data_TLN
# 
_chem_comp.id                                    TLN 
_chem_comp.name                                  "[(1R,3R,4R,7S)-7-HYDROXY-3-(THYMIN-1-YL)-2,5-DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN PHOSPHATE" 
_chem_comp.type                                  "RNA LINKING" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C11 H15 N2 O9 P" 
_chem_comp.mon_nstd_parent_comp_id               DU 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2001-01-04 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        350.219 
_chem_comp.one_letter_code                       U 
_chem_comp.three_letter_code                     TLN 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1HHX 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
TLN P      P    P 0 1 N N N -6.215 -9.738  1.168  0.975  -0.258 -4.245 P      TLN 1  
TLN OP1    O1P  O 0 1 N N N -5.754 -8.585  1.971  2.282  0.266  -3.792 OP1    TLN 2  
TLN OP2    O2P  O 0 1 N N N -6.322 -11.078 1.789  0.199  0.880  -5.078 OP2    TLN 3  
TLN OP3    O3P  O 0 1 N Y N -7.644 -9.363  0.526  1.210  -1.544 -5.185 OP3    TLN 4  
TLN "O5'"  O5*  O 0 1 N N N -5.291 -9.846  -0.142 0.094  -0.682 -2.966 "O5'"  TLN 5  
TLN "C5'"  C5*  C 0 1 N N N -5.257 -11.005 -0.954 -0.078 0.494  -2.175 "C5'"  TLN 6  
TLN "C4'"  C4*  C 0 1 N N R -4.545 -10.642 -2.258 -0.911 0.159  -0.937 "C4'"  TLN 7  
TLN "O4'"  O4*  O 0 1 N N N -5.343 -9.779  -3.063 -0.348 -0.830 -0.029 "O4'"  TLN 8  
TLN "C1'"  C1*  C 0 1 N N R -4.448 -9.176  -3.989 -1.103 -0.754 1.196  "C1'"  TLN 9  
TLN N1     N1   N 0 1 N N N -4.486 -7.675  -3.927 -0.213 -0.465 2.323  N1     TLN 10 
TLN C6     C6   C 0 1 N N N -4.861 -7.037  -2.764 1.005  0.112  2.093  C6     TLN 11 
TLN C5     C5   C 0 1 N N N -4.879 -5.681  -2.642 1.826  0.378  3.132  C5     TLN 12 
TLN C5M    C5M  C 0 1 N N N -5.222 -5.040  -1.301 3.172  1.013  2.898  C5M    TLN 13 
TLN C4     C4   C 0 1 N N N -4.558 -4.841  -3.790 1.407  0.048  4.443  C4     TLN 14 
TLN O4     O4   O 0 1 N N N -4.593 -3.612  -3.824 2.129  0.278  5.395  O4     TLN 15 
TLN N3     N3   N 0 1 N N N -4.203 -5.540  -4.935 0.196  -0.515 4.628  N3     TLN 16 
TLN C2     C2   C 0 1 N N N -4.120 -6.929  -5.055 -0.601 -0.770 3.575  C2     TLN 17 
TLN O2     O2   O 0 1 N N N -3.737 -7.444  -6.104 -1.689 -1.282 3.756  O2     TLN 18 
TLN "C3'"  C3*  C 0 1 N N S -3.225 -9.901  -2.074 -1.236 1.333  0.055  "C3'"  TLN 19 
TLN "C2'"  C2*  C 0 1 N N R -3.116 -9.811  -3.587 -2.112 0.418  0.989  "C2'"  TLN 20 
TLN "O2'"  O2*  O 0 1 N N N -3.169 -11.167 -4.025 -3.075 -0.114 0.036  "O2'"  TLN 21 
TLN "O3'"  O3*  O 0 1 N N N -2.206 -10.658 -1.442 -1.995 2.377  -0.557 "O3'"  TLN 22 
TLN "C6'"  C6*  C 0 1 N N N -4.107 -11.804 -3.161 -2.363 -0.353 -1.194 "C6'"  TLN 23 
TLN HOP2   2HOP H 0 0 N N N -6.618 -11.818 1.273  -0.645 0.498  -5.354 HOP2   TLN 24 
TLN HOP3   3HOP H 0 0 N N N -7.940 -10.103 0.010  1.740  -1.247 -5.937 HOP3   TLN 25 
TLN "H5'"  1H5* H 0 1 N N N -6.269 -11.347 -1.174 -0.591 1.255  -2.763 "H5'"  TLN 26 
TLN "H5''" 2H5* H 0 0 N N N -4.708 -11.792 -0.435 0.896  0.871  -1.866 "H5''" TLN 27 
TLN "H1'"  H1*  H 0 1 N N N -4.663 -9.547  -4.983 -1.639 -1.687 1.369  "H1'"  TLN 28 
TLN H6     H6   H 0 1 N N N -5.166 -7.663  -1.940 1.310  0.354  1.085  H6     TLN 29 
TLN H71    1H5M H 0 1 N N N -4.319 -4.619  -0.855 3.682  1.147  3.852  H71    TLN 30 
TLN H72    2H5M H 0 1 N N N -5.637 -5.770  -0.606 3.771  0.369  2.254  H72    TLN 31 
TLN H73    3H5M H 0 1 N N N -5.942 -4.232  -1.433 3.038  1.983  2.418  H73    TLN 32 
TLN H3     H3   H 0 1 N N N -3.921 -4.959  -5.719 -0.099 -0.741 5.524  H3     TLN 33 
TLN "H3'"  H3*  H 0 1 N N N -3.350 -8.930  -1.599 -0.347 1.714  0.558  "H3'"  TLN 34 
