data_V3P
#

_chem_comp.id                                   V3P
_chem_comp.name                                 "4-iodophenyl 1,4-dithio-beta-D-glucopyranoside"
_chem_comp.type                                 D-saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C12 H15 I O4 S2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-06-21
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       414.280
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    V3P
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1F9O
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
V3P  C4   C4   C  0  1  N  N  S  61.976  78.940  58.002   4.538   0.796  -0.193  C4   V3P   1  
V3P  C1   C1   C  0  1  N  N  S  63.708  80.074  55.936   2.305  -1.010   0.082  C1   V3P   2  
V3P  C2   C2   C  0  1  N  N  R  62.438  79.298  55.514   3.736  -1.552   0.063  C2   V3P   3  
V3P  O2   O2   O  0  1  N  N  N  61.866  79.932  54.376   3.811  -2.732   0.865  O2   V3P   4  
V3P  C3   C3   C  0  1  N  N  R  61.372  79.226  56.617   4.684  -0.489   0.627  C3   V3P   5  
V3P  O3   O3   O  0  1  N  N  N  60.428  78.213  56.293   6.031  -0.958   0.545  O3   V3P   6  
V3P  C5   C5   C  0  1  N  N  R  63.095  79.972  58.220   3.075   1.247  -0.164  C5   V3P   7  
V3P  O5   O5   O  0  1  N  N  N  64.125  79.735  57.263   2.245   0.201  -0.673  O5   V3P   8  
V3P  S1   S1   S  0  1  N  N  N  65.402  80.310  55.146   1.184  -2.235  -0.650  S1   V3P   9  
V3P  C6   C6   C  0  1  N  N  N  63.752  79.989  59.589   2.910   2.497  -1.031  C6   V3P  10  
V3P  O6   O6   O  0  1  N  N  N  64.741  81.008  59.664   1.572   2.986  -0.911  O6   V3P  11  
V3P  S4   S4   S  0  1  N  N  N  60.681  78.997  59.335   5.587   2.093   0.520  S4   V3P  12  
V3P  C11  C11  C  0  1  Y  N  N  63.377  83.443  53.663  -2.788  -1.604  -0.659  C11  V3P  13  
V3P  C21  C21  C  0  1  Y  N  N  63.738  82.367  54.369  -1.545  -2.173  -0.850  C21  V3P  14  
V3P  C31  C31  C  0  1  Y  N  N  65.004  81.807  54.225  -0.405  -1.512  -0.409  C31  V3P  15  
V3P  C41  C41  C  0  1  Y  N  N  65.910  82.392  53.337  -0.521  -0.279   0.222  C41  V3P  16  
V3P  C51  C51  C  0  1  Y  N  N  65.547  83.494  52.616  -1.767   0.284   0.409  C51  V3P  17  
V3P  C61  C61  C  0  1  Y  N  N  64.273  83.998  52.793  -2.900  -0.374  -0.035  C61  V3P  18  
V3P  I6   I6   I  0  1  N  N  N  63.648  85.562  51.727  -4.789   0.485   0.251  I6   V3P  19  
V3P  H4   H4   H  0  1  N  N  N  62.396  77.924  58.023   4.841   0.608  -1.223  H4   V3P  20  
V3P  H1   H1   H  0  1  N  N  N  63.362  81.115  56.010   2.004  -0.812   1.111  H1   V3P  21  
V3P  H2   H2   H  0  1  N  N  N  62.736  78.271  55.256   4.023  -1.789  -0.962  H2   V3P  22  
V3P  HO2  HO2  H  0  1  N  Y  N  61.085  79.461  54.110   3.231  -3.447   0.568  HO2  V3P  23  
V3P  H3   H3   H  0  1  N  N  N  60.864  80.200  56.663   4.429  -0.289   1.668  H3   V3P  24  
V3P  HO3  HO3  H  0  1  N  Y  N  59.767  78.166  56.974   6.194  -1.775   1.037  HO3  V3P  25  
V3P  H5   H5   H  0  1  N  N  N  62.665  80.969  58.042   2.785   1.475   0.862  H5   V3P  26  
V3P  H61  H61  H  0  1  N  N  N  62.984  80.175  60.355   3.608   3.265  -0.698  H61  V3P  27  
V3P  H62  H62  H  0  1  N  N  N  64.225  79.013  59.774   3.114   2.247  -2.072  H62  V3P  28  
