data_JLU
# 
_chem_comp.id                                    JLU 
_chem_comp.name                                  "9-[(1~{S},6~{R},8~{R},9~{R},10~{R},15~{R},17~{R})-8-(6-aminopurin-9-yl)-9-fluoranyl-3,12-bis(oxidanyl)-3,12-bis(oxidanylidene)-2,4,7,11,13-pentaoxa-3$l^{5},12$l^{5}-diphosphatricyclo[13.3.0.0^{6,10}]octadecan-17-yl]-2-azanyl-3~{H}-purin-6-one" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C21 H25 F N10 O10 P2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-05-05 
_chem_comp.pdbx_modified_date                    2023-10-20 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        658.430 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     JLU 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7ZKU 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
JLU C2   C1  C 0 1 Y N N 29.995 17.749 56.635 9.147   1.517  0.516  C2   JLU 1  
JLU N1   N1  N 0 1 Y N N 29.993 16.616 55.931 9.913   0.968  -0.409 N1   JLU 2  
JLU C5   C2  C 0 1 Y N N 29.013 17.843 54.170 8.138   -0.449 -1.008 C5   JLU 3  
JLU C6   C3  C 0 1 Y N N 29.501 16.626 54.671 9.460   -0.008 -1.188 C6   JLU 4  
JLU C12  C4  C 0 1 N N N 31.493 17.650 45.844 -9.413  -0.129 0.468  C12  JLU 5  
JLU C16  C5  C 0 1 N N N 32.109 16.844 47.976 -9.012  0.919  -1.559 C16  JLU 6  
JLU C14  C6  C 0 1 Y N N 31.907 19.202 47.506 -7.147  0.153  -0.167 C14  JLU 7  
JLU C15  C7  C 0 1 Y N N 32.191 18.224 48.421 -7.570  0.772  -1.337 C15  JLU 8  
JLU C18  C8  C 0 1 Y N N 32.413 20.104 49.420 -5.406  0.745  -1.372 C18  JLU 9  
JLU C21  C9  C 0 1 N N R 28.418 21.352 54.803 4.989   -0.147 0.808  C21  JLU 10 
JLU C22  C10 C 0 1 N N R 29.758 22.075 54.791 4.192   1.026  0.217  C22  JLU 11 
JLU C23  C11 C 0 1 N N R 29.781 22.525 53.344 2.723   0.566  0.248  C23  JLU 12 
JLU C24  C12 C 0 1 N N R 28.390 23.102 53.264 2.758   -0.840 0.867  C24  JLU 13 
JLU C25  C13 C 0 1 N N N 27.883 23.364 51.866 1.904   -1.796 0.032  C25  JLU 14 
JLU C31  C14 C 0 1 N N R 31.819 21.693 47.470 -4.894  -0.407 0.814  C31  JLU 15 
JLU C32  C15 C 0 1 N N N 30.334 21.979 47.313 -4.008  -1.492 0.195  C32  JLU 16 
JLU C33  C16 C 0 1 N N S 30.057 22.447 48.725 -2.553  -1.025 0.302  C33  JLU 17 
JLU C34  C17 C 0 1 N N R 31.087 23.543 48.867 -2.533  0.264  1.129  C34  JLU 18 
JLU C35  C18 C 0 1 N N N 31.325 24.002 50.283 -1.781  1.356  0.368  C35  JLU 19 
JLU C36  C19 C 0 1 N N N 32.341 22.903 48.249 -3.984  0.697  1.358  C36  JLU 20 
JLU C4   C20 C 0 1 Y N N 29.080 18.935 55.018 7.365   0.163  -0.007 C4   JLU 21 
JLU C8   C21 C 0 1 Y N N 28.199 19.478 53.090 6.183   -1.388 -1.035 C8   JLU 22 
JLU F22  F1  F 0 1 N N N 29.684 23.192 55.624 4.359   2.172  1.002  F22  JLU 23 
JLU N11  N2  N 0 1 N N N 31.750 16.630 46.660 -9.856  0.451  -0.626 N11  JLU 24 
