data_QDX
# 
_chem_comp.id                                    QDX 
_chem_comp.name                                  "(2P)-4-({6-[({[(3aS,4R,7R,10aS)-2,6-diamino-10,10-dihydroxy-3a,4,9,10-tetrahydro-3H,8H-pyrrolo[1,2-c]purin-4-yl]methoxy}carbonyl)amino]hexyl}carbamoyl)-2-{[4aP,9(9a)P]-6-hydroxy-3-oxo-3H-xanthen-9-yl}benzoic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C37 H40 N8 O10" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-06-07 
_chem_comp.pdbx_modified_date                    2022-10-28 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        756.761 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     QDX 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8D6O 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
QDX O10 O1  O 0 1 N N N -56.503 26.322 17.556 -12.041 -3.920 -2.537 O10 QDX 1  
QDX C14 C1  C 0 1 N N N -55.891 12.594 11.857 0.676   0.691  -0.410 C14 QDX 2  
QDX C15 C2  C 0 1 N N N -54.884 13.767 11.727 -0.581  0.191  0.305  C15 QDX 3  
QDX C17 C3  C 0 1 N N N -55.157 17.437 12.693 -4.241  0.384  -0.326 C17 QDX 4  
QDX C18 C4  C 0 1 Y N N -54.564 18.313 13.821 -5.457  -0.098 0.367  C18 QDX 5  
QDX C01 C5  C 0 1 N N N -50.092 17.704 9.217  11.832  -2.470 1.216  C01 QDX 6  
QDX C02 C6  C 0 1 N N N -48.990 17.125 8.676  10.789  -2.320 0.078  C02 QDX 7  
QDX C03 C7  C 0 1 N N N -48.485 14.969 7.685  10.748  -0.665 -1.890 C03 QDX 8  
QDX C04 C8  C 0 1 N N R -50.242 13.866 6.432  10.347  1.285  -0.564 C04 QDX 9  
QDX C05 C9  C 0 1 N N S -51.132 15.063 6.413  11.664  1.123  0.188  C05 QDX 10 
QDX C06 C10 C 0 1 N N S -50.758 16.102 7.398  12.125  -0.338 0.155  C06 QDX 11 
QDX C07 C11 C 0 1 N N N -51.381 17.049 8.707  12.178  -0.987 1.538  C07 QDX 12 
QDX C08 C12 C 0 1 N N N -50.364 17.046 5.543  13.720  0.921  -0.830 C08 QDX 13 
QDX C09 C13 C 0 1 N N N -51.047 12.798 7.220  9.214   0.709  0.289  C09 QDX 14 
QDX C10 C14 C 0 1 N N N -52.528 12.814 9.054  6.831   0.579  0.300  C10 QDX 15 
QDX C11 C15 C 0 1 N N N -54.752 11.760 8.381  4.411   0.354  0.464  C11 QDX 16 
QDX C12 C16 C 0 1 N N N -55.840 12.241 9.369  3.172   0.772  -0.331 C12 QDX 17 
QDX C13 C17 C 0 1 N N N -55.599 11.560 10.740 1.915   0.273  0.384  C13 QDX 18 
QDX C16 C18 C 0 1 N N N -55.650 15.114 11.744 -1.820  0.609  -0.489 C16 QDX 19 
QDX C19 C19 C 0 1 Y N N -55.401 19.060 14.658 -6.714  0.159  -0.176 C19 QDX 20 
QDX C20 C20 C 0 1 Y N N -53.187 18.358 14.009 -5.342  -0.816 1.559  C20 QDX 21 
QDX C21 C21 C 0 1 Y N N -54.871 19.855 15.686 -7.858  -0.297 0.477  C21 QDX 22 
QDX C22 C22 C 0 1 Y N N -52.650 19.144 15.025 -6.471  -1.271 2.211  C22 QDX 23 
QDX C23 C23 C 0 1 Y N N -53.481 19.892 15.863 -7.734  -1.016 1.683  C23 QDX 24 
QDX C24 C24 C 0 1 N N N -52.878 20.754 16.980 -8.942  -1.504 2.384  C24 QDX 25 
QDX C25 C25 C 0 1 N N N -55.782 20.685 16.618 -9.192  -0.028 -0.091 C25 QDX 26 
QDX C26 C26 C 0 1 N N N -55.686 22.185 16.581 -9.934  -1.046 -0.729 C26 QDX 27 
