data_UGR
# 
_chem_comp.id                                    UGR 
_chem_comp.name                                  "(2~{S})-2-azanyl-4-[[(2~{S},3~{S},4~{R},5~{R})-5-[4-azanyl-5-(2-quinolin-3-ylethynyl)pyrrolo[2,3-d]pyrimidin-7-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methylsulfanyl]butanoic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C26 H26 N6 O5 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-02-03 
_chem_comp.pdbx_modified_date                    2023-03-31 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        534.587 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     UGR 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8CET 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
UGR N   N1  N 0 1 N N N 18.620 13.240 41.831 7.763  -3.170 0.830  N   UGR 1  
UGR CA  C1  C 0 1 N N S 19.921 13.207 41.079 6.622  -3.589 0.004  CA  UGR 2  
UGR C   C2  C 0 1 N N N 19.932 12.171 39.945 7.102  -4.520 -1.079 C   UGR 3  
UGR O   O1  O 0 1 N N N 18.973 12.157 39.151 8.268  -4.532 -1.394 O   UGR 4  
UGR CB  C3  C 0 1 N N N 21.085 12.912 42.028 5.974  -2.357 -0.632 CB  UGR 5  
UGR OXT O2  O 0 1 N N N 20.996 11.505 39.823 6.232  -5.337 -1.694 OXT UGR 6  
UGR C10 C4  C 0 1 Y N N 21.453 22.554 43.808 -2.105 5.559  -1.471 C10 UGR 7  
UGR C12 C5  C 0 1 Y N N 22.588 21.082 45.012 -1.075 3.660  -0.677 C12 UGR 8  
UGR C13 C6  C 0 1 Y N N 22.754 21.996 46.071 -2.308 2.990  -0.747 C13 UGR 9  
UGR C14 C7  C 0 1 Y N N 23.528 21.318 47.072 -2.056 1.618  -0.280 C14 UGR 10 
UGR C15 C8  C 0 1 N N N 24.021 21.913 48.276 -3.013 0.559  -0.173 C15 UGR 11 
UGR C16 C9  C 0 1 N N N 24.475 22.486 49.217 -3.799 -0.310 -0.085 C16 UGR 12 
UGR C17 C10 C 0 1 Y N N 25.092 23.217 50.283 -4.756 -1.369 0.023  C17 UGR 13 
UGR C18 C11 C 0 1 Y N N 26.070 22.627 51.088 -6.099 -1.152 -0.343 C18 UGR 14 
UGR C20 C12 C 0 1 Y N N 26.369 24.550 52.319 -6.678 -3.326 0.187  C20 UGR 15 
UGR C21 C13 C 0 1 Y N N 25.394 25.234 51.564 -5.346 -3.626 0.570  C21 UGR 16 
UGR C22 C14 C 0 1 Y N N 24.758 24.527 50.531 -4.367 -2.623 0.484  C22 UGR 17 
UGR C23 C15 C 0 1 Y N N 25.114 26.580 51.878 -5.029 -4.917 1.027  C23 UGR 18 
UGR C24 C16 C 0 1 Y N N 25.774 27.209 52.893 -6.004 -5.865 1.097  C24 UGR 19 
UGR C25 C17 C 0 1 Y N N 26.732 26.536 53.635 -7.313 -5.572 0.721  C25 UGR 20 
UGR C26 C18 C 0 1 Y N N 27.032 25.232 53.362 -7.655 -4.332 0.275  C26 UGR 21 
UGR C27 C19 C 0 1 Y N N 23.784 20.060 46.592 -0.731 1.555  0.029  C27 UGR 22 
UGR C29 C20 C 0 1 N N R 23.327 18.733 44.493 1.268  3.072  0.013  C29 UGR 23 
UGR C30 C21 C 0 1 N N R 24.698 18.066 44.451 1.483  3.633  1.436  C30 UGR 24 
UGR C32 C22 C 0 1 N N S 24.328 16.671 43.924 2.837  3.032  1.876  C32 UGR 25 
UGR C34 C23 C 0 1 N N S 22.851 16.505 44.324 3.279  2.178  0.667  C34 UGR 26 
UGR C36 C24 C 0 1 N N N 22.630 15.272 45.183 3.969  0.898  1.143  C36 UGR 27 
UGR C38 C25 C 0 1 N N N 21.351 14.038 43.011 5.377  -1.472 0.464  C38 UGR 28 
UGR C8  C26 C 0 1 Y N N 22.174 23.279 45.877 -3.431 3.691  -1.203 C8  UGR 29 
UGR N11 N2  N 0 1 Y N N 21.949 21.316 43.864 -1.025 4.938  -1.049 N11 UGR 30 
UGR N19 N3  N 0 1 Y N N 26.697 23.242 52.070 -6.993 -2.103 -0.254 N19 UGR 31 
UGR N28 N4  N 0 1 Y N N 23.225 19.908 45.348 -0.148 2.768  -0.207 N28 UGR 32 
