data_GDX
# 
_chem_comp.id                                    GDX 
_chem_comp.name                                  
;GUANOSINE 5'-(TRIHYDROGEN DIPHOSPHATE), P'-D-MANNOPYRANOSYL ESTER
;
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C16 H23 N5 O17 P2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2002-09-11 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        619.325 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     GDX 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1MFZ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
GDX N2     N2     N 0 1 N N N 119.279 139.922 178.503 8.863  2.049  -1.990 N2     GDX 1  
GDX C2     C2     C 0 1 N N N 119.454 139.911 179.862 7.917  2.077  -0.996 C2     GDX 2  
GDX N1     N1     N 0 1 N N N 118.488 139.357 180.644 8.029  3.005  -0.003 N1     GDX 3  
GDX N3     N3     N 0 1 N N N 120.573 140.448 180.386 6.928  1.213  -1.031 N3     GDX 4  
GDX C4     C4     C 0 1 Y N N 120.786 140.447 181.702 5.983  1.204  -0.083 C4     GDX 5  
GDX C5     C5     C 0 1 Y N N 119.786 139.868 182.605 6.045  2.128  0.967  C5     GDX 6  
GDX C6     C6     C 0 1 N N N 118.580 139.298 181.989 7.112  3.056  0.989  C6     GDX 7  
GDX O6     O6     O 0 1 N N N 117.691 138.794 182.719 7.203  3.882  1.881  O6     GDX 8  
GDX N7     N7     N 0 1 Y N N 120.226 139.997 183.861 4.979  1.896  1.770  N7     GDX 9  
GDX C8     C8     C 0 1 Y N N 121.431 140.616 183.829 4.283  0.908  1.288  C8     GDX 10 
GDX N9     N9     N 0 1 Y N N 121.701 140.870 182.556 4.865  0.448  0.143  N9     GDX 11 
GDX C1D    "C1'A" C 0 1 N N R 122.933 141.296 182.215 4.381  -0.655 -0.692 C1D    GDX 12 
GDX C2D    "C2'A" C 0 1 N N R 123.297 142.504 182.621 5.086  -1.980 -0.307 C2D    GDX 13 
GDX O2D    "O2'A" O 0 1 N N N 122.674 143.342 181.957 6.323  -2.123 -1.008 O2D    GDX 14 
GDX C3D    "C3'A" C 0 1 N N S 124.650 142.600 182.573 4.060  -3.041 -0.776 C3D    GDX 15 
GDX O3D    "O3'A" O 0 1 N N N 125.130 143.182 181.325 4.420  -3.552 -2.060 O3D    GDX 16 
GDX C4D    "C4'A" C 0 1 N N R 125.179 141.382 182.639 2.729  -2.268 -0.857 C4D    GDX 17 
GDX O4D    "O4'A" O 0 1 N N N 124.094 140.460 182.387 2.989  -0.923 -0.423 O4D    GDX 18 
GDX C5D    "C5'A" C 0 1 N N N 125.786 141.120 184.000 1.692  -2.920 0.060  C5D    GDX 19 
GDX O5D    "O5'A" O 0 1 N N N 125.126 141.892 184.999 0.431  -2.269 -0.109 O5D    GDX 20 
GDX PA     PA     P 0 1 N N N 125.167 141.534 186.574 -0.892 -2.697 0.702  PA     GDX 21 
GDX O1A    O1A    O 0 1 N N N 125.777 140.162 186.789 -0.613 -2.662 2.155  O1A    GDX 22 
