data_YYM
#

_chem_comp.id                                   YYM
_chem_comp.name                                 alpha-D-ribopyranose
_chem_comp.type                                 "D-saccharide, alpha linking"
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C5 H10 O5"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "alpha-D-ribose; D-ribose; ribose"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2012-12-17
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       150.130
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    YYM
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3MBV
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  YYM  alpha-D-ribose  PDB  ?  
2  YYM  D-ribose        PDB  ?  
3  YYM  ribose          PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
YYM  C1   C1   C  0  1  N  N  S  16.569  29.861  42.734  -1.452  -0.069  -0.524  C1   YYM   1  
YYM  C2   C2   C  0  1  N  N  R  17.676  29.314  41.786  -0.289  -1.030  -0.269  C2   YYM   2  
YYM  C3   C3   C  0  1  N  N  R  17.485  29.694  40.294   1.000  -0.422  -0.831  C3   YYM   3  
YYM  C4   C4   C  0  1  N  N  R  16.602  30.930  40.074   1.227   0.950  -0.187  C4   YYM   4  
YYM  C5   C5   C  0  1  N  N  N  16.534  31.801  41.323   0.005   1.835  -0.446  C5   YYM   5  
YYM  O1   O1   O  0  1  N  Y  N  17.116  30.152  44.031  -2.648  -0.604   0.047  O1   YYM   6  
YYM  O2   O2   O  0  1  N  N  N  19.010  29.627  42.252  -0.144  -1.241   1.137  O2   YYM   7  
YYM  O3   O3   O  0  1  N  N  N  18.758  29.896  39.708   2.103  -1.279  -0.532  O3   YYM   8  
YYM  O4   O4   O  0  1  N  N  N  17.059  31.677  38.959   1.412   0.791   1.221  O4   YYM   9  
YYM  O5   O5   O  0  1  N  N  N  15.799  30.979  42.234  -1.163   1.196   0.074  O5   YYM  10  
YYM  H1   H1   H  0  1  N  N  N  15.863  29.029  42.869  -1.588   0.060  -1.598  H1   YYM  11  
YYM  HO1  H1O  H  0  1  N  Y  N  17.617  29.406  44.339  -3.427  -0.046  -0.076  HO1  YYM  12  
YYM  H2   H2   H  0  1  N  N  N  17.579  28.219  41.824  -0.488  -1.982  -0.762  H2   YYM  13  
YYM  HO2  H2O  H  0  1  N  Y  N  19.649  29.274  41.644  -0.925  -1.621   1.561  HO2  YYM  14  
YYM  H3   H3   H  0  1  N  N  N  16.993  28.843  39.800   0.908  -0.308  -1.911  H3   YYM  15  
YYM  HO3  H3O  H  0  1  N  Y  N  18.653  30.129  38.793   2.953  -0.954  -0.859  HO3  YYM  16  
YYM  H4   H4   H  0  1  N  N  N  15.583  30.571  39.867   2.112   1.414  -0.621  H4   YYM  17  
YYM  HO4  H4O  H  0  1  N  Y  N  16.502  32.437  38.837   1.561   1.622   1.694  HO4  YYM  18  
YYM  H52  H51  H  0  1  N  N  N  16.004  32.744  41.122   0.142   2.798   0.046  H52  YYM  19  
YYM  H51  H52  H  0  1  N  N  N  17.540  32.021  41.709  -0.112   1.988  -1.519  H51  YYM  20  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
YYM  C1  O1   SING  N  N   1  
YYM  C1  O5   SING  N  N   2  
YYM  C1  C2   SING  N  N   3  
YYM  C1  H1   SING  N  N   4  
YYM  C2  C3   SING  N  N   5  
YYM  C2  O2   SING  N  N   6  
YYM  C2  H2   SING  N  N   7  
YYM  C3  O3   SING  N  N   8  
YYM  C3  H3   SING  N  N   9  
YYM  C3  C4   SING  N  N  10  
YYM  C4  O4   SING  N  N  11  
YYM  C4  H4   SING  N  N  12  
YYM  C4  C5   SING  N  N  13  
YYM  C5  H51  SING  N  N  14  
YYM  C5  H52  SING  N  N  15  
YYM  C5  O5   SING  N  N  16  
YYM  O1  HO1  SING  N  N  17  
YYM  O2  HO2  SING  N  N  18  
YYM  O3  HO3  SING  N  N  19  
YYM  O4  HO4  SING  N  N  20  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
YYM  SMILES            ACDLabs               12.01  "OC1C(O)COC(O)C1O"  
YYM  InChI             InChI                 1.03   "InChI=1S/C5H10O5/c6-2-1-10-5(9)4(8)3(2)7/h2-9H,1H2/t2-,3-,4-,5+/m1/s1"  
YYM  InChIKey          InChI                 1.03   SRBFZHDQGSBBOR-AIHAYLRMSA-N  
YYM  SMILES_CANONICAL  CACTVS                3.370  "O[C@@H]1CO[C@H](O)[C@H](O)[C@@H]1O"  
YYM  SMILES            CACTVS                3.370  "O[CH]1CO[CH](O)[CH](O)[CH]1O"  
YYM  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "C1[C@H]([C@H]([C@H]([C@H](O1)O)O)O)O"  
YYM  SMILES            "OpenEye OEToolkits"  1.7.6  "C1C(C(C(C(O1)O)O)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
YYM  "SYSTEMATIC NAME"                      ACDLabs               12.01  alpha-D-ribopyranose  
YYM  "SYSTEMATIC NAME"                      "OpenEye OEToolkits"  1.7.6  "(2S,3R,4R,5R)-oxane-2,3,4,5-tetrol"  
YYM  "CONDENSED IUPAC CARBOHYDRATE SYMBOL"  GMML                  1.0    DRibpa  
YYM  "COMMON NAME"                          GMML                  1.0    a-D-ribopyranose  
YYM  "IUPAC CARBOHYDRATE SYMBOL"            PDB-CARE              1.0    a-D-Ribp  
YYM  "SNFG CARBOHYDRATE SYMBOL"             GMML                  1.0    Rib  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
YYM  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
YYM  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
YYM  "CARBOHYDRATE ANOMER"                  alpha     PDB  ?  
YYM  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
YYM  "Create component"          2012-12-17  RCSB  
YYM  "Modify atom id"            2013-02-12  RCSB  
YYM  "Other modification"        2019-08-12  RCSB  
YYM  "Other modification"        2019-12-19  RCSB  
YYM  "Other modification"        2020-06-03  RCSB  
YYM  "Other modification"        2020-06-10  RCSB  
YYM  "Other modification"        2020-07-03  RCSB  
YYM  "Modify atom id"            2020-07-17  RCSB  
YYM  "Modify component atom id"  2020-07-17  RCSB  
YYM  "Initial release"           2020-07-29  RCSB  
##