UGR N7  N5  N 0 1 N N N 22.216 24.269 46.787 -4.666 3.073  -1.288 N7  UGR 33 
UGR N9  N6  N 0 1 Y N N 21.531 23.525 44.718 -3.282 4.966  -1.552 N9  UGR 34 
UGR O31 O3  O 0 1 N N N 25.600 18.720 43.562 1.552  5.060  1.406  O31 UGR 35 
UGR O33 O4  O 0 1 N N N 24.502 16.600 42.511 3.786  4.069  2.131  O33 UGR 36 
UGR O35 O5  O 0 1 N N N 22.456 17.732 44.974 2.054  1.861  -0.029 O35 UGR 37 
UGR S37 S1  S 0 1 N N N 22.714 13.766 44.172 4.608  -0.012 -0.290 S37 UGR 38 
UGR H1  H1  H 0 1 N N N 18.670 13.929 42.554 8.169  -3.958 1.312  H1  UGR 39 
UGR H2  H2  H 0 1 N N N 17.877 13.470 41.202 8.455  -2.691 0.274  H2  UGR 40 
UGR H4  H4  H 0 1 N N N 20.089 14.199 40.633 5.891  -4.103 0.628  H4  UGR 41 
UGR H5  H5  H 0 1 N N N 20.851 11.999 42.596 6.727  -1.795 -1.184 H5  UGR 42 
UGR H6  H6  H 0 1 N N N 21.993 12.749 41.429 5.185  -2.674 -1.314 H6  UGR 43 
UGR H7  H7  H 0 1 N N N 20.956 10.987 39.028 6.587  -5.917 -2.383 H7  UGR 44 
UGR H8  H8  H 0 1 N N N 20.917 22.802 42.904 -2.027 6.597  -1.760 H8  UGR 45 
UGR H9  H9  H 0 1 N N N 26.329 21.597 50.892 -6.397 -0.179 -0.704 H9  UGR 46 
UGR H10 H10 H 0 1 N N N 24.004 25.014 49.930 -3.343 -2.819 0.767  H10 UGR 47 
UGR H11 H11 H 0 1 N N N 24.370 27.118 51.310 -4.017 -5.155 1.320  H11 UGR 48 
UGR H12 H12 H 0 1 N N N 25.548 28.240 53.120 -5.759 -6.856 1.449  H12 UGR 49 
UGR H13 H13 H 0 1 N N N 27.246 27.047 54.436 -8.068 -6.341 0.785  H13 UGR 50 
UGR H14 H14 H 0 1 N N N 27.781 24.720 53.948 -8.675 -4.122 -0.012 H14 UGR 51 
UGR H15 H15 H 0 1 N N N 24.344 19.300 47.116 -0.220 0.680  0.403  H15 UGR 52 
UGR H16 H16 H 0 1 N N N 23.046 19.009 43.466 1.623  3.781  -0.734 H16 UGR 53 
UGR H17 H17 H 0 1 N N N 25.113 17.987 45.466 0.685  3.304  2.101  H17 UGR 54 
UGR H18 H18 H 0 1 N N N 24.935 15.911 44.437 2.708  2.406  2.759  H18 UGR 55 
UGR H19 H19 H 0 1 N N N 22.265 16.385 43.401 3.944  2.751  0.021  H19 UGR 56 
UGR H20 H20 H 0 1 N N N 21.639 15.334 45.657 4.794  1.156  1.807  H20 UGR 57 
UGR H21 H21 H 0 1 N N N 23.407 15.229 45.961 3.251  0.276  1.678  H21 UGR 58 
UGR H22 H22 H 0 1 N N N 21.577 14.945 42.432 4.624  -2.035 1.016  H22 UGR 59 
UGR H23 H23 H 0 1 N N N 20.434 14.197 43.598 6.167  -1.156 1.145  H23 UGR 60 
UGR H24 H24 H 0 1 N N N 21.735 25.070 46.431 -4.762 2.143  -1.030 H24 UGR 61 
UGR H25 H25 H 0 1 N N N 21.776 23.964 47.632 -5.437 3.569  -1.606 H25 UGR 62 
UGR H26 H26 H 0 1 N N N 25.816 19.579 43.905 1.686  5.466  2.273  H26 UGR 63 
UGR H27 H27 H 0 1 N N N 25.422 16.706 42.299 3.558  4.636  2.880  H27 UGR 64 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
UGR O   C   DOUB N N 1  
UGR OXT C   SING N N 2  
UGR C   CA  SING N N 3  
UGR CA  N   SING N N 4  
UGR CA  CB  SING N N 5  
UGR CB  C38 SING N N 6  
UGR O33 C32 SING N N 7  
UGR C38 S37 SING N N 8  
UGR O31 C30 SING N N 9  
UGR C10 N11 DOUB Y N 10 
UGR C10 N9  SING Y N 11 
UGR N11 C12 SING Y N 12 
UGR C32 C34 SING N N 13 
UGR C32 C30 SING N N 14 
UGR S37 C36 SING N N 15 
UGR C34 O35 SING N N 16 
UGR C34 C36 SING N N 17 
UGR C30 C29 SING N N 18 
UGR C29 O35 SING N N 19 
UGR C29 N28 SING N N 20 
UGR N9  C8  DOUB Y N 21 
UGR C12 N28 SING Y N 22 
UGR C12 C13 DOUB Y N 23 
UGR N28 C27 SING Y N 24 
UGR C8  C13 SING Y N 25 
UGR C8  N7  SING N N 26 
UGR C13 C14 SING Y N 27 
UGR C27 C14 DOUB Y N 28 