GDX O2A    O2A    O 0 1 N N N 123.790 141.868 187.106 -1.325 -4.188 0.275  O2A    GDX 23 
GDX O3A    O3A    O 0 1 N N N 126.172 142.624 187.160 -2.086 -1.673 0.360  O3A    GDX 24 
GDX PB     PB     P 0 1 N N N 127.708 142.262 187.364 -3.468 -1.283 1.089  PB     GDX 25 
GDX O2B    O2B    O 0 1 N N N 128.428 143.468 187.906 -3.170 -0.248 2.286  O2B    GDX 26 
GDX O3B    O3B    O 0 1 N N N 128.303 141.909 186.038 -4.098 -2.504 1.638  O3B    GDX 27 
GDX O1B    O1B    O 0 1 N N N 127.837 141.046 188.423 -4.462 -0.599 0.023  O1B    GDX 28 
GDX "C1'"  "C1'"  C 0 1 N N R 128.322 139.824 187.802 -5.808 -0.234 0.336  "C1'"  GDX 29 
GDX "O5'"  "O5'"  O 0 1 N N N 129.770 139.894 187.834 -5.836 1.106  0.831  "O5'"  GDX 30 
GDX "C5'"  "C5'"  C 0 1 N N S 130.245 139.732 189.204 -5.317 2.076  -0.082 "C5'"  GDX 31 
GDX "C6'"  "C6'"  C 0 1 N N N 131.574 139.544 189.169 -5.370 3.442  0.552  "C6'"  GDX 32 
GDX O6A    O6A    O 0 1 N N N 132.043 138.630 188.508 -5.889 3.586  1.633  O6A    GDX 33 
GDX O6B    O6B    O 0 1 N Y N 132.345 140.275 189.778 -4.839 4.498  -0.084 O6B    GDX 34 
GDX "C2'"  "C2'"  C 0 1 N N S 127.879 138.748 188.474 -6.670 -0.329 -0.926 "C2'"  GDX 35 
GDX "O2'"  "O2'"  O 0 1 N N N 128.216 137.705 187.910 -8.026 -0.017 -0.602 "O2'"  GDX 36 
GDX "C3'"  "C3'"  C 0 1 N N S 128.296 138.759 189.756 -6.149 0.666  -1.966 "C3'"  GDX 37 
GDX "O3'"  "O3'"  O 0 1 N N N 127.755 137.840 190.393 -6.992 0.637  -3.120 "O3'"  GDX 38 
GDX "C4'"  "C4'"  C 0 1 N N S 129.647 138.685 189.805 -6.159 2.073  -1.360 "C4'"  GDX 39 
GDX "O4'"  "O4'"  O 0 1 N N N 130.058 138.585 190.961 -5.607 3.000  -2.297 "O4'"  GDX 40 
GDX HN21   HN21   H 0 0 N N N 119.978 140.326 177.912 9.597  2.682  -1.980 HN21   GDX 41 
GDX HN22   HN22   H 0 0 N N N 118.453 139.526 178.102 8.799  1.391  -2.701 HN22   GDX 42 
GDX HN1    HN1    H 0 1 N N N 117.675 138.977 180.203 8.769  3.631  -0.009 HN1    GDX 43 
GDX H8     H8     H 0 1 N N N 122.053 140.857 184.679 3.380  0.512  1.729  H8     GDX 44 
GDX "H1'"  "H1'"  H 0 1 N N N 122.672 141.272 181.147 4.535  -0.431 -1.748 "H1'"  GDX 45 
GDX "H2'"  "H2'"  H 0 1 N N N 123.035 142.700 183.671 5.242  -2.039 0.770  "H2'"  GDX 46 
GDX HO2A   HO2A   H 0 0 N N N 122.923 144.216 182.235 6.801  -2.938 -0.800 HO2A   GDX 47 
GDX "H3'"  "H3'"  H 0 1 N N N 124.945 143.243 183.416 3.989  -3.851 -0.050 "H3'"  GDX 48 
GDX HO3A   HO3A   H 0 0 N N N 126.079 143.227 181.341 5.279  -3.998 -2.080 HO3A   GDX 49 
GDX "H4'"  "H4'"  H 0 1 N N N 125.990 141.268 181.905 2.366  -2.262 -1.885 "H4'"  GDX 50 
GDX "H5'2" "H5'2" H 0 0 N N N 125.680 140.052 184.242 1.594  -3.975 -0.195 "H5'2" GDX 51 
