data_YMM
# 
_chem_comp.id                                    YMM 
_chem_comp.name                                  "(1S,2S)-1-hydroxy-2-((S)-4-methyl-2-(((((1s,4S)-4-propylcyclohexyl)oxy)carbonyl)amino)pentanamido)-3-((S)-2-oxopyrrolidin-3-yl)propane-1-sulfonic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C23 H41 N3 O8 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-03-12 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        519.652 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YMM 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7LZY 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YMM C1  C1  C 0 1 N N N N N N 10.583 7.567  22.133 2.360  -0.007 0.238  C1  YMM 1  
YMM C10 C2  C 0 1 N N S N N N 7.198  6.127  19.073 -4.285 2.264  -0.448 C10 YMM 2  
YMM C11 C3  C 0 1 N N N N N N 6.691  6.974  17.923 -5.344 2.889  -1.329 C11 YMM 3  
YMM C12 C4  C 0 1 N N N N N N 5.506  7.655  19.809 -4.597 4.585  0.071  C12 YMM 4  
YMM C13 C5  C 0 1 N N N N N N 6.115  6.305  20.131 -4.125 3.265  0.720  C13 YMM 5  
YMM C14 C6  C 0 1 N N S N N N 8.026  2.367  19.614 -4.185 -0.998 1.590  C14 YMM 6  
YMM C15 C7  C 0 1 N N N N N N 10.430 9.920  22.534 4.720  0.318  0.383  C15 YMM 7  
YMM C16 C8  C 0 1 N N N N N N 11.332 10.847 23.315 5.373  -0.986 -0.079 C16 YMM 8  
YMM C17 C9  C 0 1 N N N N N N 11.114 12.300 22.895 6.710  -0.675 -0.756 C17 YMM 9  
YMM C18 C10 C 0 1 N N N N N N 9.658  12.722 23.060 7.632  0.034  0.238  C18 YMM 10 
YMM C19 C11 C 0 1 N N N N N N 9.436  14.173 22.646 8.968  0.345  -0.438 C19 YMM 11 
YMM C2  C12 C 0 1 N N S N N N 10.813 5.147  22.085 -0.037 -0.307 -0.086 C2  YMM 12 
YMM C20 C13 C 0 1 N N N N N N 10.102 15.214 23.530 9.934  0.940  0.589  C20 YMM 13 
YMM C21 C14 C 0 1 N N N N N N 9.531  16.595 23.315 11.270 1.252  -0.088 C21 YMM 14 
YMM C22 C15 C 0 1 N N N N N N 8.751  11.764 22.297 6.978  1.337  0.701  C22 YMM 15 
YMM C23 C16 C 0 1 N N N N N N 8.979  10.308 22.705 5.642  1.026  1.377  C23 YMM 16 
YMM C3  C17 C 0 1 N N N N N N 11.448 4.092  22.985 -0.171 -1.693 -0.720 C3  YMM 17 
YMM C4  C18 C 0 1 N N N N N N 12.957 4.249  23.164 1.011  -1.942 -1.658 C4  YMM 18 
YMM C5  C19 C 0 1 N N N N N N 13.695 3.828  21.903 0.944  -3.373 -2.196 C5  YMM 19 
YMM C6  C20 C 0 1 N N N N N N 13.451 3.451  24.356 0.952  -0.955 -2.826 C6  YMM 20 
YMM C7  C21 C 0 1 N N N N N N 9.396  4.752  21.684 -1.261 -0.012 0.741  C7  YMM 21 
YMM C8  C22 C 0 1 N N S N N N 7.943  3.854  19.912 -3.667 0.299  0.965  C8  YMM 22 
YMM C9  C23 C 0 1 N N N N N N 7.520  4.681  18.701 -4.753 0.904  0.073  C9  YMM 23 
YMM N1  N1  N 0 1 N N N N N N 10.849 6.428  22.761 1.151  -0.276 0.771  N1  YMM 24 
YMM N2  N2  N 0 1 N N N N N N 9.227  4.332  20.427 -2.477 0.012  0.161  N2  YMM 25 
YMM N3  N3  N 0 1 N N N N N N 5.692  7.734  18.364 -5.502 4.186  -1.013 N3  YMM 26 
YMM O1  O1  O 0 1 N N N N N N 10.372 7.706  20.943 2.463  0.213  -0.953 O1  YMM 27 
YMM O2  O2  O 0 1 N N N N N N 7.148  6.973  16.770 -5.960 2.305  -2.195 O2  YMM 28 