QDX C27 C27 C 0 1 Y N N -56.671 20.016 17.481 -9.798  1.303  -0.008 C27 QDX 28 
QDX C28 C28 C 0 1 N N N -54.882 23.242 15.822 -9.408  -2.349 -0.836 C28 QDX 29 
QDX C29 C29 C 0 1 N N N -56.541 22.846 17.460 -11.212 -0.747 -1.261 C29 QDX 30 
QDX C30 C30 C 0 1 Y N N -57.504 20.724 18.337 -11.076 1.508  -0.566 C30 QDX 31 
QDX C31 C31 C 0 1 Y N N -56.943 18.349 17.688 -9.124  2.361  0.617  C31 QDX 32 
QDX C32 C32 C 0 1 N N N -55.173 24.757 16.171 -10.125 -3.322 -1.449 C32 QDX 33 
QDX C33 C33 C 0 1 N N N -56.714 24.022 17.677 -11.934 -1.746 -1.885 C33 QDX 34 
QDX C34 C34 C 0 1 Y N N -58.317 20.274 19.130 -11.654 2.767  -0.489 C34 QDX 35 
QDX C35 C35 C 0 1 Y N N -58.004 18.012 18.731 -9.708  3.591  0.683  C35 QDX 36 
QDX C36 C36 C 0 1 N N N -56.166 25.013 17.170 -11.399 -3.036 -1.984 C36 QDX 37 
QDX C37 C37 C 0 1 Y N N -58.555 19.082 19.321 -10.973 3.802  0.131  C37 QDX 38 
QDX N01 N1  N 0 1 N N N -49.337 16.074 7.945  11.182  -1.120 -0.660 N01 QDX 39 
QDX N02 N2  N 0 1 N N N -48.895 14.014 7.010  10.361  0.601  -1.861 N02 QDX 40 
QDX N03 N3  N 0 1 N N N -50.303 17.189 6.716  13.443  -0.296 -0.478 N03 QDX 41 
QDX N04 N4  N 0 1 N N N -50.901 15.730 5.092  12.745  1.832  -0.517 N04 QDX 42 
QDX N05 N5  N 0 1 N N N -49.987 18.028 4.539  14.891  1.268  -1.462 N05 QDX 43 
QDX N06 N6  N 0 1 N N N -53.718 12.784 8.198  5.614   0.832  -0.221 N06 QDX 44 
QDX N07 N7  N 0 1 N N N -47.135 15.012 8.241  10.722  -1.443 -3.023 N07 QDX 45 
QDX N08 N8  N 0 1 N N N -55.094 15.971 12.806 -3.024  0.131  0.195  N08 QDX 46 
QDX O01 O2  O 0 1 N N N -51.909 16.203 9.705  11.199  -0.413 2.407  O01 QDX 47 
QDX O02 O3  O 0 1 N N N -52.301 17.978 8.161  13.487  -0.879 2.101  O02 QDX 48 
QDX O03 O4  O 0 1 N N N -51.298 13.271 8.526  7.937   1.018  -0.330 O03 QDX 49 
QDX O04 O5  O 0 1 N N N -52.593 12.471 10.188 6.930   -0.046 1.337  O04 QDX 50 
QDX O05 O6  O 0 1 N N N -55.656 17.943 11.739 -4.340  1.009  -1.363 O05 QDX 51 
QDX O06 O7  O 0 1 N N N -52.339 21.861 16.702 -10.043 -1.285 1.920  O06 QDX 52 
QDX O07 O8  O 0 1 N N N -52.923 20.357 18.177 -8.821  -2.191 3.536  O07 QDX 53 
QDX O08 O9  O 0 1 N N N -57.345 22.021 18.229 -11.731 0.495  -1.168 O08 QDX 54 
QDX O09 O10 O 0 1 N N N -59.535 18.806 20.286 -11.540 5.032  0.204  O09 QDX 55 
QDX H2  H2  H 0 1 N N N -56.918 12.974 11.750 0.722   0.257  -1.409 H2  QDX 56 
QDX H3  H3  H 0 1 N N N -55.778 12.117 12.842 0.643   1.777  -0.487 H3  QDX 57 
QDX H4  H4  H 0 1 N N N -54.331 13.672 10.781 -0.548  -0.895 0.382  H4  QDX 58 
QDX H5  H5  H 0 1 N N N -54.177 13.737 12.569 -0.627  0.625  1.304  H5  QDX 59 
QDX H6  H6  H 0 1 N N N -50.048 17.602 10.311 11.393  -2.963 2.083  H6  QDX 60 
QDX H7  H7  H 0 1 N N N -50.103 18.771 8.949  12.713  -3.009 0.869  H7  QDX 61 
QDX H8  H8  H 0 1 N N N -48.317 16.800 9.483  10.819  -3.191 -0.577 H8  QDX 62 
QDX H9  H9  H 0 1 N N N -48.471 17.856 8.038  9.790   -2.197 0.495  H9  QDX 63 