GDX "H5'1" "H5'1" H 0 0 N N N 126.851 141.394 183.978 2.013  -2.824 1.097  "H5'1" GDX 52 
GDX HOA2   HOA2   H 0 0 N N N 123.431 141.112 187.555 -1.524 -4.285 -0.667 HOA2   GDX 53 
GDX HOB2   HOB2   H 0 0 N N N 129.099 143.740 187.291 -2.756 0.577  1.998  HOB2   GDX 54 
GDX "HC1'" "HC1'" H 0 0 N N N 127.957 139.728 186.769 -6.200 -0.910 1.096  "HC1'" GDX 55 
GDX "HC5'" "HC5'" H 0 0 N N N 129.999 140.633 189.784 -4.284 1.828  -0.326 "HC5'" GDX 56 
GDX HO6B   HO6B   H 0 0 N Y N 133.239 139.991 189.625 -4.897 5.354  0.362  HO6B   GDX 57 
GDX "HC2'" "HC2'" H 0 0 N N N 126.780 138.793 188.482 -6.615 -1.341 -1.329 "HC2'" GDX 58 
GDX "HO2'" "HO2'" H 0 0 N N N 127.892 136.960 188.402 -8.419 -0.606 0.056  "HO2'" GDX 59 
GDX "HC3'" "HC3'" H 0 0 N N N 127.998 139.706 190.230 -5.132 0.398  -2.251 "HC3'" GDX 60 
GDX "HO3'" "HO3'" H 0 0 N N N 128.056 137.858 191.294 -7.038 -0.227 -3.551 "HO3'" GDX 61 
GDX "HC4'" "HC4'" H 0 0 N N N 129.914 137.773 189.250 -7.183 2.360  -1.123 "HC4'" GDX 62 
GDX "HO4'" "HO4'" H 0 0 N N N 129.636 137.847 191.385 -5.577 3.912  -1.977 "HO4'" GDX 63 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
GDX N2    C2     SING N N 1  
GDX N2    HN21   SING N N 2  
GDX N2    HN22   SING N N 3  
GDX C2    N1     SING N N 4  
GDX C2    N3     DOUB N N 5  
GDX N1    C6     SING N N 6  
GDX N1    HN1    SING N N 7  
GDX N3    C4     SING N N 8  
GDX C4    C5     DOUB Y N 9  
GDX C4    N9     SING Y N 10 
GDX C5    C6     SING N N 11 
GDX C5    N7     SING Y N 12 
GDX C6    O6     DOUB N N 13 
GDX N7    C8     DOUB Y N 14 
GDX C8    N9     SING Y N 15 
GDX C8    H8     SING N N 16 
GDX N9    C1D    SING N N 17 
GDX C1D   C2D    SING N N 18 
GDX C1D   O4D    SING N N 19 
GDX C1D   "H1'"  SING N N 20 
GDX C2D   O2D    SING N N 21 
GDX C2D   C3D    SING N N 22 
GDX C2D   "H2'"  SING N N 23 
GDX O2D   HO2A   SING N N 24 
GDX C3D   O3D    SING N N 25 
GDX C3D   C4D    SING N N 26 
GDX C3D   "H3'"  SING N N 27 
GDX O3D   HO3A   SING N N 28 
GDX C4D   O4D    SING N N 29 
GDX C4D   C5D    SING N N 30 
GDX C4D   "H4'"  SING N N 31 
GDX C5D   O5D    SING N N 32 
GDX C5D   "H5'2" SING N N 33 
GDX C5D   "H5'1" SING N N 34 
GDX O5D   PA     SING N N 35 
GDX PA    O1A    DOUB N N 36 
GDX PA    O2A    SING N N 37 
GDX PA    O3A    SING N N 38 
GDX O2A   HOA2   SING N N 39 
GDX O3A   PB     SING N N 40 
GDX PB    O2B    SING N N 41 
GDX PB    O3B    DOUB N N 42 
GDX PB    O1B    SING N N 43 
GDX O2B   HOB2   SING N N 44 
GDX O1B   "C1'"  SING N N 45 
GDX "C1'" "O5'"  SING N N 46 
GDX "C1'" "C2'"  SING N N 47 
GDX "C1'" "HC1'" SING N N 48 
GDX "O5'" "C5'"  SING N N 49 
