data_VLX
# 
_chem_comp.id                                    VLX 
_chem_comp.name                                  "(2S)-2-[(4R)-2-oxidanylidene-4-propyl-pyrrolidin-1-yl]butanamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C11 H20 N2 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-07-28 
_chem_comp.pdbx_modified_date                    2024-04-26 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        212.289 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     VLX 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8K77 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
VLX C10 C1  C 0 1 N N N N N N 124.036 117.584 107.802 -5.603 0.214  -0.196 C10 VLX 1  
VLX C7  C2  C 0 1 N N N N N N 122.880 118.356 107.173 -4.274 -0.533 -0.066 C7  VLX 2  
VLX C5  C3  C 0 1 N N S N N N 120.354 123.205 107.047 1.900  0.451  -0.569 C5  VLX 3  
VLX C4  C4  C 0 1 N N N N N N 121.793 118.598 108.215 -3.138 0.358  -0.572 C4  VLX 4  
VLX C3  C5  C 0 1 N N N N N N 120.614 120.298 109.530 -1.371 -0.489 1.038  C3  VLX 5  
VLX C2  C6  C 0 1 N N N N N N 121.758 121.012 107.483 -0.652 0.430  -1.058 C2  VLX 6  
VLX C1  C7  C 0 1 N N R N N N 121.808 120.073 108.687 -1.809 -0.389 -0.442 C1  VLX 7  
VLX C6  C8  C 0 1 N N N N N N 119.981 121.572 109.055 0.133  -0.333 0.995  C6  VLX 8  
VLX C11 C9  C 0 1 N N N N N N 121.608 125.114 106.059 1.781  2.800  0.273  C11 VLX 9  
VLX C8  C10 C 0 1 N N N N N N 121.524 123.591 106.147 2.507  1.460  0.408  C8  VLX 10 
VLX C9  C11 C 0 1 N N N N N N 119.133 122.923 106.186 2.692  -0.830 -0.525 C9  VLX 11 
VLX N1  N1  N 0 1 N N N N N N 120.680 122.012 107.803 0.511  0.179  -0.190 N1  VLX 12 
VLX N2  N2  N 0 1 N N N N N N 117.864 123.552 106.489 4.003  -0.822 -0.838 N2  VLX 13 
VLX O1  O1  O 0 1 N N N N N N 119.084 122.137 109.577 0.887  -0.625 1.898  O1  VLX 14 
VLX O2  O2  O 0 1 N N N N N N 119.225 122.183 105.271 2.151  -1.868 -0.208 O2  VLX 15 
VLX H1  H1  H 0 1 N N N N N N 124.817 117.412 107.047 -6.413 -0.421 0.165  H1  VLX 16 
VLX H2  H2  H 0 1 N N N N N N 124.455 118.166 108.636 -5.566 1.127  0.398  H2  VLX 17 
VLX H3  H3  H 0 1 N N N N N N 123.670 116.617 108.177 -5.778 0.467  -1.241 H3  VLX 18 
VLX H4  H4  H 0 1 N N N N N N 123.248 119.322 106.798 -4.100 -0.786 0.980  H4  VLX 19 
VLX H5  H5  H 0 1 N N N N N N 122.463 117.773 106.339 -4.312 -1.446 -0.660 H5  VLX 20 
VLX H6  H6  H 0 1 N N N N N N 120.132 124.039 107.729 1.927  0.860  -1.578 H6  VLX 21 
VLX H7  H7  H 0 1 N N N N N N 120.812 118.370 107.773 -3.312 0.611  -1.617 H7  VLX 22 
VLX H8  H8  H 0 1 N N N N N N 121.968 117.940 109.079 -3.100 1.271  0.022  H8  VLX 23 
VLX H9  H9  H 0 1 N N N N N N 119.909 119.461 109.419 -1.822 0.313  1.623  H9  VLX 24 
VLX H10 H10 H 0 1 N N N N N N 120.908 120.392 110.586 -1.643 -1.460 1.451  H10 VLX 25 
VLX H11 H11 H 0 1 N N N N N N 121.506 120.454 106.569 -0.446 0.088  -2.072 H11 VLX 26 
VLX H12 H12 H 0 1 N N N N N N 122.725 121.518 107.349 -0.900 1.491  -1.059 H12 VLX 27 