TLN "H2'"  1H2* H 0 1 N N N -2.256 -9.261  -3.955 -2.526 0.883  1.884  "H2'"  TLN 35 
TLN "HO3'" H3T  H 0 0 N Y N -1.384 -10.196 -1.327 -2.346 2.925  0.158  "HO3'" TLN 36 
TLN "H6'1" 1H6* H 0 0 N N N -4.951 -12.211 -3.719 -2.822 0.204  -2.010 "H6'1" TLN 37 
TLN "H6'2" 2H6* H 0 0 N N N -3.610 -12.581 -2.581 -2.352 -1.419 -1.423 "H6'2" TLN 38 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
TLN P     OP1    DOUB N N 1  
TLN P     OP2    SING N N 2  
TLN P     OP3    SING N N 3  
TLN P     "O5'"  SING N N 4  
TLN OP2   HOP2   SING N N 5  
TLN OP3   HOP3   SING N N 6  
TLN "O5'" "C5'"  SING N N 7  
TLN "C5'" "C4'"  SING N N 8  
TLN "C5'" "H5'"  SING N N 9  
TLN "C5'" "H5''" SING N N 10 
TLN "C4'" "O4'"  SING N N 11 
TLN "C4'" "C3'"  SING N N 12 
TLN "C4'" "C6'"  SING N N 13 
TLN "O4'" "C1'"  SING N N 14 
TLN "C1'" N1     SING N N 15 
TLN "C1'" "C2'"  SING N N 16 
TLN "C1'" "H1'"  SING N N 17 
TLN N1    C6     SING N N 18 
TLN N1    C2     SING N N 19 
TLN C6    C5     DOUB N N 20 
TLN C6    H6     SING N N 21 
TLN C5    C5M    SING N N 22 
TLN C5    C4     SING N N 23 
TLN C5M   H71    SING N N 24 
TLN C5M   H72    SING N N 25 
TLN C5M   H73    SING N N 26 
TLN C4    O4     DOUB N N 27 
TLN C4    N3     SING N N 28 
TLN N3    C2     SING N N 29 
TLN N3    H3     SING N N 30 
TLN C2    O2     DOUB N N 31 
TLN "C3'" "C2'"  SING N N 32 
TLN "C3'" "O3'"  SING N N 33 
TLN "C3'" "H3'"  SING N N 34 
TLN "C2'" "O2'"  SING N N 35 
TLN "C2'" "H2'"  SING N N 36 
TLN "O2'" "C6'"  SING N N 37 
TLN "O3'" "HO3'" SING N N 38 
TLN "C6'" "H6'1" SING N N 39 
TLN "C6'" "H6'2" SING N N 40 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
TLN SMILES           ACDLabs              10.04 "O=C1C(=CN(C(=O)N1)C3OC2(C(O)C3OC2)COP(=O)(O)O)C"                                                                                                              
TLN SMILES_CANONICAL CACTVS               3.341 "CC1=CN([C@@H]2O[C@]3(CO[C@@H]2[C@@H]3O)CO[P](O)(O)=O)C(=O)NC1=O"                                                                                              
TLN SMILES           CACTVS               3.341 "CC1=CN([CH]2O[C]3(CO[CH]2[CH]3O)CO[P](O)(O)=O)C(=O)NC1=O"                                                                                                     
TLN SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CC1=CN(C(=O)NC1=O)[C@H]2[C@H]3[C@@H]([C@@](O2)(CO3)COP(=O)(O)O)O"                                                                                             
TLN SMILES           "OpenEye OEToolkits" 1.5.0 "CC1=CN(C(=O)NC1=O)C2C3C(C(O2)(CO3)COP(=O)(O)O)O"                                                                                                              
TLN InChI            InChI                1.03  "InChI=1S/C11H15N2O9P/c1-5-2-13(10(16)12-8(5)15)9-6-7(14)11(22-9,3-20-6)4-21-23(17,18)19/h2,6-7,9,14H,3-4H2,1H3,(H,12,15,16)(H2,17,18,19)/t6-,7+,9-,11-/m1/s1" 
TLN InChIKey         InChI                1.03  BXKGBLDLIZEIJX-YRCORFKGSA-N                                                                                                                                    
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
TLN "SYSTEMATIC NAME" ACDLabs              10.04 "1-{2,5-anhydro-4-[(phosphonooxy)methyl]-alpha-L-lyxofuranosyl}-5-methylpyrimidine-2,4(1H,3H)-dione"                            
TLN "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(1R,4R,5R,7S)-7-hydroxy-5-(5-methyl-2,4-dioxo-pyrimidin-1-yl)-3,6-dioxabicyclo[2.2.1]heptan-1-yl]methyl dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
TLN "Create component"    2001-01-04 RCSB 
TLN "Modify linking type" 2011-06-04 RCSB 
TLN "Modify descriptor"   2011-06-04 RCSB 
# 
