data_9ES
# 
_chem_comp.id                                    9ES 
_chem_comp.name                                  "N-{2-[(6-{[(2,6-dichloro-3,5-dimethoxyphenyl)carbamoyl](methyl)amino}pyrimidin-4-yl)amino]-5-(4-ethylpiperazin-1-yl)phenyl}propanamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C29 H36 Cl2 N8 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-05-01 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        631.553 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     9ES 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5VND 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
9ES C2  C1  C  0 1 N N N N N N 69.521 -29.149 -29.559 -8.216  -3.439 -0.083 C2  9ES 1  
9ES C3  C2  C  0 1 N N N N N N 70.462 -29.580 -28.426 -6.883  -2.716 0.123  C3  9ES 2  
9ES C4  C3  C  0 1 N N N N N N 70.386 -27.084 -28.051 -8.068  -0.642 0.515  C4  9ES 3  
9ES C5  C4  C  0 1 N N N N N N 68.868 -27.299 -28.033 -9.401  -1.365 0.309  C5  9ES 4  
9ES C6  C5  C  0 1 Y N N N N N 71.961 -28.544 -26.720 -5.805  -0.632 -0.170 C6  9ES 5  
9ES C9  C6  C  0 1 Y N N N N N 73.852 -28.883 -24.634 -3.380  0.700  0.033  C9  9ES 6  
9ES C10 C7  C  0 1 Y N N N N N 75.454 -27.838 -23.189 -0.965  0.663  0.068  C10 9ES 7  
9ES C11 C8  C  0 1 Y N N N N N 75.093 -26.502 -23.434 0.252   1.299  0.293  C11 9ES 8  
9ES C12 C9  C  0 1 Y N N N N N 75.745 -25.506 -22.736 1.416   0.543  0.209  C12 9ES 9  
9ES C13 C10 C  0 1 Y N N N N N 76.964 -27.222 -21.598 0.154   -1.319 -0.288 C13 9ES 10 
9ES C14 C11 C  0 1 N N N N N N 74.569 -23.783 -23.916 2.739   2.532  0.851  C14 9ES 11 
9ES C21 C12 C  0 1 Y N N N N N 77.255 -22.168 -17.554 7.432   -1.190 -1.236 C21 9ES 12 
9ES C22 C13 C  0 1 N N N N N N 77.068 -21.907 -15.122 8.765   -2.628 -2.581 C22 9ES 13 
9ES O3  O1  O  0 1 N N N N N N 75.573 -30.722 -28.161 -6.571  3.064  -0.258 O3  9ES 14 
9ES C25 C14 C  0 1 N N N N N N 75.973 -30.615 -27.025 -5.532  3.514  -0.694 C25 9ES 15 
9ES C26 C15 C  0 1 N N N N N N 77.386 -31.017 -26.690 -5.471  4.941  -1.173 C26 9ES 16 
9ES C27 C16 C  0 1 N N N N N N 77.995 -30.188 -25.556 -6.843  5.596  -1.003 C27 9ES 17 
9ES N7  N1  N  0 1 N N N N N N 75.283 -30.160 -26.008 -4.432  2.737  -0.749 N7  9ES 18 
9ES C24 C17 C  0 1 Y N N N N N 74.096 -29.500 -25.959 -4.515  1.380  -0.408 C24 9ES 19 
9ES C28 C18 C  0 1 Y N N N N N 73.130 -29.316 -26.955 -5.726  0.712  -0.508 C28 9ES 20 
9ES N1  N2  N  0 1 N N N N N N 70.969 -28.386 -27.724 -7.024  -1.309 -0.277 N1  9ES 21 
9ES N   N3  N  0 1 N N N N N N 68.426 -28.261 -29.081 -9.259  -2.773 0.709  N   9ES 22 
9ES C1  C19 C  0 1 N N N N N N 67.781 -27.568 -30.219 -10.540 -3.483 0.597  C1  9ES 23 
9ES C   C20 C  0 1 N N N N N N 66.307 -27.327 -29.951 -11.528 -2.916 1.618  C   9ES 24 
9ES C8  C21 C  0 1 Y N N N N N 72.689 -28.130 -24.460 -3.465  -0.642 0.370  C8  9ES 25 
9ES C7  C22 C  0 1 Y N N N N N 71.744 -27.971 -25.461 -4.672  -1.307 0.268  C7  9ES 26 
9ES N2  N4  N  0 1 N N N N N N 74.887 -28.911 -23.726 -2.154  1.373  0.134  N2  9ES 27 
9ES N4  N5  N  0 1 Y N N N N N 76.405 -28.182 -22.298 -0.971  -0.638 -0.218 N4  9ES 28 
