data_CVP
# 
_chem_comp.id                                    CVP 
_chem_comp.name                                  "4-[(piperazin-1-yl)methyl]-N-{[4-({[(pyridin-3-yl)methyl]carbamoyl}amino)phenyl]methyl}benzamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C26 H30 N6 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-10-04 
_chem_comp.pdbx_modified_date                    2018-09-28 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        458.555 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     CVP 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6B75 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
CVP C1  C1  C 0 1 Y N N 17.136 -65.977 -5.959  -3.251  -1.474 -0.872 C1  CVP 1  
CVP C3  C2  C 0 1 N N N 14.897 -65.063 -6.549  -5.052  -0.139 -0.073 C3  CVP 2  
CVP C11 C3  C 0 1 Y N N 19.535 -66.267 -6.136  -1.155  -2.219 -1.767 C11 CVP 3  
CVP C12 C4  C 0 1 Y N N 18.273 -66.282 -6.727  -2.391  -1.630 -1.951 C12 CVP 4  
CVP C13 C5  C 0 1 Y N N 12.208 -62.143 -8.914  -9.373  0.760  0.791  C13 CVP 5  
CVP C15 C6  C 0 1 Y N N 12.737 -61.913 -11.234 -10.840 2.222  -0.219 C15 CVP 6  
CVP C16 C7  C 0 1 Y N N 13.338 -63.180 -11.226 -9.809  3.069  -0.578 C16 CVP 7  
CVP C17 C8  C 0 1 Y N N 13.352 -63.929 -10.030 -8.509  2.739  -0.227 C17 CVP 8  
CVP C18 C9  C 0 1 N N N 21.100 -65.859 -4.192  0.575   -3.294 -0.313 C18 CVP 9  
CVP C20 C10 C 0 1 N N N 21.284 -67.261 -2.135  2.849   -2.606 0.230  C20 CVP 10 
CVP C21 C11 C 0 1 Y N N 21.830 -68.532 -1.486  3.846   -1.565 0.557  C21 CVP 11 
CVP C23 C12 C 0 1 Y N N 22.252 -68.522 -0.139  5.178   -1.917 0.785  C23 CVP 12 
CVP C24 C13 C 0 1 Y N N 22.841 -69.667 0.423   6.104   -0.941 1.090  C24 CVP 13 
CVP C25 C14 C 0 1 Y N N 23.057 -70.832 -0.356  5.715   0.385  1.170  C25 CVP 14 
CVP C26 C15 C 0 1 Y N N 22.642 -70.846 -1.701  4.397   0.740  0.946  C26 CVP 15 
CVP C27 C16 C 0 1 Y N N 22.058 -69.698 -2.264  3.462   -0.225 0.633  C27 CVP 16 
CVP C28 C17 C 0 1 N N N 23.723 -72.084 0.254   6.732   1.446  1.504  C28 CVP 17 
CVP C30 C18 C 0 1 N N N 25.945 -72.749 1.115   8.154   3.145  0.526  C30 CVP 18 
CVP N2  N1  N 0 1 N N N 15.923 -65.927 -6.707  -4.507  -0.884 -1.056 N2  CVP 19 
CVP N4  N2  N 0 1 N N N 13.938 -65.124 -7.498  -6.304  0.341  -0.207 N4  CVP 20 
CVP O5  O1  O 0 1 N N N 14.809 -64.319 -5.586  -4.413  0.100  0.933  O5  CVP 21 
CVP C6  C19 C 0 1 N N N 12.748 -64.270 -7.528  -6.896  1.150  0.861  C6  CVP 22 
CVP C7  C20 C 0 1 Y N N 12.765 -63.437 -8.844  -8.292  1.558  0.466  C7  CVP 23 
CVP C8  C21 C 0 1 Y N N 17.293 -65.555 -4.619  -2.866  -1.911 0.389  C8  CVP 24 
CVP C9  C22 C 0 1 Y N N 18.568 -65.557 -4.017  -1.629  -2.499 0.566  C9  CVP 25 
CVP C10 C23 C 0 1 Y N N 19.692 -65.902 -4.787  -0.774  -2.652 -0.510 C10 CVP 26 
CVP N14 N3  N 0 1 Y N N 12.201 -61.430 -10.079 -10.597 1.109  0.446  N14 CVP 27 
CVP N19 N4  N 0 1 N N N 21.493 -67.064 -3.470  1.564   -2.263 0.011  N19 CVP 28 
CVP O22 O2  O 0 1 N N N 20.737 -66.425 -1.421  3.187   -3.771 0.159  O22 CVP 29 
CVP N29 N5  N 0 1 N N N 25.196 -72.130 -0.017  7.336   1.952  0.264  N29 CVP 30 
CVP C31 C24 C 0 1 N N N 27.481 -72.795 0.857   8.700   3.687  -0.797 C31 CVP 31 
CVP N32 N6  N 0 1 N N N 27.804 -73.370 -0.477  9.493   2.643  -1.462 N32 CVP 32 