VLX H13 H13 H 0 1 N N N N N N 122.725 120.262 109.265 -1.873 -1.378 -0.897 H13 VLX 28 
VLX H14 H14 H 0 1 N N N N N N 122.450 125.398 105.411 1.888  3.171  -0.746 H14 VLX 29 
VLX H15 H15 H 0 1 N N N N N N 120.672 125.509 105.638 0.723  2.665  0.501  H15 VLX 30 
VLX H16 H16 H 0 1 N N N N N N 121.762 125.531 107.065 2.213  3.519  0.969  H16 VLX 31 
VLX H17 H17 H 0 1 N N N N N N 121.369 123.172 105.142 2.399  1.089  1.427  H17 VLX 32 
VLX H18 H18 H 0 1 N N N N N N 122.459 123.195 106.569 3.564  1.595  0.180  H18 VLX 33 
VLX H19 H19 H 0 1 N N N N N N 117.063 123.360 105.922 4.436  0.007  -1.091 H19 VLX 34 
VLX H20 H20 H 0 1 N N N N N N 117.789 124.178 107.265 4.513  -1.647 -0.809 H20 VLX 35 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
VLX O2  C9  DOUB N N 1  
VLX C11 C8  SING N N 2  
VLX C8  C5  SING N N 3  
VLX C9  N2  SING N N 4  
VLX C9  C5  SING N N 5  
VLX C5  N1  SING N N 6  
VLX C7  C10 SING N N 7  
VLX C7  C4  SING N N 8  
VLX C2  N1  SING N N 9  
VLX C2  C1  SING N N 10 
VLX N1  C6  SING N N 11 
VLX C4  C1  SING N N 12 
VLX C1  C3  SING N N 13 
VLX C6  C3  SING N N 14 
VLX C6  O1  DOUB N N 15 
VLX C10 H1  SING N N 16 
VLX C10 H2  SING N N 17 
VLX C10 H3  SING N N 18 
VLX C7  H4  SING N N 19 
VLX C7  H5  SING N N 20 
VLX C5  H6  SING N N 21 
VLX C4  H7  SING N N 22 
VLX C4  H8  SING N N 23 
VLX C3  H9  SING N N 24 
VLX C3  H10 SING N N 25 
VLX C2  H11 SING N N 26 
VLX C2  H12 SING N N 27 
VLX C1  H13 SING N N 28 
VLX C11 H14 SING N N 29 
VLX C11 H15 SING N N 30 
VLX C11 H16 SING N N 31 
VLX C8  H17 SING N N 32 
VLX C8  H18 SING N N 33 
VLX N2  H19 SING N N 34 
VLX N2  H20 SING N N 35 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
VLX InChI            InChI                1.06  "InChI=1S/C11H20N2O2/c1-3-5-8-6-10(14)13(7-8)9(4-2)11(12)15/h8-9H,3-7H2,1-2H3,(H2,12,15)/t8-,9+/m1/s1" 
VLX InChIKey         InChI                1.06  MSYKRHVOOPPJKU-BDAKNGLRSA-N                                                                            
VLX SMILES_CANONICAL CACTVS               3.385 "CCC[C@H]1CN([C@@H](CC)C(N)=O)C(=O)C1"                                                                 
VLX SMILES           CACTVS               3.385 "CCC[CH]1CN([CH](CC)C(N)=O)C(=O)C1"                                                                    
VLX SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCC[C@@H]1CC(=O)N(C1)[C@@H](CC)C(=O)N"                                                                
VLX SMILES           "OpenEye OEToolkits" 2.0.7 "CCCC1CC(=O)N(C1)C(CC)C(=O)N"                                                                          
# 
_pdbx_chem_comp_identifier.comp_id           VLX 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{S})-2-[(4~{R})-2-oxidanylidene-4-propyl-pyrrolidin-1-yl]butanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
VLX "Create component" 2023-07-28 PDBJ 
VLX "Initial release"  2024-05-01 RCSB 
# 