YMM O3  O3  O 0 1 N N N N N N 6.749  1.832  19.322 -5.410 -0.739 2.279  O3  YMM 29 
YMM O4  O4  O 0 1 N N N N N N 8.477  4.835  22.492 -1.152 0.203  1.930  O4  YMM 30 
YMM O5  O5  O 0 1 N N N N N N 10.605 8.563  23.042 3.451  0.022  1.025  O5  YMM 31 
YMM H1  H1  H 0 1 N N N N N N 8.120  6.590  19.454 -3.347 2.161  -0.993 H1  YMM 32 
YMM H2  H2  H 0 1 N N N N N N 6.038  8.467  20.326 -5.129 5.195  0.801  H2  YMM 33 
YMM H3  H3  H 0 1 N N N N N N 4.440  7.687  20.077 -3.744 5.134  -0.329 H3  YMM 34 
YMM H4  H4  H 0 1 N N N N N N 5.361  5.508  20.056 -4.766 2.991  1.559  H4  YMM 35 
YMM H5  H5  H 0 1 N N N N N N 6.551  6.304  21.141 -3.083 3.335  1.034  H5  YMM 36 
YMM S1  S1  S 0 1 N Y N N N N 8.690  2.196  18.793 -4.472 -2.226 0.285  S1  YMM 37 
YMM H7  H7  H 0 1 N N N N N N 8.369  1.893  20.545 -3.447 -1.383 2.294  H7  YMM 38 
YMM H8  H8  H 0 1 N N N N N N 10.697 9.963  21.468 4.549  0.964  -0.478 H8  YMM 39 
YMM H9  H9  H 0 1 N N N N N N 11.111 10.745 24.388 5.544  -1.632 0.782  H9  YMM 40 
YMM H10 H10 H 0 1 N N N N N N 12.380 10.571 23.128 4.716  -1.491 -0.788 H10 YMM 41 
YMM H11 H11 H 0 1 N N N N N N 11.400 12.413 21.839 7.176  -1.603 -1.085 H11 YMM 42 
YMM H12 H12 H 0 1 N N N N N N 11.746 12.950 23.518 6.539  -0.029 -1.617 H12 YMM 43 
YMM H13 H13 H 0 1 N N N N N N 9.407  12.639 24.128 7.803  -0.612 1.099  H13 YMM 44 
YMM H14 H14 H 0 1 N N N N N N 9.824  14.297 21.624 9.392  -0.572 -0.846 H14 YMM 45 
YMM H15 H15 H 0 1 N N N N N N 8.353  14.366 22.653 8.809  1.061  -1.245 H15 YMM 46 
YMM H16 H16 H 0 1 N N N N N N 11.416 5.214  21.168 0.061  0.443  -0.871 H16 YMM 47 
YMM H17 H17 H 0 1 N N N N N N 9.956  14.930 24.583 9.510  1.858  0.997  H17 YMM 48 
YMM H18 H18 H 0 1 N N N N N N 11.178 15.236 23.302 10.093 0.224  1.395  H18 YMM 49 
YMM H19 H19 H 0 1 N N N N N N 10.043 17.311 23.975 11.958 1.676  0.644  H19 YMM 50 
YMM H20 H20 H 0 1 N N N N N N 9.678  16.893 22.266 11.694 0.334  -0.495 H20 YMM 51 
YMM H21 H21 H 0 1 N N N N N N 8.456  16.587 23.547 11.111 1.968  -0.894 H21 YMM 52 
YMM H22 H22 H 0 1 N N N N N N 8.953  11.866 21.220 7.635  1.842  1.409  H22 YMM 53 
YMM H23 H23 H 0 1 N N N N N N 7.703  12.030 22.501 6.808  1.984  -0.161 H23 YMM 54 
YMM H24 H24 H 0 1 N N N N N N 8.694  10.181 23.760 5.176  1.955  1.707  H24 YMM 55 
YMM H25 H25 H 0 1 N N N N N N 8.355  9.656  22.076 5.812  0.380  2.238  H25 YMM 56 
YMM H26 H26 H 0 1 N N N N N N 10.975 4.154  23.976 -0.180 -2.452 0.063  H26 YMM 57 
YMM H27 H27 H 0 1 N N N N N N 11.254 3.102  22.547 -1.101 -1.745 -1.286 H27 YMM 58 
YMM H28 H28 H 0 1 N N N N N N 13.171 5.312  23.349 1.944  -1.803 -1.112 H28 YMM 59 
YMM H29 H29 H 0 1 N N N N N N 14.778 3.949  22.054 0.011  -3.512 -2.742 H29 YMM 60 
YMM H30 H30 H 0 1 N N N N N N 13.471 2.774  21.682 1.786  -3.550 -2.864 H30 YMM 61 
YMM H31 H31 H 0 1 N N N N N N 13.370 4.456  21.061 0.986  -4.076 -1.364 H31 YMM 62 
YMM H32 H32 H 0 1 N N N N N N 12.908 3.766  25.259 1.000  0.064  -2.443 H32 YMM 63 