QDX H10 H10 H 0 1 N N N -50.137 13.502 5.399  10.162  2.347  -0.726 H10 QDX 64 
QDX H11 H11 H 0 1 N N N -52.187 14.771 6.525  11.563  1.470  1.216  H11 QDX 65 
QDX H12 H12 H 0 1 N N N -52.002 12.607 6.709  9.330   -0.373 0.363  H12 QDX 66 
QDX H13 H13 H 0 1 N N N -50.466 11.865 7.273  9.251   1.148  1.286  H13 QDX 67 
QDX H14 H14 H 0 1 N N N -55.219 11.543 7.409  4.365   0.787  1.463  H14 QDX 68 
QDX H15 H15 H 0 1 N N N -54.286 10.845 8.776  4.443   -0.733 0.540  H15 QDX 69 
QDX H16 H16 H 0 1 N N N -55.781 13.334 9.482  3.139   1.859  -0.407 H16 QDX 70 
QDX H17 H17 H 0 1 N N N -56.834 11.965 8.988  3.217   0.338  -1.330 H17 QDX 71 
QDX H18 H18 H 0 1 N N N -56.271 10.696 10.849 1.869   0.706  1.383  H18 QDX 72 
QDX H19 H19 H 0 1 N N N -54.554 11.223 10.809 1.947   -0.814 0.461  H19 QDX 73 
QDX H20 H20 H 0 1 N N N -55.538 15.614 10.771 -1.853  1.696  -0.566 H20 QDX 74 
QDX H21 H21 H 0 1 N N N -56.716 14.929 11.940 -1.774  0.176  -1.489 H21 QDX 75 
QDX H22 H22 H 0 1 N N N -56.470 19.024 14.511 -6.802  0.711  -1.100 H22 QDX 76 
QDX H23 H23 H 0 1 N N N -52.535 17.784 13.368 -4.365  -1.016 1.973  H23 QDX 77 
QDX H24 H24 H 0 1 N N N -51.580 19.176 15.167 -6.374  -1.826 3.132  H24 QDX 78 
QDX H25 H25 H 0 1 N N N -54.147 22.966 15.080 -8.433  -2.572 -0.429 H25 QDX 79 
QDX H26 H26 H 0 1 N N N -56.410 17.594 17.129 -8.145  2.203  1.044  H26 QDX 80 
QDX H27 H27 H 0 1 N N N -54.647 25.561 15.678 -9.720  -4.320 -1.530 H27 QDX 81 
QDX H28 H28 H 0 1 N N N -57.459 24.244 18.426 -12.910 -1.532 -2.295 H28 QDX 82 
QDX H29 H29 H 0 1 N N N -58.878 20.987 19.716 -12.632 2.941  -0.913 H29 QDX 83 
QDX H30 H30 H 0 1 N N N -58.287 16.998 18.973 -9.189  4.407  1.164  H30 QDX 84 
QDX H31 H31 H 0 1 N N N -51.062 15.388 4.166  12.764  2.779  -0.724 H31 QDX 85 
QDX H32 H32 H 0 1 N N N -49.638 18.922 4.820  15.553  0.588  -1.664 H32 QDX 86 
QDX H33 H33 H 0 1 N N N -50.076 17.809 3.567  15.055  2.192  -1.707 H33 QDX 87 
QDX H34 H34 H 0 1 N N N -53.826 13.471 7.480  5.535   1.330  -1.049 H34 QDX 88 
QDX H35 H35 H 0 1 N N N -46.504 14.252 8.082  11.019  -2.365 -2.985 H35 QDX 89 
QDX H36 H36 H 0 1 N N N -46.841 15.801 8.781  10.407  -1.069 -3.861 H36 QDX 90 
QDX H37 H37 H 0 1 N N N -54.671 15.553 13.610 -2.945  -0.367 1.024  H37 QDX 91 
QDX H38 H38 H 0 1 N N N -52.249 16.729 10.419 11.193  -0.791 3.296  H38 QDX 92 
QDX H39 H39 H 0 1 N N N -52.661 18.514 8.858  13.571  -1.276 2.979  H39 QDX 93 
QDX H40 H40 H 0 1 N N N -52.511 21.001 18.741 -9.639  -2.489 3.957  H40 QDX 94 
QDX H41 H41 H 0 1 N N N -59.864 19.621 20.646 -12.077 5.171  0.996  H41 QDX 95 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
QDX N05 C08 SING N N 1   
QDX N04 C08 SING N N 2   
QDX N04 C05 SING N N 3   
QDX C08 N03 DOUB N N 4   
QDX C05 C04 SING N N 5   
QDX C05 C06 SING N N 6   
QDX C04 N02 SING N N 7   
QDX C04 C09 SING N N 8   
QDX N03 C06 SING N N 9   
