data_QRT
#

_chem_comp.id                                   QRT
_chem_comp.name                                 "[(2~{R},3~{S},4~{R},5~{R})-5-[6-aminocarbonyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C10 H14 N3 O10 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-07-31
_chem_comp.pdbx_modified_date                   2022-02-18
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       367.206
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    QRT
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6ZX2
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
QRT  P      P1   P  0  1  N  N  N  12.258  13.348  42.290  -4.622   0.791  -0.407  P      QRT   1  
QRT  O1P    O1   O  0  1  N  N  N  10.965  13.225  43.051  -4.481   2.074   0.556  O1P    QRT   2  
QRT  O2P    O2   O  0  1  N  N  N  12.580  14.803  41.981  -5.622  -0.142   0.159  O2P    QRT   3  
QRT  O3P    O3   O  0  1  N  N  N  13.417  12.613  42.927  -5.098   1.267  -1.869  O3P    QRT   4  
QRT  "O5'"  O4   O  0  1  N  N  N  11.882  12.659  40.883  -3.199   0.047  -0.521  "O5'"  QRT   5  
QRT  "C5'"  C1   C  0  1  N  N  N  12.886  12.402  39.920  -2.558  -0.583   0.590  "C5'"  QRT   6  
QRT  "C4'"  C2   C  0  1  N  N  R  12.158  11.873  38.689  -1.229  -1.189   0.136  "C4'"  QRT   7  
QRT  "O4'"  O5   O  0  1  N  N  N  13.082  11.764  37.597  -0.280  -0.146  -0.175  "O4'"  QRT   8  
QRT  "C1'"  C3   C  0  1  N  N  R  13.281  10.373  37.241   1.017  -0.776  -0.099  "C1'"  QRT   9  
QRT  C4     C4   C  0  1  N  N  N  17.380   9.493  36.614   3.969   2.146   0.519  C4     QRT  10  
QRT  N3     N1   N  0  1  N  N  N  16.917   9.937  37.809   2.869   2.078   1.298  N3     QRT  11  
QRT  C2     C5   C  0  1  N  N  N  15.641  10.219  38.049   1.938   1.133   1.080  C2     QRT  12  
QRT  N1     N2   N  0  1  N  N  N  14.727  10.134  37.029   2.063   0.231   0.092  N1     QRT  13  
QRT  C6     C6   C  0  1  N  N  N  15.195   9.711  35.756   3.158   0.238  -0.745  C6     QRT  14  
QRT  C5     C7   C  0  1  N  N  N  16.516   9.375  35.550   4.128   1.172  -0.568  C5     QRT  15  
QRT  "C2'"  C8   C  0  1  N  N  R  12.602   9.579  38.344   0.933  -1.705   1.132  "C2'"  QRT  16  
QRT  "C3'"  C9   C  0  1  N  N  S  11.536  10.507  38.863  -0.578  -1.983   1.291  "C3'"  QRT  17  
QRT  "O3'"  O6   O  0  1  N  N  N  10.299  10.386  38.107  -0.848  -3.380   1.152  "O3'"  QRT  18  
QRT  "O2'"  O7   O  0  1  N  N  N  12.002   8.390  37.828   1.644  -2.921   0.891  "O2'"  QRT  19  
QRT  O4     O8   O  0  1  N  N  N  18.628   9.291  36.504   4.811   3.003   0.710  O4     QRT  20  
QRT  O2     O9   O  0  1  N  N  N  15.305  10.676  39.147   0.957   1.093   1.797  O2     QRT  21  
QRT  C1     C10  C  0  1  N  N  N  14.320   9.884  34.596   3.275  -0.766  -1.831  C1     QRT  22  
QRT  N10    N3   N  0  1  N  N  N  14.083   8.771  33.937   2.852  -0.467  -3.075  N10    QRT  23  
QRT  O11    O10  O  0  1  N  N  N  13.938  11.009  34.265   3.753  -1.859  -1.598  O11    QRT  24  
QRT  H1     H1   H  0  1  N  N  N  10.597  14.089  43.192  -3.841   2.730   0.246  H1     QRT  25  
QRT  H2     H2   H  0  1  N  N  N  14.154  13.205  43.022  -5.950   1.724  -1.876  H2     QRT  26  
QRT  H3     H3   H  0  1  N  N  N  13.595  11.651  40.298  -2.373   0.156   1.370  H3     QRT  27  
QRT  H4     H4   H  0  1  N  N  N  13.428  13.328  39.676  -3.202  -1.370   0.982  H4     QRT  28  
QRT  H5     H5   H  0  1  N  N  N  11.363  12.586  38.426  -1.383  -1.835  -0.729  H5     QRT  29  