YMM H33 H33 H 0 1 N N N N N N 13.275 2.380  24.178 1.795  -1.133 -3.495 H33 YMM 64 
YMM H34 H34 H 0 1 N N N N N N 14.528 3.628  24.495 0.019  -1.094 -3.373 H34 YMM 65 
YMM H35 H35 H 0 1 N N N N N N 7.182  3.996  20.693 -3.411 1.005  1.755  H35 YMM 66 
YMM H36 H36 H 0 1 N N N N N N 6.625  4.223  18.254 -5.669 1.031  0.650  H36 YMM 67 
YMM H37 H37 H 0 1 N N N N N N 8.339  4.678  17.967 -4.943 0.238  -0.769 H37 YMM 68 
YMM H38 H38 H 0 1 N N N N N N 11.082 6.455  23.733 1.068  -0.448 1.722  H38 YMM 69 
YMM H39 H39 H 0 1 N N N N N N 10.014 4.345  19.810 -2.564 -0.160 -0.790 H39 YMM 70 
YMM H40 H40 H 0 1 N N N N N N 5.126  8.302  17.766 -6.132 4.782  -1.447 H40 YMM 71 
YMM H41 H41 H 0 1 N N N N N N 6.828  0.903  19.140 -6.114 -0.395 1.713  H41 YMM 72 
YMM O6  O6  O 0 1 N Y N N N N ?      ?      ?      -5.489 -1.781 -0.603 O6  YMM 73 
YMM O7  O7  O 0 1 N Y N N N N ?      ?      ?      -3.238 -2.728 -0.207 O7  YMM 74 
YMM O8  O8  O 0 1 N Y N N N N ?      ?      ?      -5.098 -3.409 1.009  O8  YMM 75 
YMM H6  H6  H 0 1 N Y N N N N ?      ?      ?      -5.311 -4.155 0.431  H6  YMM 76 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YMM O2  C11 DOUB N N 1  
YMM C11 N3  SING N N 2  
YMM C11 C10 SING N N 3  
YMM N3  C12 SING N N 4  
YMM C9  C10 SING N N 5  
YMM C9  C8  SING N N 6  
YMM C10 C13 SING N N 7  
YMM O3  C14 SING N N 8  
YMM C14 C8  SING N N 9  
YMM C12 C13 SING N N 10 
YMM C8  N2  SING N N 11 
YMM N2  C7  SING N N 12 
YMM O1  C1  DOUB N N 13 
YMM C7  C2  SING N N 14 
YMM C7  O4  DOUB N N 15 
YMM C5  C4  SING N N 16 
YMM C2  N1  SING N N 17 
YMM C2  C3  SING N N 18 
YMM C1  N1  SING N N 19 
YMM C1  O5  SING N N 20 
YMM C22 C23 SING N N 21 
YMM C22 C18 SING N N 22 
YMM C15 C23 SING N N 23 
YMM C15 O5  SING N N 24 
YMM C15 C16 SING N N 25 
YMM C19 C18 SING N N 26 
YMM C19 C20 SING N N 27 
YMM C17 C18 SING N N 28 
YMM C17 C16 SING N N 29 
YMM C3  C4  SING N N 30 
YMM C4  C6  SING N N 31 
YMM C21 C20 SING N N 32 
YMM C10 H1  SING N N 33 
YMM C12 H2  SING N N 34 
YMM C12 H3  SING N N 35 
YMM C13 H4  SING N N 36 
YMM C13 H5  SING N N 37 
YMM C14 S1  SING N N 38 
YMM C14 H7  SING N N 39 
YMM C15 H8  SING N N 40 
YMM C16 H9  SING N N 41 
YMM C16 H10 SING N N 42 
YMM C17 H11 SING N N 43 
YMM C17 H12 SING N N 44 
YMM C18 H13 SING N N 45 
YMM C19 H14 SING N N 46 
YMM C19 H15 SING N N 47 
YMM C2  H16 SING N N 48 
YMM C20 H17 SING N N 49 
YMM C20 H18 SING N N 50 
YMM C21 H19 SING N N 51 
YMM C21 H20 SING N N 52 
YMM C21 H21 SING N N 53 
YMM C22 H22 SING N N 54 
YMM C22 H23 SING N N 55 
YMM C23 H24 SING N N 56 
YMM C23 H25 SING N N 57 
YMM C3  H26 SING N N 58 
YMM C3  H27 SING N N 59 
YMM C4  H28 SING N N 60 
YMM C5  H29 SING N N 61 
YMM C5  H30 SING N N 62 
YMM C5  H31 SING N N 63 
YMM C6  H32 SING N N 64 
YMM C6  H33 SING N N 65 
YMM C6  H34 SING N N 66 
YMM C8  H35 SING N N 67 
YMM C9  H36 SING N N 68 
YMM C9  H37 SING N N 69 
YMM N1  H38 SING N N 70 