QDX N02 C03 DOUB N N 10  
QDX C09 O03 SING N N 11  
QDX C06 N01 SING N N 12  
QDX C06 C07 SING N N 13  
QDX C03 N01 SING N N 14  
QDX C03 N07 SING N N 15  
QDX N01 C02 SING N N 16  
QDX O02 C07 SING N N 17  
QDX N06 C11 SING N N 18  
QDX N06 C10 SING N N 19  
QDX C11 C12 SING N N 20  
QDX O03 C10 SING N N 21  
QDX C02 C01 SING N N 22  
QDX C07 C01 SING N N 23  
QDX C07 O01 SING N N 24  
QDX C10 O04 DOUB N N 25  
QDX C12 C13 SING N N 26  
QDX C13 C14 SING N N 27  
QDX C15 C16 SING N N 28  
QDX C15 C14 SING N N 29  
QDX O05 C17 DOUB N N 30  
QDX C16 N08 SING N N 31  
QDX C17 N08 SING N N 32  
QDX C17 C18 SING N N 33  
QDX C18 C20 DOUB Y N 34  
QDX C18 C19 SING Y N 35  
QDX C20 C22 SING Y N 36  
QDX C19 C21 DOUB Y N 37  
QDX C22 C23 DOUB Y N 38  
QDX C21 C23 SING Y N 39  
QDX C21 C25 SING N N 40  
QDX C28 C32 DOUB N N 41  
QDX C28 C26 SING N N 42  
QDX C23 C24 SING N N 43  
QDX C32 C36 SING N N 44  
QDX C26 C25 DOUB N N 45  
QDX C26 C29 SING N N 46  
QDX C25 C27 SING N N 47  
QDX O06 C24 DOUB N N 48  
QDX C24 O07 SING N N 49  
QDX C36 O10 DOUB N N 50  
QDX C36 C33 SING N N 51  
QDX C29 C33 DOUB N N 52  
QDX C29 O08 SING N N 53  
QDX C27 C31 SING Y N 54  
QDX C27 C30 DOUB Y N 55  
QDX C31 C35 DOUB Y N 56  
QDX O08 C30 SING N N 57  
QDX C30 C34 SING Y N 58  
QDX C35 C37 SING Y N 59  
QDX C34 C37 DOUB Y N 60  
QDX C37 O09 SING N N 61  
QDX C14 H2  SING N N 62  
QDX C14 H3  SING N N 63  
QDX C15 H4  SING N N 64  
QDX C15 H5  SING N N 65  
QDX C01 H6  SING N N 66  
QDX C01 H7  SING N N 67  
QDX C02 H8  SING N N 68  
QDX C02 H9  SING N N 69  
QDX C04 H10 SING N N 70  
QDX C05 H11 SING N N 71  
QDX C09 H12 SING N N 72  
QDX C09 H13 SING N N 73  
QDX C11 H14 SING N N 74  
QDX C11 H15 SING N N 75  
QDX C12 H16 SING N N 76  
QDX C12 H17 SING N N 77  
QDX C13 H18 SING N N 78  
QDX C13 H19 SING N N 79  
QDX C16 H20 SING N N 80  
QDX C16 H21 SING N N 81  
QDX C19 H22 SING N N 82  
QDX C20 H23 SING N N 83  
QDX C22 H24 SING N N 84  
QDX C28 H25 SING N N 85  
QDX C31 H26 SING N N 86  
QDX C32 H27 SING N N 87  
QDX C33 H28 SING N N 88  
QDX C34 H29 SING N N 89  
QDX C35 H30 SING N N 90  
QDX N04 H31 SING N N 91  
QDX N05 H32 SING N N 92  
QDX N05 H33 SING N N 93  
QDX N06 H34 SING N N 94  
QDX N07 H35 SING N N 95  
QDX N07 H36 SING N N 96  
QDX N08 H37 SING N N 97  
QDX O01 H38 SING N N 98  
QDX O02 H39 SING N N 99  
QDX O07 H40 SING N N 100 
QDX O09 H41 SING N N 101 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
QDX SMILES           ACDLabs              12.01 "NC=1NC2C(N=C(N)N3CCC(O)(O)C23N=1)COC(=O)NCCCCCCNC(=O)c1cc(C=2c3ccc(O)cc3OC3=CC(=O)C=CC=23)c(cc1)C(=O)O"                                                                                                                                                                                                                  