QRT  H6     H6   H  0  1  N  N  N  12.752  10.167  36.299   1.209  -1.357  -1.001  H6     QRT  30  
QRT  H7     H7   H  0  1  N  N  N  17.574  10.059  38.553   2.750   2.714   2.020  H7     QRT  31  
QRT  H8     H8   H  0  1  N  N  N  16.861   9.031  34.586   4.995   1.197  -1.211  H8     QRT  32  
QRT  H9     H9   H  0  1  N  N  N  13.325   9.349  39.141   1.324  -1.203   2.017  H9     QRT  33  
QRT  H10    H10  H  0  1  N  N  N  11.358  10.312  39.931  -0.935  -1.618   2.254  H10    QRT  34  
QRT  H11    H11  H  0  1  N  N  N   9.651  10.984  38.461  -0.462  -3.926   1.851  H11    QRT  35  
QRT  H12    H12  H  0  1  N  N  N  11.585   7.912  38.536   1.624  -3.542   1.632  H12    QRT  36  
QRT  H13    H13  H  0  1  N  N  N  13.551   8.795  33.090   2.470   0.405  -3.260  H13    QRT  37  
QRT  H14    H14  H  0  1  N  N  N  14.434   7.901  34.283   2.929  -1.124  -3.784  H14    QRT  38  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
QRT  N10    C1     SING  N  N   1  
QRT  O11    C1     DOUB  N  N   2  
QRT  C1     C6     SING  N  N   3  
QRT  C5     C6     DOUB  N  N   4  
QRT  C5     C4     SING  N  N   5  
QRT  C6     N1     SING  N  N   6  
QRT  O4     C4     DOUB  N  N   7  
QRT  C4     N3     SING  N  N   8  
QRT  N1     "C1'"  SING  N  N   9  
QRT  N1     C2     SING  N  N  10  
QRT  "C1'"  "O4'"  SING  N  N  11  
QRT  "C1'"  "C2'"  SING  N  N  12  
QRT  "O4'"  "C4'"  SING  N  N  13  
QRT  N3     C2     SING  N  N  14  
QRT  "O2'"  "C2'"  SING  N  N  15  
QRT  C2     O2     DOUB  N  N  16  
QRT  "O3'"  "C3'"  SING  N  N  17  
QRT  "C2'"  "C3'"  SING  N  N  18  
QRT  "C4'"  "C3'"  SING  N  N  19  
QRT  "C4'"  "C5'"  SING  N  N  20  
QRT  "C5'"  "O5'"  SING  N  N  21  
QRT  "O5'"  P      SING  N  N  22  
QRT  O2P    P      DOUB  N  N  23  
QRT  P      O3P    SING  N  N  24  
QRT  P      O1P    SING  N  N  25  
QRT  O1P    H1     SING  N  N  26  
QRT  O3P    H2     SING  N  N  27  
QRT  "C5'"  H3     SING  N  N  28  
QRT  "C5'"  H4     SING  N  N  29  
QRT  "C4'"  H5     SING  N  N  30  
QRT  "C1'"  H6     SING  N  N  31  
QRT  N3     H7     SING  N  N  32  
QRT  C5     H8     SING  N  N  33  
QRT  "C2'"  H9     SING  N  N  34  
QRT  "C3'"  H10    SING  N  N  35  
QRT  "O3'"  H11    SING  N  N  36  
QRT  "O2'"  H12    SING  N  N  37  
QRT  N10    H13    SING  N  N  38  
QRT  N10    H14    SING  N  N  39  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
QRT  InChI             InChI                 1.03   "InChI=1S/C10H14N3O10P/c11-8(17)3-1-5(14)12-10(18)13(3)9-7(16)6(15)4(23-9)2-22-24(19,20)21/h1,4,6-7,9,15-16H,2H2,(H2,11,17)(H,12,14,18)(H2,19,20,21)/t4-,6-,7-,9-/m1/s1"  
QRT  InChIKey          InChI                 1.03   NQGAULDDRYFBMS-FJGDRVTGSA-N  
QRT  SMILES_CANONICAL  CACTVS                3.385  "NC(=O)C1=CC(=O)NC(=O)N1[C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]2O"  
QRT  SMILES            CACTVS                3.385  "NC(=O)C1=CC(=O)NC(=O)N1[CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH]2O"  
QRT  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C1=C(N(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)O)C(=O)N"  
QRT  SMILES            "OpenEye OEToolkits"  2.0.7  "C1=C(N(C(=O)NC1=O)C2C(C(C(O2)COP(=O)(O)O)O)O)C(=O)N"  
#
_pdbx_chem_comp_identifier.comp_id          QRT
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "[(2~{R},3~{S},4~{R},5~{R})-5-[6-aminocarbonyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
QRT  "Create component"  2020-07-31  PDBE  
QRT  "Initial release"   2022-02-23  RCSB  
##