JLU N12  N3  N 0 1 N N N 31.149 17.437 44.575 -10.322 -0.592 1.382  N12  JLU 25 
JLU N13  N4  N 0 1 N N N 31.558 18.959 46.219 -8.089  -0.292 0.724  N13  JLU 26 
JLU N17  N5  N 0 1 Y N N 32.513 18.802 49.640 -6.463  1.114  -2.037 N17  JLU 27 
JLU N19  N6  N 0 1 Y N N 32.051 20.397 48.131 -5.787  0.145  -0.207 N19  JLU 28 
JLU N3   N7  N 0 1 Y N N 29.561 18.954 56.266 7.905   1.133  0.724  N3   JLU 29 
JLU N6   N8  N 0 1 N N N 29.505 15.485 53.976 10.270  -0.577 -2.155 N6   JLU 30 
JLU N7   N9  N 0 1 Y N N 28.454 18.199 52.953 7.358   -1.389 -1.595 N7   JLU 31 
JLU N9   N10 N 0 1 Y N N 28.550 19.985 54.322 6.138   -0.449 -0.049 N9   JLU 32 
JLU O16  O1  O 0 1 N N N 32.342 15.885 48.713 -9.436  1.456  -2.571 O16  JLU 33 
JLU O23  O2  O 0 1 N N N 30.797 23.539 53.178 1.943   1.447  1.059  O23  JLU 34 
JLU O24  O3  O 0 1 N N N 27.595 22.081 53.909 4.118   -1.279 0.868  O24  JLU 35 
JLU O25  O4  O 0 1 N N N 27.936 22.145 51.100 0.841   -2.311 0.836  O25  JLU 36 
JLU O33  O5  O 0 1 N N N 28.722 22.989 48.856 -1.770  -2.028 0.951  O33  JLU 37 
JLU O35  O6  O 0 1 N N N 31.972 22.962 51.039 -0.662  1.792  1.142  O35  JLU 38 
JLU P25  P1  P 0 1 N N N 27.580 22.137 49.555 -0.563  -2.805 0.223  P25  JLU 39 
JLU P35  P2  P 0 1 N N N 32.215 23.138 52.593 0.713   2.311  0.483  P35  JLU 40 
JLU O25A O7  O 0 0 N N N 26.261 22.815 49.344 -0.724  -4.390 0.460  O25A JLU 41 
JLU O25B O8  O 0 0 N N N 27.624 20.728 49.048 -0.595  -2.518 -1.229 O25B JLU 42 
JLU O35A O9  O 0 0 N N N 33.177 24.262 52.820 0.913   3.738  0.818  O35A JLU 43 
JLU O35B O10 O 0 0 N N N 32.645 21.830 53.181 0.639   2.140  -1.116 O35B JLU 44 
JLU H1   H1  H 0 1 N N N 30.401 17.681 57.634 9.556   2.308  1.127  H1   JLU 45 
JLU H2   H2  H 0 1 N N N 32.597 20.854 50.175 -4.386  0.891  -1.693 H2   JLU 46 
JLU H3   H3  H 0 1 N N N 28.003 21.363 55.822 5.332   0.108  1.811  H3   JLU 47 
JLU H4   H4  H 0 1 N N N 30.592 21.397 55.025 4.507   1.220  -0.808 H4   JLU 48 
JLU H5   H5  H 0 1 N N N 29.911 21.676 52.657 2.318   0.525  -0.763 H5   JLU 49 
JLU H6   H6  H 0 1 N N N 28.350 24.035 53.845 2.380   -0.803 1.888  H6   JLU 50 
JLU H7   H7  H 0 1 N N N 28.512 24.127 51.385 1.487   -1.260 -0.821 H7   JLU 51 
JLU H8   H8  H 0 1 N N N 26.844 23.722 51.914 2.523   -2.619 -0.324 H8   JLU 52 
JLU H9   H9  H 0 1 N N N 32.287 21.686 46.474 -5.482  -0.833 1.627  H9   JLU 53 
JLU H10  H10 H 0 1 N N N 30.138 22.764 46.568 -4.136  -2.428 0.738  H10  JLU 54 
JLU H11  H11 H 0 1 N N N 29.761 21.076 47.054 -4.274  -1.632 -0.852 H11  JLU 55 
JLU H12  H12 H 0 1 N N N 30.243 21.639 49.448 -2.155  -0.830 -0.693 H12  JLU 56 
JLU H13  H13 H 0 1 N N N 30.787 24.404 48.252 -2.049  0.080  2.087  H13  JLU 57 
JLU H14  H14 H 0 1 N N N 31.966 24.896 50.273 -1.431  0.960  -0.586 H14  JLU 58 
