data_39S
# 
_chem_comp.id                                    39S 
_chem_comp.name                                  "N-[4-({[(6S)-2-amino-4-oxo-3,4,5,6,7,8-hexahydropteridin-6-yl]methyl}amino)benzoyl]-L-gamma-glutamyl-L-gamma-glutamyl-L-glutamic acid" 
_chem_comp.type                                  peptide-like 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C29 H37 N9 O12" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2014-07-11 
_chem_comp.pdbx_modified_date                    2015-01-09 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        703.657 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     39S 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4QQU 
_chem_comp.pdbx_subcomponent_list                "40Q GGL GGL GLU" 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
39S N7  N7  N 0 1 N N N 21.546 -34.604 -24.705 11.048  0.852  1.145  N7  40Q 1  
39S C23 C23 C 0 1 N N N 21.375 -35.917 -24.407 11.505  -0.191 0.486  C23 40Q 2  
39S N6  N6  N 0 1 N N N 20.399 -36.261 -23.515 12.461  -0.985 1.068  N6  40Q 3  
39S N5  N5  N 0 1 N N N 22.125 -36.899 -24.949 11.052  -0.503 -0.759 N5  40Q 4  
39S C22 C22 C 0 1 N N N 23.093 -36.651 -25.832 10.112  0.266  -1.352 C22 40Q 5  
39S O5  O5  O 0 1 N N N 23.775 -37.613 -26.297 9.699   -0.004 -2.469 O5  40Q 6  
39S C21 C21 C 0 1 N N N 23.332 -35.231 -26.197 9.623   1.377  -0.657 C21 40Q 7  
39S N8  N8  N 0 1 N N N 24.327 -34.810 -27.088 8.645   2.217  -1.233 N8  40Q 8  
39S C18 C18 C 0 1 N N S 23.987 -33.578 -27.817 7.912   3.144  -0.356 C18 40Q 9  
39S C19 C19 C 0 1 N N N 23.670 -32.507 -26.801 8.925   3.805  0.591  C19 40Q 10 
39S N4  N4  N 0 1 N N N 22.664 -32.951 -25.861 9.640   2.745  1.316  N4  40Q 11 
39S C20 C20 C 0 1 N N N 22.488 -34.234 -25.563 10.116  1.650  0.612  C20 40Q 12 
39S C17 C17 C 0 1 N N N 22.908 -33.716 -28.894 6.871   2.373  0.458  C17 40Q 13 
39S N3  N3  N 0 1 N N N 21.675 -34.383 -28.454 6.000   1.621  -0.450 N3  40Q 14 
39S C13 C13 C 0 1 Y N N 20.374 -38.225 -29.476 2.921   -0.721 1.084  C13 40Q 15 
39S C26 C26 C 0 1 Y N N 21.631 -37.795 -29.819 3.126   -0.650 -0.298 C26 40Q 16 
39S C25 C25 C 0 1 Y N N 22.076 -36.540 -29.468 4.145   0.126  -0.802 C25 40Q 17 
39S C16 C16 C 0 1 Y N N 21.275 -35.652 -28.784 4.971   0.839  0.062  C16 40Q 18 
39S C15 C15 C 0 1 Y N N 20.005 -36.074 -28.468 4.770   0.770  1.438  C15 40Q 19 
39S C14 C14 C 0 1 Y N N 19.560 -37.340 -28.800 3.753   -0.003 1.948  C14 40Q 20 
