data_IRM
# 
_chem_comp.id                                    IRM 
_chem_comp.name                                  1,2-Dihydro-psi,psi-caroten-1-ol 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C40 H58 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "Rhodopin; (6~{E},8~{E},10~{E},12~{E},14~{E},16~{E},18~{E},20~{E},22~{E},24~{E},26~{E})-2,6,10,14,19,23,27,31-octamethyldotriaconta-6,8,10,12,14,16,18,20,22,24,26,30-dodecaen-2-ol" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-04-07 
_chem_comp.pdbx_modified_date                    2022-10-05 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        554.888 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     IRM 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7ZCU 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
IRM C1  C1  C 0 1 N N N 67.003 71.324 66.147 -15.758 0.214  -2.037 C1  IRM 1  
IRM C10 C2  C 0 1 N N N 67.516 72.849 76.691 -6.052  0.348  0.724  C10 IRM 2  
IRM C11 C3  C 0 1 N N N 67.305 72.738 78.096 -4.804  -0.268 0.889  C11 IRM 3  
IRM C12 C4  C 0 1 N N N 66.873 73.761 78.838 -3.648  0.441  0.643  C12 IRM 4  
IRM C13 C5  C 0 1 N N N 66.667 73.792 80.275 -2.402  -0.174 0.808  C13 IRM 5  
IRM C14 C6  C 0 1 N N N 66.224 74.938 80.840 -1.245  0.535  0.563  C14 IRM 6  
IRM C15 C7  C 0 1 N N N 66.065 75.234 82.222 0.000   -0.080 0.728  C15 IRM 7  
IRM C16 C8  C 0 1 N N N 65.669 76.450 82.636 1.157   0.629  0.482  C16 IRM 8  
IRM C17 C9  C 0 1 N N N 65.607 76.892 83.984 2.403   0.015  0.647  C17 IRM 9  
IRM C18 C10 C 0 1 N N N 65.335 78.145 84.415 3.559   0.724  0.401  C18 IRM 10 
IRM C19 C11 C 0 1 N N N 65.599 78.504 85.795 4.805   0.109  0.566  C19 IRM 11 
IRM C2  C12 C 0 1 N N N 68.101 71.249 67.204 -15.217 0.524  -0.640 C2  IRM 12 
IRM C20 C13 C 0 1 N N N 65.632 79.744 86.287 5.961   0.817  0.320  C20 IRM 13 
IRM C21 C14 C 0 1 N N N 65.940 80.080 87.633 7.209   0.201  0.485  C21 IRM 14 
IRM C22 C15 C 0 1 N N N 66.121 81.318 88.149 8.354   0.904  0.242  C22 IRM 15 
IRM C23 C16 C 0 1 N N N 66.382 81.464 89.569 9.606   0.286  0.408  C23 IRM 16 
IRM C24 C17 C 0 1 N N N 66.631 82.600 90.223 10.746  0.985  0.165  C24 IRM 17 
IRM C25 C18 C 0 1 N N N 66.852 82.656 91.624 12.008  0.362  0.332  C25 IRM 18 
IRM C26 C19 C 0 1 N N N 67.135 83.771 92.308 13.129  1.050  0.094  C26 IRM 19 
IRM C27 C20 C 0 1 N N N 67.245 83.759 93.810 14.472  0.387  0.272  C27 IRM 20 
IRM C28 C21 C 0 1 N N N 68.689 83.958 94.286 14.953  -0.158 -1.074 C28 IRM 21 
IRM C29 C22 C 0 1 N N N 68.789 83.833 95.775 16.295  -0.820 -0.897 C29 IRM 22 
IRM C3  C23 C 0 1 N N N 67.637 71.234 68.656 -13.855 -0.148 -0.460 C3  IRM 23 
IRM C30 C24 C 0 1 N N N 65.831 70.424 66.506 -17.059 0.986  -2.263 C30 IRM 24 
IRM C31 C25 C 0 1 N N N 66.538 72.758 65.938 -14.727 0.633  -3.088 C31 IRM 25 
IRM C33 C26 C 0 1 N N N 68.486 69.444 71.124 -11.894 -1.938 1.561  C33 IRM 26 
IRM C34 C27 C 0 1 N N N 68.205 70.473 76.267 -7.119  -1.791 1.414  C34 IRM 27 
IRM C35 C28 C 0 1 N N N 66.985 72.554 81.065 -2.324  -1.612 1.255  C35 IRM 28 
IRM C36 C29 C 0 1 N N N 64.864 79.229 83.490 3.481   2.161  -0.046 C36 IRM 29 
IRM C37 C30 C 0 1 N N N 66.103 82.563 87.307 8.276   2.341  -0.204 C37 IRM 30 
IRM C38 C31 C 0 1 N N N 67.415 85.092 91.650 13.052  2.487  -0.352 C38 IRM 31 
IRM C39 C32 C 0 1 N N N 69.886 83.669 96.494 16.450  -2.081 -1.214 C39 IRM 32 
IRM C4  C33 C 0 1 N N N 68.788 71.472 69.620 -13.314 0.162  0.938  C4  IRM 33 
IRM C40 C34 C 0 1 N N N 69.872 83.572 97.989 15.259  -2.905 -1.630 C40 IRM 34 
