data_JDN
#

_chem_comp.id                                   JDN
_chem_comp.name                                 "1~{H}-indol-5-ylboronic acid"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C8 H8 B N O2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-02-19
_chem_comp.pdbx_modified_date                   2019-09-13
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       160.966
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    JDN
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6QQR
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
JDN  O01  O1  O  0  1  N  N  N  -13.219   -8.334  23.918   3.554   0.867   0.003  O01  JDN   1  
JDN  B02  B1  B  0  1  N  N  N  -13.073   -9.580  24.583   2.616  -0.199  -0.000  B02  JDN   2  
JDN  O03  O2  O  0  1  N  N  N  -12.355  -10.599  23.916   3.069  -1.544  -0.004  O03  JDN   3  
JDN  C04  C1  C  0  1  Y  N  N  -12.848   -9.499  26.193   1.077   0.111  -0.001  C04  JDN   4  
JDN  C05  C2  C  0  1  Y  N  N  -13.170   -8.328  26.883   0.158  -0.933   0.001  C05  JDN   5  
JDN  C06  C3  C  0  1  Y  N  N  -12.943   -8.278  28.282  -1.204  -0.645   0.001  C06  JDN   6  
JDN  C07  C4  C  0  1  Y  N  N  -12.407   -9.370  28.934  -1.641   0.694  -0.001  C07  JDN   7  
JDN  C08  C5  C  0  1  Y  N  N  -12.074  -10.559  28.213  -0.702   1.725  -0.003  C08  JDN   8  
JDN  C09  C6  C  0  1  Y  N  N  -12.295  -10.608  26.855   0.631   1.438   0.002  C09  JDN   9  
JDN  N10  N1  N  0  1  Y  N  N  -12.283   -9.072  30.268  -3.014   0.671  -0.001  N10  JDN  10  
JDN  C11  C7  C  0  1  Y  N  N  -12.720   -7.838  30.512  -3.461  -0.623   0.001  C11  JDN  11  
JDN  C12  C8  C  0  1  Y  N  N  -13.145   -7.286  29.304  -2.418  -1.467   0.002  C12  JDN  12  
JDN  H1   H1  H  0  1  N  N  N  -13.717   -7.739  24.466   4.477   0.578   0.003  H1   JDN  13  
JDN  H2   H2  H  0  1  N  N  N  -12.328  -11.377  24.461   4.032  -1.635  -0.003  H2   JDN  14  
JDN  H3   H3  H  0  1  N  N  N  -13.584   -7.478  26.361   0.499  -1.958   0.002  H3   JDN  15  
JDN  H4   H4  H  0  1  N  N  N  -11.653  -11.410  28.728  -1.032   2.753  -0.005  H4   JDN  16  
JDN  H5   H5  H  0  1  N  N  N  -12.043  -11.499  26.299   1.350   2.244   0.005  H5   JDN  17  
JDN  H6   H6  H  0  1  N  N  N  -11.916   -9.694  30.960  -3.584   1.457  -0.002  H6   JDN  18  
JDN  H7   H7  H  0  1  N  N  N  -12.741   -7.351  31.476  -4.499  -0.920   0.001  H7   JDN  19  
JDN  H8   H8  H  0  1  N  N  N  -13.551   -6.295  29.162  -2.464  -2.546   0.004  H8   JDN  20  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
JDN  O03  B02  SING  N  N   1  
JDN  O01  B02  SING  N  N   2  
JDN  B02  C04  SING  N  N   3  
JDN  C04  C09  DOUB  Y  N   4  
JDN  C04  C05  SING  Y  N   5  
JDN  C09  C08  SING  Y  N   6  
JDN  C05  C06  DOUB  Y  N   7  
JDN  C08  C07  DOUB  Y  N   8  
JDN  C06  C07  SING  Y  N   9  
JDN  C06  C12  SING  Y  N  10  
JDN  C07  N10  SING  Y  N  11  
JDN  C12  C11  DOUB  Y  N  12  
JDN  N10  C11  SING  Y  N  13  
JDN  O01  H1   SING  N  N  14  
JDN  O03  H2   SING  N  N  15  
JDN  C05  H3   SING  N  N  16  
JDN  C08  H4   SING  N  N  17  
JDN  C09  H5   SING  N  N  18  
JDN  N10  H6   SING  N  N  19  
JDN  C11  H7   SING  N  N  20  
JDN  C12  H8   SING  N  N  21  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
JDN  InChI             InChI                 1.03   "InChI=1S/C8H8BNO2/c11-9(12)7-1-2-8-6(5-7)3-4-10-8/h1-5,10-12H"  
JDN  InChIKey          InChI                 1.03   VHADYSUJZAPXOW-UHFFFAOYSA-N  
JDN  SMILES_CANONICAL  CACTVS                3.385  "OB(O)c1ccc2[nH]ccc2c1"  
JDN  SMILES            CACTVS                3.385  "OB(O)c1ccc2[nH]ccc2c1"  
JDN  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "B(c1ccc2c(c1)cc[nH]2)(O)O"  
JDN  SMILES            "OpenEye OEToolkits"  2.0.7  "B(c1ccc2c(c1)cc[nH]2)(O)O"  
#
_pdbx_chem_comp_identifier.comp_id          JDN
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "1~{H}-indol-5-ylboronic acid"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
JDN  "Create component"  2019-02-19  RCSB  
JDN  "Initial release"   2019-09-18  RCSB  
##