39S C12 C12 C 0 1 N N N 19.955 -39.613 -29.885 1.826   -1.546 1.627  C12 40Q 21 
39S O4  O4  O 0 1 N N N 20.787 -40.313 -30.472 1.645   -1.603 2.828  O4  40Q 22 
39S N2  N2  N 0 1 N N N 18.711 -40.054 -29.698 1.025   -2.238 0.792  N   GGL 23 
39S C11 C11 C 0 1 N N S 18.265 -41.257 -30.376 -0.063  -3.057 1.331  CA  GGL 24 
39S C27 C27 C 0 1 N N N 17.127 -40.856 -31.256 0.471   -4.415 1.710  C   GGL 25 
39S O7  O7  O 0 1 N N N 17.296 -40.905 -32.465 1.641   -4.671 1.546  O   GGL 26 
39S C10 C10 C 0 1 N N N 17.863 -42.423 -29.476 -1.155  -3.217 0.272  CB  GGL 27 
39S C9  C9  C 0 1 N N N 18.290 -42.267 -28.021 -1.784  -1.853 -0.022 CG  GGL 28 
39S C8  C8  C 0 1 N N N 17.610 -43.307 -27.150 -2.859  -2.010 -1.066 CD  GGL 29 
39S O3  O3  O 0 1 N N N 17.062 -42.905 -26.130 -3.100  -3.105 -1.529 OE1 GGL 30 
39S O6  O6  O 0 1 N N N 15.955 -40.452 -30.719 -0.352  -5.339 2.229  OXT GGL 31 
39S N1  N1  N 0 1 N N N 17.645 -44.585 -27.598 -3.554  -0.934 -1.484 N   GGL 32 
39S C7  C7  C 0 1 N N S 16.877 -45.714 -27.063 -4.600  -1.086 -2.498 CA  GGL 33 
39S C28 C28 C 0 1 N N N 17.650 -47.037 -26.952 -3.980  -1.039 -3.871 C   GGL 34 
39S O8  O8  O 0 1 N N N 18.816 -47.212 -27.567 -2.786  -0.893 -3.989 O   GGL 35 
39S C6  C6  C 0 1 N N N 15.612 -45.813 -27.953 -5.616  0.050  -2.358 CB  GGL 36 
39S C5  C5  C 0 1 N N N 15.356 -47.181 -28.602 -6.335  -0.072 -1.014 CG  GGL 37 
39S C4  C4  C 0 1 N N N 14.079 -47.264 -29.416 -7.336  1.046  -0.876 CD  GGL 38 
39S O2  O2  O 0 1 N N N 13.700 -46.342 -30.086 -7.461  1.861  -1.766 OE1 GGL 39 
39S O9  O9  O 0 1 N N N 17.262 -48.022 -26.319 -4.753  -1.159 -4.962 OXT GGL 40 
39S N   N   N 0 1 N N N 13.388 -48.391 -29.327 -8.091  1.141  0.236  N   GLU 41 
39S C   C   C 0 1 N N S 12.073 -48.586 -29.922 -9.064  2.229  0.370  CA  GLU 42 
39S C29 C29 C 0 1 N N N 10.958 -47.797 -29.263 -8.374  3.456  0.908  C   GLU 43 
39S O11 O11 O 0 1 N N N 9.908  -47.576 -29.866 -7.192  3.425  1.154  O   GLU 44 
39S C1  C1  C 0 1 N N N 11.708 -50.071 -29.855 -10.174 1.804  1.333  CB  GLU 45 
39S C2  C2  C 0 1 N N N 12.737 -50.932 -30.575 -10.955 0.636  0.729  CG  GLU 46 
39S C3  C3  C 0 1 N N N 12.838 -50.455 -31.994 -12.048 0.217  1.677  CD  GLU 47 
39S O   O   O 0 1 N N N 11.859 -50.578 -32.725 -12.189 0.795  2.729  OE1 GLU 48 
39S O1  O1  O 0 1 N N N 13.986 -49.892 -32.415 -12.866 -0.797 1.354  OE2 GLU 49 
39S O10 O10 O 0 1 N N N 11.084 -47.329 -28.018 -9.074  4.583  1.114  OXT GLU 50 
39S H1  H1  H 0 1 N N N 19.830 -35.552 -23.098 12.792  -0.773 1.955  H1  40Q 51 