CVP C33 C25 C 0 1 N N N 27.122 -72.679 -1.595  8.675   1.451  -1.724 C33 CVP 33 
CVP C34 C26 C 0 1 N N N 25.583 -72.667 -1.359  8.129   0.908  -0.400 C34 CVP 34 
CVP H1  H1  H 0 1 N N N 20.402 -66.539 -6.720  -0.486  -2.341 -2.606 H1  CVP 35 
CVP H2  H2  H 0 1 N N N 18.169 -66.528 -7.774  -2.688  -1.292 -2.932 H2  CVP 36 
CVP H3  H3  H 0 1 N N N 11.777 -61.706 -8.026  -9.213  -0.161 1.331  H3  CVP 37 
CVP H4  H4  H 0 1 N N N 12.700 -61.329 -12.142 -11.855 2.472  -0.488 H4  CVP 38 
CVP H5  H5  H 0 1 N N N 13.785 -63.578 -12.125 -10.014 3.980  -1.122 H5  CVP 39 
CVP H6  H6  H 0 1 N N N 13.823 -64.901 -10.022 -7.683  3.382  -0.495 H6  CVP 40 
CVP H7  H7  H 0 1 N N N 21.815 -65.703 -5.014  0.520   -4.013 0.504  H7  CVP 41 
CVP H8  H8  H 0 1 N N N 21.152 -65.010 -3.495  0.871   -3.806 -1.229 H8  CVP 42 
CVP H9  H9  H 0 1 N N N 22.122 -67.633 0.460   5.482   -2.951 0.723  H9  CVP 43 
CVP H10 H10 H 0 1 N N N 23.133 -69.660 1.463   7.134   -1.212 1.266  H10 CVP 44 
CVP H11 H11 H 0 1 N N N 22.772 -71.736 -2.299  4.100   1.777  1.010  H11 CVP 45 
CVP H12 H12 H 0 1 N N N 21.778 -69.703 -3.307  2.434   0.054  0.458  H12 CVP 46 
CVP H13 H13 H 0 1 N N N 23.563 -72.076 1.342   6.243   2.265  2.031  H13 CVP 47 
CVP H14 H14 H 0 1 N N N 23.255 -72.981 -0.179  7.509   1.018  2.138  H14 CVP 48 
CVP H15 H15 H 0 1 N N N 25.757 -72.162 2.026   7.541   3.908  1.006  H15 CVP 49 
CVP H16 H16 H 0 1 N N N 25.580 -73.777 1.260   8.984   2.880  1.180  H16 CVP 50 
CVP H17 H17 H 0 1 N N N 15.820 -66.609 -7.431  -4.985  -1.010 -1.890 H17 CVP 51 
CVP H18 H18 H 0 1 N N N 14.048 -65.797 -8.229  -6.813  0.150  -1.010 H18 CVP 52 
CVP H19 H19 H 0 1 N N N 12.756 -63.593 -6.661  -6.935  0.566  1.780  H19 CVP 53 
CVP H20 H20 H 0 1 N N N 11.843 -64.895 -7.497  -6.289  2.041  1.021  H20 CVP 54 
CVP H21 H21 H 0 1 N N N 16.432 -65.230 -4.054  -3.533  -1.791 1.230  H21 CVP 55 
CVP H22 H22 H 0 1 N N N 18.680 -65.296 -2.975  -1.328  -2.839 1.546  H22 CVP 56 
CVP H23 H23 H 0 1 N N N 21.944 -67.792 -3.986  1.294   -1.332 0.067  H23 CVP 57 
CVP H25 H25 H 0 1 N N N 27.954 -73.413 1.634   7.869   3.977  -1.441 H25 CVP 58 
CVP H26 H26 H 0 1 N N N 27.881 -71.772 0.909   9.330   4.555  -0.603 H26 CVP 59 
CVP H27 H27 H 0 1 N N N 27.529 -74.331 -0.483  10.310  2.409  -0.918 H27 CVP 60 
CVP H29 H29 H 0 1 N N N 27.342 -73.205 -2.536  7.844   1.716  -2.378 H29 CVP 61 
CVP H30 H30 H 0 1 N N N 27.488 -71.644 -1.660  9.288   0.688  -2.204 H30 CVP 62 
CVP H31 H31 H 0 1 N N N 25.115 -72.042 -2.134  8.960   0.618  0.244  H31 CVP 63 
CVP H32 H32 H 0 1 N N N 25.208 -73.698 -1.444  7.499   0.041  -0.595 H32 CVP 64 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
CVP C15 C16 DOUB Y N 1  
CVP C15 N14 SING Y N 2  
CVP C16 C17 SING Y N 3  
CVP N14 C13 DOUB Y N 4  
CVP C17 C7  DOUB Y N 5  
CVP C13 C7  SING Y N 6  
CVP C7  C6  SING N N 7  
CVP C6  N4  SING N N 8  
CVP N4  C3  SING N N 9  
CVP C12 C11 DOUB Y N 10 
CVP C12 C1  SING Y N 11 
CVP N2  C3  SING N N 12 
CVP N2  C1  SING N N 13 
CVP C3  O5  DOUB N N 14 
CVP C11 C10 SING Y N 15 
CVP C1  C8  DOUB Y N 16 
CVP C10 C18 SING N N 17 
CVP C10 C9  DOUB Y N 18 
CVP C8  C9  SING Y N 19 
CVP C18 N19 SING N N 20 
CVP N19 C20 SING N N 21 
CVP C27 C26 DOUB Y N 22 
CVP C27 C21 SING Y N 23 
CVP C20 C21 SING N N 24 
