data_64P
#

_chem_comp.id                                   64P
_chem_comp.name                                 "5-aminothymidine 5'-(dihydrogen phosphate)"
_chem_comp.type                                 "DNA LINKING"
_chem_comp.pdbx_type                            ATOMN
_chem_comp.formula                              "C10 H18 N3 O8 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2009-03-04
_chem_comp.pdbx_modified_date                   2019-07-24
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       339.239
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    64P
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       ?
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
64P  P       P       P  0  1  N  N  N   3.902  -18.960  -0.361  -4.256   1.156   0.009  P       64P   1  
64P  OP2     OP2     O  0  1  N  N  N   3.214  -17.845  -1.011  -5.387   0.269   0.363  OP2     64P   2  
64P  OP1     OP1     O  0  1  N  N  N   5.330  -19.180  -0.787  -3.805   1.993   1.308  OP1     64P   3  
64P  "O5'"   "O5'"   O  0  1  N  N  N   3.877  -18.715   1.208  -3.020   0.267  -0.512  "O5'"   64P   4  
64P  "C5'"   "C5'"   C  0  1  N  N  N   2.604  -18.643   1.814  -2.453  -0.801   0.249  "C5'"   64P   5  
64P  "C4'"   "C4'"   C  0  1  N  N  R   2.701  -18.768   3.324  -1.301  -1.432  -0.536  "C4'"   64P   6  
64P  "O4'"   "O4'"   O  0  1  N  N  N   3.243  -17.549   3.841  -0.209  -0.498  -0.675  "O4'"   64P   7  
64P  "C3'"   "C3'"   C  0  1  N  N  S   1.370  -18.895   4.067  -0.674  -2.604   0.262  "C3'"   64P   8  
64P  "O3'"   "O3'"   O  0  1  N  N  N   0.920  -20.222   4.056  -1.379  -3.823   0.015  "O3'"   64P   9  
64P  "C2'"   "C2'"   C  0  1  N  N  N   1.771  -18.459   5.460   0.757  -2.666  -0.324  "C2'"   64P  10  
64P  "C1'"   "C1'"   C  0  1  N  N  R   2.834  -17.398   5.187   0.973  -1.271  -0.942  "C1'"   64P  11  
64P  N1      N1      N  0  1  N  N  N   2.454  -15.927   5.409   2.138  -0.629  -0.327  N1      64P  12  
64P  C2      C2      C  0  1  N  N  N   3.192  -15.253   6.256   2.112  -0.323   0.980  C2      64P  13  
64P  O2      O2      O  0  1  N  N  N   4.121  -15.745   6.909   1.165  -0.679   1.654  O2      64P  14  
64P  N3      N3      N  0  1  N  N  N   2.903  -13.901   6.476   3.108   0.366   1.561  N3      64P  15  
64P  C4      C4      C  0  1  N  N  N   1.879  -13.172   5.848   4.049   0.981   0.821  C4      64P  16  
64P  O4      O4      O  0  1  N  N  N   1.685  -11.983   6.111   4.984   1.530   1.363  O4      64P  17  
64P  C5      C5      C  0  1  N  N  R   1.290  -13.840   4.627   3.938   0.988  -0.683  C5      64P  18  
64P  C5M     C5M     C  0  1  N  N  N   2.242  -13.500   3.476   5.332   1.137  -1.297  C5M     64P  19  
64P  C6      C6      C  0  1  N  N  N   1.161  -15.388   4.851   3.315  -0.334  -1.146  C6      64P  20  
64P  N5      N5      N  0  1  N  N  N  -0.083  -13.413   4.432   3.092   2.111  -1.108  N5      64P  21  
64P  "H5'"   "H5'"   H  0  1  N  N  N   2.147  -17.673   1.567  -2.078  -0.413   1.196  "H5'"   64P  22  
64P  "H5'A"  "H5'A"  H  0  0  N  N  N   1.992  -19.475   1.435  -3.216  -1.555   0.442  "H5'A"  64P  23  
64P  "H4'"   "H4'"   H  0  1  N  N  N   3.296  -19.680   3.482  -1.644  -1.770  -1.514  "H4'"   64P  24  
64P  "H3'"   "H3'"   H  0  1  N  N  N   0.544  -18.311   3.634  -0.650  -2.380   1.328  "H3'"   64P  25  
64P  "HO3'"  "HO3'"  H  0  0  N  Y  N   0.818  -20.515   3.158  -1.024  -4.586   0.492  "HO3'"  64P  26  
64P  "H2'"   "H2'"   H  0  1  N  N  N   0.918  -18.048   6.021   1.485  -2.850   0.467  "H2'"   64P  27  
64P  "H2'A"  "H2'A"  H  0  0  N  N  N   2.136  -19.287   6.085   0.823  -3.438  -1.091  "H2'A"  64P  28  
64P  "H1'"   "H1'"   H  0  1  N  N  N   3.616  -17.585   5.937   1.122  -1.362  -2.018  "H1'"   64P  29  
64P  HN3     HN3     H  0  1  N  N  N   3.474  -13.413   7.136   3.150   0.420   2.529  HN3     64P  30  
64P  H5M     H5M     H  0  1  N  N  N   1.671  -13.419   2.539   5.958   0.303  -0.983  H5M     64P  31  