39S H2  H2  H 0 1 N N N 20.253 -37.222 -23.279 12.806  -1.757 0.593  H2  40Q 52 
39S H4  H4  H 0 1 N N N 24.482 -35.539 -27.755 8.460   2.183  -2.184 H4  40Q 53 
39S H6  H6  H 0 1 N N N 24.900 -33.253 -28.337 7.418   3.907  -0.957 H6  40Q 54 
39S H7  H7  H 0 1 N N N 24.588 -32.254 -26.250 9.634   4.398  0.013  H7  40Q 55 
39S H8  H8  H 0 1 N N N 23.300 -31.614 -27.326 8.401   4.446  1.300  H8  40Q 56 
39S H9  H9  H 0 1 N N N 22.867 -32.490 -24.997 9.777   2.811  2.274  H9  40Q 57 
39S H10 H10 H 0 1 N N N 23.330 -34.295 -29.728 7.376   1.681  1.132  H10 40Q 58 
39S H11 H11 H 0 1 N N N 22.644 -32.707 -29.244 6.272   3.073  1.039  H11 40Q 59 
39S H12 H12 H 0 1 N N N 21.717 -34.375 -27.455 6.142   1.670  -1.408 H12 40Q 60 
39S H13 H13 H 0 1 N N N 22.283 -38.453 -30.374 2.485   -1.203 -0.968 H13 40Q 61 
39S H14 H14 H 0 1 N N N 23.079 -36.244 -29.736 4.304   0.181  -1.868 H14 40Q 62 
39S H15 H15 H 0 1 N N N 19.340 -35.401 -27.948 5.413   1.325  2.106  H15 40Q 63 
39S H16 H16 H 0 1 N N N 18.560 -37.641 -28.526 3.597   -0.056 3.016  H16 40Q 64 
39S H39 H39 H 0 1 N N N 21.949 -37.846 -24.679 11.404  -1.280 -1.222 H17 40Q 65 
39S H17 H17 H 0 1 N N N 18.088 -39.558 -29.093 1.169   -2.192 -0.167 H   GGL 66 
39S H18 H18 H 0 1 N N N 19.081 -41.610 -31.024 -0.480  -2.572 2.213  HA  GGL 67 
39S H19 H19 H 0 1 N N N 16.768 -42.519 -29.505 -0.719  -3.620 -0.642 HB2 GGL 68 
39S H20 H20 H 0 1 N N N 18.323 -43.340 -29.874 -1.922  -3.898 0.640  HB3 GGL 69 
39S H21 H21 H 0 1 N N N 19.380 -42.392 -27.949 -2.220  -1.450 0.892  HG2 GGL 70 
39S H22 H22 H 0 1 N N N 18.012 -41.263 -27.668 -1.017  -1.171 -0.390 HG3 GGL 71 
39S H23 H23 H 0 1 N N N 15.346 -40.234 -31.415 0.037   -6.195 2.456  HXT GGL 72 
39S H24 H24 H 0 1 N N N 18.253 -44.777 -28.368 -3.362  -0.058 -1.113 H   GGL 73 
39S H25 H25 H 0 1 N N N 16.539 -45.448 -26.050 -5.104  -2.043 -2.360 HA  GGL 74 
39S H26 H26 H 0 1 N N N 15.707 -45.070 -28.759 -5.099  1.008  -2.408 HB2 GGL 75 
39S H27 H27 H 0 1 N N N 14.740 -45.567 -27.329 -6.344  -0.013 -3.167 HB3 GGL 76 
39S H28 H28 H 0 1 N N N 15.303 -47.935 -27.803 -6.853  -1.031 -0.964 HG2 GGL 77 
39S H29 H29 H 0 1 N N N 16.202 -47.409 -29.267 -5.607  -0.010 -0.205 HG3 GGL 78 
39S H30 H30 H 0 1 N N N 17.896 -48.724 -26.404 -4.310  -1.122 -5.820 HXT GGL 79 
39S H31 H31 H 0 1 N N N 13.793 -49.153 -28.821 -7.991  0.490  0.948  H   GLU 80 
39S H32 H32 H 0 1 N N N 12.116 -48.296 -30.982 -9.495  2.453  -0.606 HA  GLU 81 