QDX InChI            InChI                1.03  "InChI=1S/C37H40N8O10/c38-33-43-30-26(42-34(39)45-14-11-36(52,53)37(30,45)44-33)18-54-35(51)41-13-4-2-1-3-12-40-31(48)19-5-8-22(32(49)50)25(15-19)29-23-9-6-20(46)16-27(23)55-28-17-21(47)7-10-24(28)29/h5-10,15-17,26,30,46,52-53H,1-4,11-14,18H2,(H2,39,42)(H,40,48)(H,41,51)(H,49,50)(H3,38,43,44)/t26-,30-,37-/m0/s1" 
QDX InChIKey         InChI                1.03  QYIDXDKVZLZDCC-FLQVHQRGSA-N                                                                                                                                                                                                                                                                                               
QDX SMILES_CANONICAL CACTVS               3.385 "NC1=N[C@@]23[C@@H](N1)[C@H](COC(=O)NCCCCCCNC(=O)c4ccc(C(O)=O)c(c4)C5=C6C=CC(=O)C=C6Oc7cc(O)ccc57)N=C(N)N2CCC3(O)O"                                                                                                                                                                                                       
QDX SMILES           CACTVS               3.385 "NC1=N[C]23[CH](N1)[CH](COC(=O)NCCCCCCNC(=O)c4ccc(C(O)=O)c(c4)C5=C6C=CC(=O)C=C6Oc7cc(O)ccc57)N=C(N)N2CCC3(O)O"                                                                                                                                                                                                            
QDX SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1C(=O)NCCCCCCNC(=O)OC[C@H]2[C@H]3[C@]4(C(CCN4C(=N2)N)(O)O)N=C(N3)N)C5=C6C=CC(=O)C=C6Oc7c5ccc(c7)O)C(=O)O"                                                                                                                                                                                                       
QDX SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1C(=O)NCCCCCCNC(=O)OCC2C3C4(C(CCN4C(=N2)N)(O)O)N=C(N3)N)C5=C6C=CC(=O)C=C6Oc7c5ccc(c7)O)C(=O)O"                                                                                                                                                                                                                  
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
QDX "SYSTEMATIC NAME" ACDLabs              12.01 "(2P)-4-({6-[({[(3aS,4R,7R,10aS)-2,6-diamino-10,10-dihydroxy-3a,4,9,10-tetrahydro-3H,8H-pyrrolo[1,2-c]purin-4-yl]methoxy}carbonyl)amino]hexyl}carbamoyl)-2-{[4aP,9(9a)P]-6-hydroxy-3-oxo-3H-xanthen-9-yl}benzoic acid"       
QDX "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "4-[6-[[(3~{a}~{S},4~{R},10~{a}~{S})-2,6-bis(azanyl)-10,10-bis(oxidanyl)-3~{a},4,8,9-tetrahydro-3~{H}-pyrrolo[1,2-c]purin-4-yl]methoxycarbonylamino]hexylcarbamoyl]-2-(3-oxidanyl-6-oxidanylidene-xanthen-9-yl)benzoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
QDX "Create component"   2022-06-07 RCSB 
QDX "Other modification" 2022-06-07 RCSB 
QDX "Initial release"    2022-11-02 RCSB 
# 