64P  H5MA    H5MA    H  0  0  N  N  N   2.742  -12.543   3.685   5.251   1.142  -2.384  H5MA    64P  32  
64P  H5MB    H5MB    H  0  0  N  N  N   2.996  -14.295   3.377   5.778   2.073  -0.961  H5MB    64P  33  
64P  H6      H6      H  0  1  N  N  N   0.943  -15.880   3.892   4.042  -1.139  -1.039  H6      64P  34  
64P  H6A     H6A     H  0  1  N  N  N   0.345  -15.588   5.561   3.019  -0.249  -2.192  H6A     64P  35  
64P  HN5     HN5     H  0  1  N  N  N  -0.531  -13.315   5.320   3.483   2.992  -0.808  HN5     64P  36  
64P  HN5A    HN5A    H  0  0  N  N  N  -0.094  -12.535   3.954   2.950   2.099  -2.107  HN5A    64P  37  
64P  OP3     OP3     O  0  1  N  Y  N   2.873  -20.208  -0.515  -4.714   2.173  -1.152  OP3     64P  38  
64P  H1P     H1P     H  0  1  N  N  N   5.375  -19.226  -1.735  -3.066   2.597   1.150  H1P     64P  39  
64P  H3P     H3P     H  0  1  N  Y  N   2.672  -20.342  -1.434  -5.456   2.741  -0.907  H3P     64P  40  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
64P  P      OP2     DOUB  N  N   1  
64P  P      OP1     SING  N  N   2  
64P  P      "O5'"   SING  N  N   3  
64P  "O5'"  "C5'"   SING  N  N   4  
64P  "C5'"  "C4'"   SING  N  N   5  
64P  "C4'"  "O4'"   SING  N  N   6  
64P  "C4'"  "C3'"   SING  N  N   7  
64P  "O4'"  "C1'"   SING  N  N   8  
64P  "C3'"  "O3'"   SING  N  N   9  
64P  "C3'"  "C2'"   SING  N  N  10  
64P  "C2'"  "C1'"   SING  N  N  11  
64P  "C1'"  N1      SING  N  N  12  
64P  N1     C2      SING  N  N  13  
64P  N1     C6      SING  N  N  14  
64P  C2     O2      DOUB  N  N  15  
64P  C2     N3      SING  N  N  16  
64P  N3     C4      SING  N  N  17  
64P  C4     O4      DOUB  N  N  18  
64P  C4     C5      SING  N  N  19  
64P  C5     C5M     SING  N  N  20  
64P  C5     C6      SING  N  N  21  
64P  C5     N5      SING  N  N  22  
64P  "C5'"  "H5'"   SING  N  N  23  
64P  "C5'"  "H5'A"  SING  N  N  24  
64P  "C4'"  "H4'"   SING  N  N  25  
64P  "C3'"  "H3'"   SING  N  N  26  
64P  "O3'"  "HO3'"  SING  N  N  27  
64P  "C2'"  "H2'"   SING  N  N  28  
64P  "C2'"  "H2'A"  SING  N  N  29  
64P  "C1'"  "H1'"   SING  N  N  30  
64P  N3     HN3     SING  N  N  31  
64P  C5M    H5M     SING  N  N  32  
64P  C5M    H5MA    SING  N  N  33  
64P  C5M    H5MB    SING  N  N  34  
64P  C6     H6      SING  N  N  35  
64P  C6     H6A     SING  N  N  36  
64P  N5     HN5     SING  N  N  37  
64P  N5     HN5A    SING  N  N  38  
64P  P      OP3     SING  N  N  39  
64P  OP3    H3P     SING  N  N  40  
64P  OP1    H1P     SING  N  N  41  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
64P  SMILES            ACDLabs               10.04  "O=C1N(CC(C(=O)N1)(N)C)C2OC(C(O)C2)COP(=O)(O)O"  
64P  SMILES_CANONICAL  CACTVS                3.352  "C[C@@]1(N)CN([C@H]2C[C@H](O)[C@@H](CO[P](O)(O)=O)O2)C(=O)NC1=O"  
64P  SMILES            CACTVS                3.352  "C[C]1(N)CN([CH]2C[CH](O)[CH](CO[P](O)(O)=O)O2)C(=O)NC1=O"  
64P  SMILES_CANONICAL  "OpenEye OEToolkits"  1.6.1  "C[C@]1(CN(C(=O)NC1=O)[C@H]2C[C@@H]([C@H](O2)COP(=O)(O)O)O)N"  
64P  SMILES            "OpenEye OEToolkits"  1.6.1  "CC1(CN(C(=O)NC1=O)C2CC(C(O2)COP(=O)(O)O)O)N"  
64P  InChI             InChI                 1.03   "InChI=1S/C10H18N3O8P/c1-10(11)4-13(9(16)12-8(10)15)7-2-5(14)6(21-7)3-20-22(17,18)19/h5-7,14H,2-4,11H2,1H3,(H,12,15,16)(H2,17,18,19)/t5-,6+,7+,10+/m0/s1"  
64P  InChIKey          InChI                 1.03   ZCRHNITTYCCJRU-MPXCPUAZSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
64P  "SYSTEMATIC NAME"  ACDLabs               10.04  "5-aminothymidine 5'-(dihydrogen phosphate)"  
64P  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.6.1  "[(2R,3S,5R)-5-[(5R)-5-amino-5-methyl-2,4-dioxo-1,3-diazinan-1-yl]-3-hydroxy-oxolan-2-yl]methyl dihydrogen phosphate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
64P  "Create component"     2009-03-04  EBI   
64P  "Modify descriptor"    2011-06-04  RCSB  
64P  "Modify linking type"  2019-07-24  RCSB  
##