V3P  HO6  HO6  H  0  1  N  Y  N  65.139  81.001  60.527   1.395   3.779  -1.435  HO6  V3P  29  
V3P  HS4  HS4  H  0  1  N  Y  N  61.378  78.736  60.401   6.821   1.567   0.430  HS4  V3P  30  
V3P  H12  H12  H  0  1  N  N  N  62.391  83.868  53.778  -3.675  -2.117  -1.002  H12  V3P  31  
V3P  H13  H13  H  0  1  N  N  N  63.037  81.925  55.062  -1.458  -3.131  -1.340  H13  V3P  32  
V3P  H14  H14  H  0  1  N  N  N  66.898  81.973  53.220   0.363   0.237   0.566  H14  V3P  33  
V3P  H15  H15  H  0  1  N  N  N  66.237  83.958  51.927  -1.858   1.244   0.897  H15  V3P  34  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
V3P  I6   C61  SING  N  N   1  
V3P  C51  C61  DOUB  Y  N   2  
V3P  C51  C41  SING  Y  N   3  
V3P  C61  C11  SING  Y  N   4  
V3P  C41  C31  DOUB  Y  N   5  
V3P  C11  C21  DOUB  Y  N   6  
V3P  C31  C21  SING  Y  N   7  
V3P  C31  S1   SING  N  N   8  
V3P  O2   C2   SING  N  N   9  
V3P  S1   C1   SING  N  N  10  
V3P  C2   C1   SING  N  N  11  
V3P  C2   C3   SING  N  N  12  
V3P  C1   O5   SING  N  N  13  
V3P  O3   C3   SING  N  N  14  
V3P  C3   C4   SING  N  N  15  
V3P  O5   C5   SING  N  N  16  
V3P  C4   C5   SING  N  N  17  
V3P  C4   S4   SING  N  N  18  
V3P  C5   C6   SING  N  N  19  
V3P  C6   O6   SING  N  N  20  
V3P  C4   H4   SING  N  N  21  
V3P  C1   H1   SING  N  N  22  
V3P  C2   H2   SING  N  N  23  
V3P  O2   HO2  SING  N  N  24  
V3P  C3   H3   SING  N  N  25  
V3P  O3   HO3  SING  N  N  26  
V3P  C5   H5   SING  N  N  27  
V3P  C6   H61  SING  N  N  28  
V3P  C6   H62  SING  N  N  29  
V3P  O6   HO6  SING  N  N  30  
V3P  S4   HS4  SING  N  N  31  
V3P  C11  H12  SING  N  N  32  
V3P  C21  H13  SING  N  N  33  
V3P  C41  H14  SING  N  N  34  
V3P  C51  H15  SING  N  N  35  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
V3P  SMILES            ACDLabs               12.01  "C1(C(CO)OC(C(C1O)O)Sc2ccc(cc2)I)S"  
V3P  InChI             InChI                 1.03   "InChI=1S/C12H15IO4S2/c13-6-1-3-7(4-2-6)19-12-10(16)9(15)11(18)8(5-14)17-12/h1-4,8-12,14-16,18H,5H2/t8-,9-,10-,11-,12+/m1/s1"  
V3P  InChIKey          InChI                 1.03   VVMIJZYWEDEWJA-OOCWMUITSA-N  
V3P  SMILES_CANONICAL  CACTVS                3.385  "OC[C@H]1O[C@@H](Sc2ccc(I)cc2)[C@H](O)[C@@H](O)[C@@H]1S"  
V3P  SMILES            CACTVS                3.385  "OC[CH]1O[CH](Sc2ccc(I)cc2)[CH](O)[CH](O)[CH]1S"  
V3P  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1cc(ccc1S[C@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CO)S)O)O)I"  
V3P  SMILES            "OpenEye OEToolkits"  2.0.7  "c1cc(ccc1SC2C(C(C(C(O2)CO)S)O)O)I"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
V3P  "SYSTEMATIC NAME"  ACDLabs               12.01  "4-iodophenyl 1,4-dithio-beta-D-glucopyranoside"  
V3P  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(2~{S},3~{R},4~{R},5~{S},6~{R})-6-(hydroxymethyl)-2-(4-iodophenyl)sulfanyl-5-sulfanyl-oxane-3,4-diol"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
V3P  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
V3P  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
V3P  "CARBOHYDRATE ANOMER"                  beta      PDB  ?  
V3P  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
V3P  "Create component"  2020-06-21  RCSB  
V3P  "Initial release"   2020-07-01  RCSB  
##