GDX "C5'" "C6'"  SING N N 50 
GDX "C5'" "C4'"  SING N N 51 
GDX "C5'" "HC5'" SING N N 52 
GDX "C6'" O6A    DOUB N N 53 
GDX "C6'" O6B    SING N N 54 
GDX O6B   HO6B   SING N N 55 
GDX "C2'" "O2'"  SING N N 56 
GDX "C2'" "C3'"  SING N N 57 
GDX "C2'" "HC2'" SING N N 58 
GDX "O2'" "HO2'" SING N N 59 
GDX "C3'" "O3'"  SING N N 60 
GDX "C3'" "C4'"  SING N N 61 
GDX "C3'" "HC3'" SING N N 62 
GDX "O3'" "HO3'" SING N N 63 
GDX "C4'" "O4'"  SING N N 64 
GDX "C4'" "HC4'" SING N N 65 
GDX "O4'" "HO4'" SING N N 66 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
GDX SMILES           ACDLabs              12.01 "O=C4NC(=Nc1c4ncn1C2OC(C(O)C2O)COP(=O)(OP(=O)(OC3OC(C(=O)O)C(O)C(O)C3O)O)O)N" 
GDX SMILES_CANONICAL CACTVS               3.370 "NC1=Nc2n(cnc2C(=O)N1)[C@@H]3O[C@H](CO[P](O)(=O)O[P](O)(=O)O[C@H]4O[C@@H]([C@@H](O)[C@H](O)[C@@H]4O)C(O)=O)[C@@H](O)[C@H]3O" 
GDX SMILES           CACTVS               3.370 "NC1=Nc2n(cnc2C(=O)N1)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)O[CH]4O[CH]([CH](O)[CH](O)[CH]4O)C(O)=O)[CH](O)[CH]3O" 
GDX SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "c1nc2c(n1[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@](=O)(O)O[P@@](=O)(O)O[C@@H]4[C@H]([C@H]([C@@H]([C@H](O4)C(=O)O)O)O)O)O)O)N=C(NC2=O)N" 
GDX SMILES           "OpenEye OEToolkits" 1.7.0 "c1nc2c(n1C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OC4C(C(C(C(O4)C(=O)O)O)O)O)O)O)N=C(NC2=O)N" 
GDX InChI            InChI                1.03  
"InChI=1S/C16H23N5O17P2/c17-16-19-11-4(12(27)20-16)18-2-21(11)13-8(25)5(22)3(35-13)1-34-39(30,31)38-40(32,33)37-15-9(26)6(23)7(24)10(36-15)14(28)29/h2-3,5-10,13,15,22-26H,1H2,(H,28,29)(H,30,31)(H,32,33)(H3,17,19,20,27)/t3-,5-,6+,7+,8-,9+,10+,13-,15-/m1/s1" 
GDX InChIKey         InChI                1.03  DNBSDUDYNPJVCN-ZXTXFPBHSA-N 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
GDX "SYSTEMATIC NAME" ACDLabs              12.01 
;(2S,3S,4S,5S,6R)-6-{[(S)-{[(S)-{[(2R,3S,4R,5R)-5-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methoxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]oxy}-3,4,5-trihydroxytetrahydro-2H-pyran-2-carboxylic acid (non-preferred name)
;
GDX "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "(2S,3S,4S,5S,6R)-6-[[[(2R,3S,4R,5R)-5-(2-azanyl-6-oxo-1H-purin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl]oxy-hydroxy-phosphoryl]oxy-3,4,5-trihydroxy-oxane-2-carboxylic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
GDX "Create component"         2002-09-11 RCSB 
GDX "Modify leaving atom flag" 2011-01-07 RCSB 
GDX "Modify descriptor"        2011-06-04 RCSB 
# 
