data_YVR
# 
_chem_comp.id                                    YVR 
_chem_comp.name                                  gamma-Valerolactone 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C5 H8 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2016-12-03 
_chem_comp.pdbx_modified_date                    2017-04-28 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        100.116 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YVR 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5MG9 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YVR O6 O1 O 0 1 N N N 13.454 -0.643 2.808 2.147  0.671  -0.344 O6 YVR 1  
YVR C5 C1 C 0 1 N N N 12.920 -1.646 2.364 1.110  0.179  0.031  C5 YVR 2  
YVR O1 O2 O 0 1 N N N 11.501 -1.858 2.586 0.055  0.850  0.514  O1 YVR 3  
YVR C4 C2 C 0 1 N N N 13.690 -2.928 2.213 0.780  -1.302 0.028  C4 YVR 4  
YVR C3 C3 C 0 1 N N N 12.581 -3.969 2.291 -0.758 -1.316 -0.136 C3 YVR 5  
YVR C2 C4 C 0 1 N N S 11.323 -3.262 2.795 -1.160 0.057  0.442  C2 YVR 6  
YVR C7 C5 C 0 1 N N N 10.074 -3.761 2.083 -2.172 0.731  -0.486 C7 YVR 7  
YVR H1 H1 H 0 1 N N N 14.418 -3.056 3.028 1.262  -1.799 -0.813 H1 YVR 8  
YVR H2 H2 H 0 1 N N N 14.212 -2.970 1.245 1.071  -1.767 0.970  H2 YVR 9  
YVR H3 H3 H 0 1 N N N 12.397 -4.398 1.295 -1.036 -1.394 -1.187 H3 YVR 10 
YVR H4 H4 H 0 1 N N N 12.866 -4.771 2.988 -1.203 -2.124 0.445  H4 YVR 11 
YVR H5 H5 H 0 1 N N N 11.217 -3.467 3.871 -1.588 -0.062 1.438  H5 YVR 12 
YVR H6 H6 H 0 1 N N N 9.193  -3.230 2.472 -1.735 0.846  -1.478 H6 YVR 13 
YVR H7 H7 H 0 1 N N N 10.168 -3.573 1.003 -3.070 0.116  -0.554 H7 YVR 14 
YVR H8 H8 H 0 1 N N N 9.959  -4.841 2.259 -2.433 1.712  -0.088 H8 YVR 15 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YVR C7 C2 SING N N 1  
YVR C4 C3 SING N N 2  
YVR C4 C5 SING N N 3  
YVR C3 C2 SING N N 4  
YVR C5 O1 SING N N 5  
YVR C5 O6 DOUB N N 6  
YVR O1 C2 SING N N 7  
YVR C4 H1 SING N N 8  
YVR C4 H2 SING N N 9  
YVR C3 H3 SING N N 10 
YVR C3 H4 SING N N 11 
YVR C2 H5 SING N N 12 
YVR C7 H6 SING N N 13 
YVR C7 H7 SING N N 14 
YVR C7 H8 SING N N 15 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YVR InChI            InChI                1.03  "InChI=1S/C5H8O2/c1-4-2-3-5(6)7-4/h4H,2-3H2,1H3/t4-/m0/s1" 
YVR InChIKey         InChI                1.03  GAEKPEKOJKCEMS-BYPYZUCNSA-N                                
YVR SMILES_CANONICAL CACTVS               3.385 "C[C@H]1CCC(=O)O1"                                         
YVR SMILES           CACTVS               3.385 "C[CH]1CCC(=O)O1"                                          
YVR SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C[C@H]1CCC(=O)O1"                                         
YVR SMILES           "OpenEye OEToolkits" 2.0.6 "CC1CCC(=O)O1"                                             
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YVR "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(5~{S})-5-methyloxolan-2-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YVR "Create component" 2016-12-03 EBI  
YVR "Initial release"  2017-05-03 RCSB 
# 