39S H33 H33 H 0 1 N N N 10.725 -50.219 -30.327 -9.734  1.495  2.282  HB2 GLU 82 
39S H34 H34 H 0 1 N N N 11.659 -50.380 -28.800 -10.849 2.643  1.502  HB3 GLU 83 
39S H35 H35 H 0 1 N N N 12.419 -51.985 -30.558 -11.395 0.944  -0.220 HG2 GLU 84 
39S H36 H36 H 0 1 N N N 13.714 -50.836 -30.080 -10.280 -0.204 0.560  HG3 GLU 85 
39S H37 H37 H 0 1 N N N 13.895 -49.628 -33.323 -13.553 -1.029 1.994  HE2 GLU 86 
39S H38 H38 H 0 1 N N N 10.292 -46.866 -27.771 -8.588  5.344  1.460  HXT GLU 87 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
39S O   C3  DOUB N N 1  
39S O7  C27 DOUB N N 2  
39S O1  C3  SING N N 3  
39S C3  C2  SING N N 4  
39S C27 O6  SING N N 5  
39S C27 C11 SING N N 6  
39S C2  C1  SING N N 7  
39S O4  C12 DOUB N N 8  
39S C11 N2  SING N N 9  
39S C11 C10 SING N N 10 
39S O2  C4  DOUB N N 11 
39S C   C1  SING N N 12 
39S C   N   SING N N 13 
39S C   C29 SING N N 14 
39S C12 N2  SING N N 15 
39S C12 C13 SING N N 16 
39S O11 C29 DOUB N N 17 
39S C26 C13 DOUB Y N 18 
39S C26 C25 SING Y N 19 
39S C13 C14 SING Y N 20 
39S C10 C9  SING N N 21 
39S C25 C16 DOUB Y N 22 
39S C4  N   SING N N 23 
39S C4  C5  SING N N 24 
39S C29 O10 SING N N 25 
39S C17 N3  SING N N 26 
39S C17 C18 SING N N 27 
39S C14 C15 DOUB Y N 28 
39S C16 C15 SING Y N 29 
39S C16 N3  SING N N 30 
39S C5  C6  SING N N 31 
39S C9  C8  SING N N 32 
39S C6  C7  SING N N 33 
39S C18 N8  SING N N 34 
39S C18 C19 SING N N 35 
39S N1  C8  SING N N 36 
39S N1  C7  SING N N 37 
39S O8  C28 DOUB N N 38 
39S C8  O3  DOUB N N 39 
39S N8  C21 SING N N 40 
39S C7  C28 SING N N 41 
39S C28 O9  SING N N 42 
39S C19 N4  SING N N 43 
39S O5  C22 DOUB N N 44 
39S C21 C22 SING N N 45 
39S C21 C20 DOUB N N 46 
39S N4  C20 SING N N 47 
39S C22 N5  SING N N 48 
39S C20 N7  SING N N 49 
39S N5  C23 SING N N 50 
39S N7  C23 DOUB N N 51 
39S C23 N6  SING N N 52 
39S N6  H1  SING N N 53 
39S N6  H2  SING N N 54 
39S N8  H4  SING N N 55 
39S C18 H6  SING N N 56 
39S C19 H7  SING N N 57 
39S C19 H8  SING N N 58 
39S N4  H9  SING N N 59 
39S C17 H10 SING N N 60 
39S C17 H11 SING N N 61 
39S N3  H12 SING N N 62 
39S C26 H13 SING N N 63 
39S C25 H14 SING N N 64 
39S C15 H15 SING N N 65 
39S C14 H16 SING N N 66 
39S N2  H17 SING N N 67 
39S C11 H18 SING N N 68 
39S C10 H19 SING N N 69 
39S C10 H20 SING N N 70 
39S C9  H21 SING N N 71 
39S C9  H22 SING N N 72 
39S O6  H23 SING N N 73 
39S N1  H24 SING N N 74 
39S C7  H25 SING N N 75 
39S C6  H26 SING N N 76 
39S C6  H27 SING N N 77 
