  N  N  N  -26.258  17.498   7.105   0.807  -4.330  -1.947  H11    1RZ  38  
1RZ  H12    H12    H  0  1  N  N  N  -28.507  18.186   7.757   0.924  -1.903  -2.022  H12    1RZ  39  
1RZ  H13    H13    H  0  1  N  N  N  -30.118  18.357   9.638   2.169   0.089  -1.332  H13    1RZ  40  
1RZ  H14    H14    H  0  1  N  N  N  -34.853  22.603   6.833  -4.937  -2.740  -0.888  H14    1RZ  41  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
1RZ  O1G    PG     DOUB  N  N   1  
1RZ  O1A    PA     DOUB  N  N   2  
1RZ  O2C    PG     SING  N  N   3  
1RZ  PG     O3G    SING  N  N   4  
1RZ  PG     O3B    SING  N  N   5  
1RZ  N4     C4     SING  N  N   6  
1RZ  PA     O2A    SING  N  N   7  
1RZ  PA     O3A    SING  N  N   8  
1RZ  PA     "O5'"  SING  N  N   9  
1RZ  C5     C4     SING  N  N  10  
1RZ  C5     C6     DOUB  N  N  11  
1RZ  O3B    PB     SING  N  N  12  
1RZ  O3A    PB     SING  N  N  13  
1RZ  C4     N3     DOUB  N  N  14  
1RZ  C6     N1     SING  N  N  15  
1RZ  PB     O2B    DOUB  N  N  16  
1RZ  PB     O1B    SING  N  N  17  
1RZ  "O5'"  "C5'"  SING  N  N  18  
1RZ  N3     C2     SING  N  N  19  
1RZ  N1     C2     SING  N  N  20  
1RZ  N1     "C1'"  SING  N  N  21  
1RZ  C2     O2     DOUB  N  N  22  
1RZ  "C5'"  "C4'"  SING  N  N  23  
1RZ  "S3'"  "C2'"  SING  N  N  24  
1RZ  "S3'"  "C4'"  SING  N  N  25  
1RZ  "C2'"  "C1'"  SING  N  N  26  
1RZ  "C4'"  "O4'"  SING  N  N  27  
1RZ  "C1'"  "O4'"  SING  N  N  28  
1RZ  O3G    H1     SING  N  N  29  
1RZ  O1B    H2     SING  N  N  30  
1RZ  O2A    H3     SING  N  N  31  
1RZ  "C5'"  H4     SING  N  N  32  
1RZ  "C5'"  H5     SING  N  N  33  
1RZ  "C4'"  H6     SING  N  N  34  
1RZ  "C2'"  H7     SING  N  N  35  
1RZ  "C2'"  H8     SING  N  N  36  
1RZ  "C1'"  H9     SING  N  N  37  
1RZ  N4     H10    SING  N  N  38  
1RZ  N4     H11    SING  N  N  39  
1RZ  C5     H12    SING  N  N  40  
1RZ  C6     H13    SING  N  N  41  
1RZ  O2C    H14    SING  N  N  42  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
1RZ  InChI             InChI                 1.03   "InChI=1S/C8H14N3O12P3S/c9-5-1-2-11(8(12)10-5)6-4-27-7(21-6)3-20-25(16,17)23-26(18,19)22-24(13,14)15/h1-2,6-7H,3-4H2,(H,16,17)(H,18,19)(H2,9,10,12)(H2,13,14,15)/t6-,7+/m0/s1"  
1RZ  InChIKey          InChI                 1.03   YLEQMGZZMCJKCN-NKWVEPMBSA-N  
1RZ  SMILES_CANONICAL  CACTVS                3.385  "NC1=NC(=O)N(C=C1)[C@@H]2CS[C@H](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O2"  
1RZ  SMILES            CACTVS                3.385  "NC1=NC(=O)N(C=C1)[CH]2CS[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O2"  
1RZ  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "C1[C@H](O[C@H](S1)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)N2C=CC(=NC2=O)N"  
1RZ  SMILES            "OpenEye OEToolkits"  1.7.6  "C1C(OC(S1)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)N2C=CC(=NC2=O)N"  
#
_pdbx_chem_comp_identifier.comp_id          1RZ
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  1.7.6
_pdbx_chem_comp_identifier.identifier       "[[(2R,5S)-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-1,3-oxathiolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
1RZ  "Create component"  2013-05-14  RCSB  
1RZ  "Initial release"   2014-07-16  RCSB  
1RZ  "Modify name"       2019-07-11  RCSB  
1RZ  "Modify synonyms"   2020-06-05  PDBE  
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  1RZ  "Lamivudine-5'-triphosphate"                                                                                                           ?  ?  
2  1RZ  "3TC Triphosphate"                                                                                                                     ?  ?  
3  1RZ  "[[(2R,5S)-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-1,3-oxathiolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate"  ?  ?  
##