JLU H15  H15 H 0 1 N N N 30.361 24.247 50.753 -2.448  2.199  0.187  H15  JLU 59 
JLU H16  H16 H 0 1 N N N 33.041 22.585 49.035 -4.179  1.630  0.829  H16  JLU 60 
JLU H17  H17 H 0 1 N N N 32.845 23.611 47.574 -4.165  0.833  2.424  H17  JLU 61 
JLU H18  H18 H 0 1 N N N 27.755 20.078 52.310 5.365   -2.037 -1.312 H18  JLU 62 
JLU H19  H19 H 0 1 N N N 31.081 16.503 44.225 -10.016 -1.027 2.193  H19  JLU 63 
JLU H20  H20 H 0 1 N N N 30.958 18.212 43.972 -11.272 -0.486 1.217  H20  JLU 64 
JLU H21  H21 H 0 1 N N N 31.359 19.701 45.579 -7.807  -0.726 1.545  H21  JLU 65 
JLU H22  H22 H 0 1 N N N 29.898 14.755 54.535 9.927   -1.289 -2.718 H22  JLU 66 
JLU H23  H23 H 0 1 N N N 28.567 15.245 53.725 11.181  -0.264 -2.270 H23  JLU 67 
JLU H24  H24 H 0 1 N N N 25.662 22.217 48.912 -0.029  -4.922 0.048  H24  JLU 68 
JLU H25  H25 H 0 1 N N N 33.484 21.937 53.614 -0.081  2.634  -1.532 H25  JLU 69 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
JLU N12  C12  SING N N 1  
JLU C12  N13  SING N N 2  
JLU C12  N11  DOUB N N 3  
JLU N13  C14  SING N N 4  
JLU N11  C16  SING N N 5  
JLU C32  C31  SING N N 6  
JLU C32  C33  SING N N 7  
JLU C31  N19  SING N N 8  
JLU C31  C36  SING N N 9  
JLU C14  N19  SING Y N 10 
JLU C14  C15  DOUB Y N 11 
JLU C16  C15  SING N N 12 
JLU C16  O16  DOUB N N 13 
JLU N19  C18  SING Y N 14 
JLU C36  C34  SING N N 15 
JLU C15  N17  SING Y N 16 
JLU C33  O33  SING N N 17 
JLU C33  C34  SING N N 18 
JLU O33  P25  SING N N 19 
JLU C34  C35  SING N N 20 
JLU O25B P25  DOUB N N 21 
JLU O25A P25  SING N N 22 
JLU C18  N17  DOUB Y N 23 
JLU P25  O25  SING N N 24 
JLU C35  O35  SING N N 25 
JLU O35  P35  SING N N 26 
JLU O25  C25  SING N N 27 
JLU C25  C24  SING N N 28 
JLU P35  O35A DOUB N N 29 
JLU P35  O23  SING N N 30 
JLU P35  O35B SING N N 31 
JLU N7   C8   DOUB Y N 32 
JLU N7   C5   SING Y N 33 
JLU C8   N9   SING Y N 34 
JLU O23  C23  SING N N 35 
JLU C24  C23  SING N N 36 
JLU C24  O24  SING N N 37 
JLU C23  C22  SING N N 38 
JLU O24  C21  SING N N 39 
JLU N6   C6   SING N N 40 
JLU C5   C6   DOUB Y N 41 
JLU C5   C4   SING Y N 42 
JLU N9   C21  SING N N 43 
JLU N9   C4   SING Y N 44 
JLU C6   N1   SING Y N 45 
JLU C22  C21  SING N N 46 
JLU C22  F22  SING N N 47 
JLU C4   N3   DOUB Y N 48 
JLU N1   C2   DOUB Y N 49 
JLU N3   C2   SING Y N 50 
JLU C2   H1   SING N N 51 
JLU C18  H2   SING N N 52 
JLU C21  H3   SING N N 53 
JLU C22  H4   SING N N 54 
JLU C23  H5   SING N N 55 
JLU C24  H6   SING N N 56 
JLU C25  H7   SING N N 57 
JLU C25  H8   SING N N 58 
JLU C31  H9   SING N N 59 
JLU C32  H10  SING N N 60 
JLU C32  H11  SING N N 61 
JLU C33  H12  SING N N 62 
JLU C34  H13  SING N N 63 
JLU C35  H14  SING N N 64 
JLU C35  H15  SING N N 65 
JLU C36  H16  SING N N 66 