9ES N3  N6  N  0 1 Y N N N N N 76.659 -25.949 -21.845 1.326   -0.753 -0.081 N3  9ES 29 
9ES N5  N7  N  0 1 N N N N N N 75.489 -24.107 -22.843 2.657   1.133  0.426  N5  9ES 30 
9ES C15 C23 C  0 1 N N N N N N 76.053 -23.192 -21.953 3.784   0.416  0.243  C15 9ES 31 
9ES O   O2  O  0 1 N N N N N N 75.861 -21.997 -22.058 3.716   -0.745 -0.110 O   9ES 32 
9ES N6  N8  N  0 1 N N N N N N 76.801 -23.700 -20.948 4.987   0.988  0.453  N6  9ES 33 
9ES C16 C24 C  0 1 Y N N N N N 77.396 -23.002 -19.961 6.159   0.268  0.190  C16 9ES 34 
9ES C23 C25 C  0 1 Y N N N N N 76.817 -22.972 -18.662 6.270   -0.478 -0.976 C23 9ES 35 
9ES CL1 CL1 CL 0 0 N N N N N N 75.558 -24.121 -18.364 4.955   -0.518 -2.109 CL1 9ES 36 
9ES O2  O3  O  0 1 N N N N N N 76.617 -22.382 -16.371 7.541   -1.919 -2.378 O2  9ES 37 
9ES C20 C26 C  0 1 Y N N N N N 78.264 -21.278 -17.777 8.484   -1.153 -0.334 C20 9ES 38 
9ES C18 C27 C  0 1 Y N N N N N 78.849 -21.170 -19.034 8.375   -0.409 0.831  C18 9ES 39 
9ES C17 C28 C  0 1 Y N N N N N 78.422 -21.999 -20.121 7.212   0.300  1.095  C17 9ES 40 
9ES CL  CL2 CL 0 0 N N N N N N 79.249 -21.876 -21.657 7.075   1.232  2.553  CL  9ES 41 
9ES O1  O4  O  0 1 N N N N N N 79.862 -20.299 -19.316 9.407   -0.374 1.715  O1  9ES 42 
9ES C19 C29 C  0 1 N N N N N N 80.429 -19.436 -18.315 10.574  -1.128 1.379  C19 9ES 43 
9ES H1  H1  H  0 1 N N N N N N 69.075 -30.048 -30.009 -8.486  -3.410 -1.138 H1  9ES 44 
9ES H2  H2  H  0 1 N N N N N N 70.106 -28.610 -30.319 -8.121  -4.476 0.240  H2  9ES 45 
9ES H3  H3  H  0 1 N N N N N N 69.913 -30.217 -27.716 -6.599  -2.769 1.174  H3  9ES 46 
9ES H4  H4  H  0 1 N N N N N N 71.307 -30.144 -28.847 -6.113  -3.191 -0.486 H4  9ES 47 
9ES H5  H5  H  0 1 N N N N N N 70.716 -26.754 -29.047 -8.163  0.394  0.192  H5  9ES 48 
9ES H6  H6  H  0 1 N N N N N N 70.677 -26.333 -27.301 -7.797  -0.672 1.571  H6  9ES 49 
9ES H7  H7  H  0 1 N N N N N N 68.371 -26.333 -28.206 -10.170 -0.890 0.918  H7  9ES 50 
9ES H8  H8  H  0 1 N N N N N N 68.577 -27.690 -27.047 -9.685  -1.312 -0.742 H8  9ES 51 
9ES H9  H9  H  0 1 N N N N N N 74.323 -26.260 -24.152 0.291   2.353  0.527  H9  9ES 52 
9ES H10 H10 H  0 1 N N N N N N 77.673 -27.465 -20.820 0.116   -2.373 -0.522 H10 9ES 53 
9ES H11 H11 H  0 1 N N N N N N 74.411 -22.695 -23.949 2.730   2.582  1.940  H11 9ES 54 
9ES H12 H12 H  0 1 N N N N N N 74.990 -24.121 -24.874 3.663   2.973  0.476  H12 9ES 55 
9ES H13 H13 H  0 1 N N N N N N 73.608 -24.287 -23.739 1.886   3.083  0.455  H13 9ES 56 
9ES H14 H14 H  0 1 N N N N N N 76.367 -22.222 -14.335 9.594   -1.921 -2.605 H14 9ES 57 
9ES H15 H15 H  0 1 N N N N N N 78.065 -22.320 -14.911 8.914   -3.336 -1.766 H15 9ES 58 
9ES H16 H16 H  0 1 N N N N N N 77.123 -20.809 -15.146 8.720   -3.167 -3.527 H16 9ES 59 
9ES H17 H17 H  0 1 N N N N N N 77.387 -32.075 -26.389 -4.732  5.489  -0.589 H17 9ES 60 
9ES H18 H18 H  0 1 N N N N N N 78.008 -30.891 -27.588 -5.188  4.959  -2.226 H18 9ES 61 
9ES H19 H19 H  0 1 N N N N N N 79.022 -30.530 -25.362 -7.126  5.578  0.050  H19 9ES 62 
9ES H20 H20 H  0 1 N N N N N N 78.011 -29.127 -25.845 -6.799  6.628  -1.350 H20 9ES 63 