CVP C20 O22 DOUB N N 25 
CVP C26 C25 SING Y N 26 
CVP C33 C34 SING N N 27 
CVP C33 N32 SING N N 28 
CVP C21 C23 DOUB Y N 29 
CVP C34 N29 SING N N 30 
CVP N32 C31 SING N N 31 
CVP C25 C28 SING N N 32 
CVP C25 C24 DOUB Y N 33 
CVP C23 C24 SING Y N 34 
CVP N29 C28 SING N N 35 
CVP N29 C30 SING N N 36 
CVP C31 C30 SING N N 37 
CVP C11 H1  SING N N 38 
CVP C12 H2  SING N N 39 
CVP C13 H3  SING N N 40 
CVP C15 H4  SING N N 41 
CVP C16 H5  SING N N 42 
CVP C17 H6  SING N N 43 
CVP C18 H7  SING N N 44 
CVP C18 H8  SING N N 45 
CVP C23 H9  SING N N 46 
CVP C24 H10 SING N N 47 
CVP C26 H11 SING N N 48 
CVP C27 H12 SING N N 49 
CVP C28 H13 SING N N 50 
CVP C28 H14 SING N N 51 
CVP C30 H15 SING N N 52 
CVP C30 H16 SING N N 53 
CVP N2  H17 SING N N 54 
CVP N4  H18 SING N N 55 
CVP C6  H19 SING N N 56 
CVP C6  H20 SING N N 57 
CVP C8  H21 SING N N 58 
CVP C9  H22 SING N N 59 
CVP N19 H23 SING N N 60 
CVP C31 H25 SING N N 61 
CVP C31 H26 SING N N 62 
CVP N32 H27 SING N N 63 
CVP C33 H29 SING N N 64 
CVP C33 H30 SING N N 65 
CVP C34 H31 SING N N 66 
CVP C34 H32 SING N N 67 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
CVP SMILES           ACDLabs              12.01 "c1(ccc(cc1)CNC(c3ccc(CN2CCNCC2)cc3)=O)NC(=O)NCc4cnccc4"                                                                                                                          
CVP InChI            InChI                1.03  "InChI=1S/C26H30N6O2/c33-25(23-7-3-21(4-8-23)19-32-14-12-27-13-15-32)29-17-20-5-9-24(10-6-20)31-26(34)30-18-22-2-1-11-28-16-22/h1-11,16,27H,12-15,17-19H2,(H,29,33)(H2,30,31,34)" 
CVP InChIKey         InChI                1.03  UPQVXXVUUYBILK-UHFFFAOYSA-N                                                                                                                                                       
CVP SMILES_CANONICAL CACTVS               3.385 "O=C(NCc1cccnc1)Nc2ccc(CNC(=O)c3ccc(CN4CCNCC4)cc3)cc2"                                                                                                                            
CVP SMILES           CACTVS               3.385 "O=C(NCc1cccnc1)Nc2ccc(CNC(=O)c3ccc(CN4CCNCC4)cc3)cc2"                                                                                                                            
CVP SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "c1cc(cnc1)CNC(=O)Nc2ccc(cc2)CNC(=O)c3ccc(cc3)CN4CCNCC4"                                                                                                                          
CVP SMILES           "OpenEye OEToolkits" 2.0.6 "c1cc(cnc1)CNC(=O)Nc2ccc(cc2)CNC(=O)c3ccc(cc3)CN4CCNCC4"                                                                                                                          
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
CVP "SYSTEMATIC NAME" ACDLabs              12.01 "4-[(piperazin-1-yl)methyl]-N-{[4-({[(pyridin-3-yl)methyl]carbamoyl}amino)phenyl]methyl}benzamide" 
CVP "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "4-(piperazin-1-ylmethyl)-~{N}-[[4-(pyridin-3-ylmethylcarbamoylamino)phenyl]methyl]benzamide"      
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
CVP "Create component" 2017-10-04 RCSB 
CVP "Initial release"  2018-10-03 RCSB 
# 