JLU C36  H17  SING N N 67 
JLU C8   H18  SING N N 68 
JLU N12  H19  SING N N 69 
JLU N12  H20  SING N N 70 
JLU N13  H21  SING N N 71 
JLU N6   H22  SING N N 72 
JLU N6   H23  SING N N 73 
JLU O25A H24  SING N N 74 
JLU O35B H25  SING N N 75 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
JLU InChI            InChI                1.06  "InChI=1S/C21H25FN10O10P2/c22-12-15-11(40-20(12)32-7-27-13-16(23)25-5-26-17(13)32)4-39-43(34,35)41-10-2-9(1-8(10)3-38-44(36,37)42-15)31-6-28-14-18(31)29-21(24)30-19(14)33/h5-12,15,20H,1-4H2,(H,34,35)(H,36,37)(H2,23,25,26)(H3,24,29,30,33)/t8-,9-,10+,11-,12-,15-,20-/m1/s1" 
JLU InChIKey         InChI                1.06  MBBQTFXWIHOYHK-HRPBTLETSA-N                                                                                                                                                                                                                                                     
JLU SMILES_CANONICAL CACTVS               3.385 "NC1=NC(=O)c2ncn([C@@H]3C[C@@H]4CO[P](O)(=O)O[C@H]5[C@@H](F)[C@@H](O[C@@H]5CO[P](O)(=O)O[C@H]4C3)n6cnc7c(N)ncnc67)c2N1"                                                                                                                                                         
JLU SMILES           CACTVS               3.385 "NC1=NC(=O)c2ncn([CH]3C[CH]4CO[P](O)(=O)O[CH]5[CH](F)[CH](O[CH]5CO[P](O)(=O)O[CH]4C3)n6cnc7c(N)ncnc67)c2N1"                                                                                                                                                                     
JLU SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@H]4[C@H](O3)COP(=O)(O[C@H]5C[C@@H](C[C@@H]5COP(=O)(O4)O)n6cnc7c6NC(=NC7=O)N)O)F)N"                                                                                                                                                           
JLU SMILES           "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)C3C(C4C(O3)COP(=O)(OC5CC(CC5COP(=O)(O4)O)n6cnc7c6NC(=NC7=O)N)O)F)N"                                                                                                                                                                                          
# 
_pdbx_chem_comp_identifier.comp_id           JLU 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "9-[(1~{S},6~{R},8~{R},9~{R},10~{R},15~{R},17~{R})-8-(6-aminopurin-9-yl)-9-fluoranyl-3,12-bis(oxidanyl)-3,12-bis(oxidanylidene)-2,4,7,11,13-pentaoxa-3$l^{5},12$l^{5}-diphosphatricyclo[13.3.0.0^{6,10}]octadecan-17-yl]-2-azanyl-3~{H}-purin-6-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
JLU "Create component"  2022-05-05 PDBE 
JLU "Modify descriptor" 2022-08-22 RCSB 
JLU "Initial release"   2023-10-25 RCSB 
# 