9ES H21 H21 H  0 1 N N N N N N 77.389 -30.311 -24.646 -7.582  5.048  -1.587 H21 9ES 64 
9ES H22 H22 H  0 1 N N N N N N 75.701 -30.327 -25.115 -3.583  3.117  -1.024 H22 9ES 65 
9ES H23 H23 H  0 1 N N N N N N 73.277 -29.771 -27.923 -6.606  1.236  -0.849 H23 9ES 66 
9ES H25 H25 H  0 1 N N N N N N 67.885 -28.188 -31.122 -10.941 -3.353 -0.408 H25 9ES 67 
9ES H26 H26 H  0 1 N N N N N N 68.279 -26.601 -30.379 -10.384 -4.544 0.792  H26 9ES 68 
9ES H27 H27 H  0 1 N N N N N N 65.857 -26.812 -30.812 -11.127 -3.046 2.623  H27 9ES 69 
9ES H28 H28 H  0 1 N N N N N N 65.801 -28.291 -29.794 -11.684 -1.855 1.423  H28 9ES 70 
9ES H29 H29 H  0 1 N N N N N N 66.195 -26.704 -29.052 -12.479 -3.444 1.535  H29 9ES 71 
9ES H30 H30 H  0 1 N N N N N N 72.519 -27.652 -23.507 -2.586  -1.169 0.710  H30 9ES 72 
9ES H31 H31 H  0 1 N N N N N N 70.843 -27.407 -25.271 -4.736  -2.352 0.531  H31 9ES 73 
9ES H32 H32 H  0 1 N N N N N N 75.237 -29.806 -23.451 -2.138  2.336  0.251  H32 9ES 74 
9ES H33 H33 H  0 1 N N N N N N 76.925 -24.692 -20.936 5.040   1.897  0.786  H33 9ES 75 
9ES H34 H34 H  0 1 N N N N N N 78.612 -20.651 -16.970 9.390   -1.704 -0.539 H34 9ES 76 
9ES H35 H35 H  0 1 N N N N N N 81.225 -18.825 -18.765 11.319  -1.014 2.167  H35 9ES 77 
9ES H36 H36 H  0 1 N N N N N N 79.645 -18.777 -17.912 10.310  -2.180 1.278  H36 9ES 78 
9ES H37 H37 H  0 1 N N N N N N 80.850 -20.045 -17.501 10.983  -0.764 0.437  H37 9ES 79 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
9ES C1  C   SING N N 1  
9ES C1  N   SING N N 2  
9ES C2  N   SING N N 3  
9ES C2  C3  SING N N 4  
9ES N   C5  SING N N 5  
9ES C3  N1  SING N N 6  
9ES O3  C25 DOUB N N 7  
9ES C4  C5  SING N N 8  
9ES C4  N1  SING N N 9  
9ES N1  C6  SING N N 10 
9ES C25 C26 SING N N 11 
9ES C25 N7  SING N N 12 
9ES C28 C6  DOUB Y N 13 
9ES C28 C24 SING Y N 14 
9ES C6  C7  SING Y N 15 
9ES C26 C27 SING N N 16 
9ES N7  C24 SING N N 17 
9ES C24 C9  DOUB Y N 18 
9ES C7  C8  DOUB Y N 19 
9ES C9  C8  SING Y N 20 
9ES C9  N2  SING N N 21 
9ES C14 N5  SING N N 22 
9ES N2  C10 SING N N 23 
9ES C11 C10 DOUB Y N 24 
9ES C11 C12 SING Y N 25 
9ES C10 N4  SING Y N 26 
9ES N5  C12 SING N N 27 
9ES N5  C15 SING N N 28 
9ES C12 N3  DOUB Y N 29 
9ES N4  C13 DOUB Y N 30 
9ES O   C15 DOUB N N 31 
9ES C15 N6  SING N N 32 
9ES N3  C13 SING Y N 33 
9ES CL  C17 SING N N 34 
9ES N6  C16 SING N N 35 
9ES C17 C16 DOUB Y N 36 
9ES C17 C18 SING Y N 37 
9ES C16 C23 SING Y N 38 
9ES O1  C18 SING N N 39 
9ES O1  C19 SING N N 40 
9ES C18 C20 DOUB Y N 41 
9ES C23 CL1 SING N N 42 
9ES C23 C21 DOUB Y N 43 
9ES C20 C21 SING Y N 44 
9ES C21 O2  SING N N 45 
9ES O2  C22 SING N N 46 
9ES C2  H1  SING N N 47 
9ES C2  H2  SING N N 48 
9ES C3  H3  SING N N 49 
9ES C3  H4  SING N N 50 
9ES C4  H5  SING N N 51 
9ES C4  H6  SING N N 52 
9ES C5  H7  SING N N 53 
9ES C5  H8  SING N N 54 
9ES C11 H9  SING N N 55 
9ES C13 H10 SING N N 56 
9ES C14 H11 SING N N 57 
9ES C14 H12 SING N N 58 
9ES C14 H13 SING N N 59 
9ES C22 H14 SING N N 60 
9ES C22 H15 SING N N 61 
9ES C22 H16 SING N N 62 
9ES C26 H17 SING N N 63 
9ES C26 H18 SING N N 64 
9ES C27 H19 SING N N 65 
9ES C27 H20 SING N N 66 