39S C5  H28 SING N N 78 
39S C5  H29 SING N N 79 
39S O9  H30 SING N N 80 
39S N   H31 SING N N 81 
39S C   H32 SING N N 82 
39S C1  H33 SING N N 83 
39S C1  H34 SING N N 84 
39S C2  H35 SING N N 85 
39S C2  H36 SING N N 86 
39S O1  H37 SING N N 87 
39S O10 H38 SING N N 88 
39S N5  H39 SING N N 89 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
39S SMILES           ACDLabs              12.01 "O=C(O)C(NC(=O)CCC(C(=O)O)NC(=O)CCC(C(=O)O)NC(=O)c1ccc(cc1)NCC3NC2=C(N=C(N)NC2=O)NC3)CCC(=O)O" 
39S InChI            InChI                1.03  
;InChI=1S/C29H37N9O12/c30-29-37-23-22(25(44)38-29)33-15(12-32-23)11-31-14-3-1-13(2-4-14)24(43)36-18(28(49)50)6-9-20(40)34-16(26(45)46)5-8-19(39)35-17(27(47)48)7-10-21(41)42/h1-4,15-18,31,33H,5-12H2,(H,34,40)(H,35,39)(H,36,43)(H,41,42)(H,45,46)(H,47,48)(H,49,50)(H4,30,32,37,38,44)/t15-,16-,17-,18-/m0/s1
;
39S InChIKey         InChI                1.03  RXWVHRYZTWZATH-XSLAGTTESA-N 
39S SMILES_CANONICAL CACTVS               3.385 "NC1=NC2=C(N[C@@H](CNc3ccc(cc3)C(=O)N[C@@H](CCC(=O)N[C@@H](CCC(=O)N[C@@H](CCC(O)=O)C(O)=O)C(O)=O)C(O)=O)CN2)C(=O)N1" 
39S SMILES           CACTVS               3.385 "NC1=NC2=C(N[CH](CNc3ccc(cc3)C(=O)N[CH](CCC(=O)N[CH](CCC(=O)N[CH](CCC(O)=O)C(O)=O)C(O)=O)C(O)=O)CN2)C(=O)N1" 
39S SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1cc(ccc1C(=O)N[C@@H](CCC(=O)N[C@@H](CCC(=O)N[C@@H](CCC(=O)O)C(=O)O)C(=O)O)C(=O)O)NC[C@H]2CNC3=C(N2)C(=O)NC(=N3)N" 
39S SMILES           "OpenEye OEToolkits" 1.7.6 "c1cc(ccc1C(=O)NC(CCC(=O)NC(CCC(=O)NC(CCC(=O)O)C(=O)O)C(=O)O)C(=O)O)NCC2CNC3=C(N2)C(=O)NC(=N3)N" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
39S "SYSTEMATIC NAME" ACDLabs              12.01 "N-[4-({[(6S)-2-amino-4-oxo-3,4,5,6,7,8-hexahydropteridin-6-yl]methyl}amino)benzoyl]-L-gamma-glutamyl-L-gamma-glutamyl-L-glutamic acid" 
39S "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 
"(2S)-2-[[(4S)-4-[[(4S)-4-[[4-[[(6S)-2-azanyl-4-oxidanylidene-5,6,7,8-tetrahydro-3H-pteridin-6-yl]methylamino]phenyl]carbonylamino]-5-oxidanyl-5-oxidanylidene-pentanoyl]amino]-5-oxidanyl-5-oxidanylidene-pentanoyl]amino]pentanedioic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
39S "Create component"         2014-07-11 RCSB 
39S "Other modification"       2014-07-11 RCSB 
39S "Other modification"       2014-09-10 RCSB 
39S "Other modification"       2015-01-06 RCSB 
39S "Modify subcomponent list" 2015-01-06 RCSB 
39S "Initial release"          2015-01-14 RCSB 
# 