UGR C14 C15 SING N N 29 
UGR C15 C16 TRIP N N 30 
UGR C16 C17 SING N N 31 
UGR C17 C22 DOUB Y N 32 
UGR C17 C18 SING Y N 33 
UGR C22 C21 SING Y N 34 
UGR C18 N19 DOUB Y N 35 
UGR C21 C23 DOUB Y N 36 
UGR C21 C20 SING Y N 37 
UGR C23 C24 SING Y N 38 
UGR N19 C20 SING Y N 39 
UGR C20 C26 DOUB Y N 40 
UGR C24 C25 DOUB Y N 41 
UGR C26 C25 SING Y N 42 
UGR N   H1  SING N N 43 
UGR N   H2  SING N N 44 
UGR CA  H4  SING N N 45 
UGR CB  H5  SING N N 46 
UGR CB  H6  SING N N 47 
UGR OXT H7  SING N N 48 
UGR C10 H8  SING N N 49 
UGR C18 H9  SING N N 50 
UGR C22 H10 SING N N 51 
UGR C23 H11 SING N N 52 
UGR C24 H12 SING N N 53 
UGR C25 H13 SING N N 54 
UGR C26 H14 SING N N 55 
UGR C27 H15 SING N N 56 
UGR C29 H16 SING N N 57 
UGR C30 H17 SING N N 58 
UGR C32 H18 SING N N 59 
UGR C34 H19 SING N N 60 
UGR C36 H20 SING N N 61 
UGR C36 H21 SING N N 62 
UGR C38 H22 SING N N 63 
UGR C38 H23 SING N N 64 
UGR N7  H24 SING N N 65 
UGR N7  H25 SING N N 66 
UGR O31 H26 SING N N 67 
UGR O33 H27 SING N N 68 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
UGR InChI            InChI                1.06  "InChI=1S/C26H26N6O5S/c27-17(26(35)36)7-8-38-12-19-21(33)22(34)25(37-19)32-11-16(20-23(28)30-13-31-24(20)32)6-5-14-9-15-3-1-2-4-18(15)29-10-14/h1-4,9-11,13,17,19,21-22,25,33-34H,7-8,12,27H2,(H,35,36)(H2,28,30,31)/t17-,19+,21+,22+,25+/m0/s1" 
UGR InChIKey         InChI                1.06  SPMFBZXXQBXKFX-LUOSIZPJSA-N                                                                                                                                                                                                                      
UGR SMILES_CANONICAL CACTVS               3.385 "N[C@@H](CCSC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cc(C#Cc3cnc4ccccc4c3)c5c(N)ncnc25)C(O)=O"                                                                                                                                                           
UGR SMILES           CACTVS               3.385 "N[CH](CCSC[CH]1O[CH]([CH](O)[CH]1O)n2cc(C#Cc3cnc4ccccc4c3)c5c(N)ncnc25)C(O)=O"                                                                                                                                                                  
UGR SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)cc(cn2)C#Cc3cn(c4c3c(ncn4)N)[C@H]5[C@@H]([C@@H]([C@H](O5)CSCC[C@@H](C(=O)O)N)O)O"                                                                                                                                                    
UGR SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)cc(cn2)C#Cc3cn(c4c3c(ncn4)N)C5C(C(C(O5)CSCCC(C(=O)O)N)O)O"                                                                                                                                                                           
# 
_pdbx_chem_comp_identifier.comp_id           UGR 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{S})-2-azanyl-4-[[(2~{S},3~{S},4~{R},5~{R})-5-[4-azanyl-5-(2-quinolin-3-ylethynyl)pyrrolo[2,3-d]pyrimidin-7-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methylsulfanyl]butanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
UGR "Create component" 2023-02-03 PDBE 
UGR "Initial release"  2023-04-05 RCSB 
# 