9ES C27 H21 SING N N 67 
9ES N7  H22 SING N N 68 
9ES C28 H23 SING N N 69 
9ES C1  H25 SING N N 70 
9ES C1  H26 SING N N 71 
9ES C   H27 SING N N 72 
9ES C   H28 SING N N 73 
9ES C   H29 SING N N 74 
9ES C8  H30 SING N N 75 
9ES C7  H31 SING N N 76 
9ES N2  H32 SING N N 77 
9ES N6  H33 SING N N 78 
9ES C20 H34 SING N N 79 
9ES C19 H35 SING N N 80 
9ES C19 H36 SING N N 81 
9ES C19 H37 SING N N 82 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
9ES SMILES           ACDLabs              12.01 "C1N(CCN(C1)c4ccc(Nc2ncnc(c2)N(C)C(Nc3c(c(OC)cc(c3Cl)OC)Cl)=O)c(NC(=O)CC)c4)CC"                                                                                                                                            
9ES InChI            InChI                1.03  "InChI=1S/C29H36Cl2N8O4/c1-6-25(40)35-20-14-18(39-12-10-38(7-2)11-13-39)8-9-19(20)34-23-16-24(33-17-32-23)37(3)29(41)36-28-26(30)21(42-4)15-22(43-5)27(28)31/h8-9,14-17H,6-7,10-13H2,1-5H3,(H,35,40)(H,36,41)(H,32,33,34)" 
9ES InChIKey         InChI                1.03  HGJBVDYLOQVDMM-UHFFFAOYSA-N                                                                                                                                                                                                
9ES SMILES_CANONICAL CACTVS               3.385 "CCN1CCN(CC1)c2ccc(Nc3cc(ncn3)N(C)C(=O)Nc4c(Cl)c(OC)cc(OC)c4Cl)c(NC(=O)CC)c2"                                                                                                                                              
9ES SMILES           CACTVS               3.385 "CCN1CCN(CC1)c2ccc(Nc3cc(ncn3)N(C)C(=O)Nc4c(Cl)c(OC)cc(OC)c4Cl)c(NC(=O)CC)c2"                                                                                                                                              
9ES SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CCC(=O)Nc1cc(ccc1Nc2cc(ncn2)N(C)C(=O)Nc3c(c(cc(c3Cl)OC)OC)Cl)N4CCN(CC4)CC"                                                                                                                                                
9ES SMILES           "OpenEye OEToolkits" 2.0.6 "CCC(=O)Nc1cc(ccc1Nc2cc(ncn2)N(C)C(=O)Nc3c(c(cc(c3Cl)OC)OC)Cl)N4CCN(CC4)CC"                                                                                                                                                
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
9ES "SYSTEMATIC NAME" ACDLabs              12.01 "N-{2-[(6-{[(2,6-dichloro-3,5-dimethoxyphenyl)carbamoyl](methyl)amino}pyrimidin-4-yl)amino]-5-(4-ethylpiperazin-1-yl)phenyl}propanamide"         
9ES "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "~{N}-[2-[[6-[[2,6-bis(chloranyl)-3,5-dimethoxy-phenyl]carbamoyl-methyl-amino]pyrimidin-4-yl]amino]-5-(4-ethylpiperazin-1-yl)phenyl]propanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
9ES "Create component" 2017-05-01 RCSB 
9ES "Initial release"  2017-05-24 RCSB 
9ES "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            9ES 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C27 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