YMM N2  H39 SING N N 71 
YMM N3  H40 SING N N 72 
YMM O3  H41 SING N N 73 
YMM S1  O6  DOUB N N 74 
YMM S1  O7  DOUB N N 75 
YMM S1  O8  SING N N 76 
YMM O8  H6  SING N N 77 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YMM SMILES           ACDLabs              12.01 "CC(C)CC(NC(=O)OC1CCC(CCC)CC1)C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O"                                                                                                                                                                
YMM InChI            InChI                1.03  "InChI=1S/C23H41N3O8S/c1-4-5-15-6-8-17(9-7-15)34-23(30)26-18(12-14(2)3)21(28)25-19(22(29)35(31,32)33)13-16-10-11-24-20(16)27/h14-19,22,29H,4-13H2,1-3H3,(H,24,27)(H,25,28)(H,26,30)(H,31,32,33)/t15-,16-,17-,18-,19-,22-/m0/s1" 
YMM InChIKey         InChI                1.03  VCQYBHSDNWQLAS-LXYCOOOUSA-N                                                                                                                                                                                                     
YMM SMILES_CANONICAL CACTVS               3.385 "CCC[C@@H]1CC[C@H](CC1)OC(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](C[C@@H]2CCNC2=O)[C@@H](O)[S](O)(=O)=O"                                                                                                                                 
YMM SMILES           CACTVS               3.385 "CCC[CH]1CC[CH](CC1)OC(=O)N[CH](CC(C)C)C(=O)N[CH](C[CH]2CCNC2=O)[CH](O)[S](O)(=O)=O"                                                                                                                                            
YMM SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCC1CCC(CC1)OC(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](C[C@@H]2CCNC2=O)C(O)S(=O)(=O)O"                                                                                                                                                 
YMM SMILES           "OpenEye OEToolkits" 2.0.7 "CCCC1CCC(CC1)OC(=O)NC(CC(C)C)C(=O)NC(CC2CCNC2=O)C(O)S(=O)(=O)O"                                                                                                                                                                
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YMM "SYSTEMATIC NAME" ACDLabs              12.01 "(1S,2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]-2-{[N-({[(1s,4S)-4-propylcyclohexyl]oxy}carbonyl)-L-leucyl]amino}propane-1-sulfonic acid"                           
YMM "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-2-[[(2~{S})-4-methyl-2-[(4-propylcyclohexyl)oxycarbonylamino]pentanoyl]amino]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YMM "Create component" 2021-03-12 RCSB 
YMM "Initial release"  2021-03-24 RCSB 
YMM "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            YMM 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C14 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