IRM C41 C35 C 0 1 N N N 71.242 83.535 95.871 17.820  -2.708 -1.162 C41 IRM 35 
IRM C5  C36 C 0 1 N N N 68.540 70.940 71.009 -11.972 -0.500 1.115  C5  IRM 36 
IRM C6  C37 C 0 1 N N N 68.366 71.759 72.054 -10.851 0.187  0.877  C6  IRM 37 
IRM C7  C38 C 0 1 N N N 68.219 71.341 73.409 -9.589  -0.436 1.044  C7  IRM 38 
IRM C8  C39 C 0 1 N N N 68.004 72.192 74.416 -8.448  0.263  0.802  C8  IRM 39 
IRM C9  C40 C 0 1 N N N 67.894 71.876 75.829 -7.197  -0.354 0.967  C9  IRM 40 
IRM O32 O1  O 0 1 N N N 67.551 70.853 64.902 -16.010 -1.188 -2.150 O32 IRM 41 
IRM H1  H1  H 0 1 N N N 67.355 73.827 76.262 -6.107  1.378  0.404  H1  IRM 42 
IRM H2  H2  H 0 1 N N N 67.502 71.792 78.578 -4.748  -1.298 1.209  H2  IRM 43 
IRM H3  H3  H 0 1 N N N 66.650 74.674 78.306 -3.704  1.471  0.324  H3  IRM 44 
IRM H4  H4  H 0 1 N N N 65.957 75.729 80.155 -1.301  1.565  0.243  H4  IRM 45 
IRM H5  H5  H 0 1 N N N 66.267 74.466 82.954 0.056   -1.110 1.047  H5  IRM 46 
IRM H6  H6  H 0 1 N N N 65.371 77.155 81.874 1.101   1.659  0.162  H6  IRM 47 
IRM H7  H7  H 0 1 N N N 65.797 76.150 84.745 2.458   -1.015 0.966  H7  IRM 48 
IRM H8  H8  H 0 1 N N N 65.786 77.696 86.486 4.861   -0.921 0.886  H8  IRM 49 
IRM H9  H9  H 0 1 N N N 68.676 70.328 67.026 -15.109 1.602  -0.524 H9  IRM 50 
IRM H10 H10 H 0 1 N N N 68.756 72.122 67.070 -15.912 0.146  0.110  H10 IRM 51 
IRM H11 H11 H 0 1 N N N 65.407 80.555 85.610 5.905   1.847  0.000  H11 IRM 52 
IRM H12 H12 H 0 1 N N N 66.041 79.254 88.322 7.265   -0.829 0.805  H12 IRM 53 
IRM H13 H13 H 0 1 N N N 66.374 80.559 90.158 9.661   -0.744 0.727  H13 IRM 54 
IRM H14 H14 H 0 1 N N N 66.666 83.521 89.660 10.690  2.015  -0.155 H14 IRM 55 
IRM H15 H15 H 0 1 N N N 66.787 81.731 92.178 12.064  -0.668 0.652  H15 IRM 56 
IRM H16 H16 H 0 1 N N N 66.623 84.569 94.217 15.190  1.117  0.646  H16 IRM 57 
IRM H17 H17 H 0 1 N N N 66.879 82.792 94.184 14.381  -0.432 0.984  H17 IRM 58 
IRM H18 H18 H 0 1 N N N 69.330 83.196 93.818 14.235  -0.887 -1.449 H18 IRM 59 
IRM H19 H19 H 0 1 N N N 69.031 84.959 93.986 15.044  0.662  -1.787 H19 IRM 60 
IRM H20 H20 H 0 1 N N N 67.860 83.882 96.323 17.129  -0.254 -0.508 H20 IRM 61 
IRM H21 H21 H 0 1 N N N 66.885 72.024 68.797 -13.964 -1.226 -0.576 H21 IRM 62 
IRM H22 H22 H 0 1 N N N 67.186 70.255 68.875 -13.161 0.230  -1.210 H22 IRM 63 
IRM H23 H23 H 0 1 N N N 65.389 70.759 67.456 -16.867 2.056  -2.177 H23 IRM 64 
IRM H24 H24 H 0 1 N N N 65.073 70.475 65.711 -17.445 0.766  -3.259 H24 IRM 65 
IRM H25 H25 H 0 1 N N N 66.184 69.387 66.611 -17.794 0.688  -1.515 H25 IRM 66 
IRM H26 H26 H 0 1 N N N 66.113 73.146 66.875 -14.535 1.702  -3.001 H26 IRM 67 
IRM H27 H27 H 0 1 N N N 67.394 73.381 65.638 -13.800 0.083  -2.926 H27 IRM 68 
IRM H28 H28 H 0 1 N N N 65.771 72.784 65.150 -15.113 0.412  -4.083 H28 IRM 69 
IRM H29 H29 H 0 1 N N N 68.302 69.163 72.171 -11.897 -2.590 0.688  H29 IRM 70 
IRM H30 H30 H 0 1 N N N 67.673 69.057 70.492 -10.976 -2.093 2.128  H30 IRM 71 
IRM H31 H31 H 0 1 N N N 69.444 69.016 70.793 -12.754 -2.170 2.191  H31 IRM 72 
IRM H32 H32 H 0 1 N N N 68.077 70.392 77.357 -7.121  -2.444 0.540  H32 IRM 73 
IRM H33 H33 H 0 1 N N N 67.522 69.772 75.765 -6.201  -1.947 1.981  H33 IRM 74 
IRM H34 H34 H 0 1 N N N 69.244 70.228 76.000 -7.978  -2.024 2.043  H34 IRM 75 
IRM H35 H35 H 0 1 N N N 66.778 72.735 82.130 -2.326  -2.264 0.382  H35 IRM 76 
IRM H36 H36 H 0 1 N N N 66.362 71.721 80.707 -1.406  -1.767 1.822  H36 IRM 77 
IRM H37 H37 H 0 1 N N N 68.047 72.300 80.936 -3.183  -1.844 1.884  H37 IRM 78 
IRM H38 H38 H 0 1 N N N 64.708 80.157 84.060 3.483   2.813  0.828  H38 IRM 79 
IRM H39 H39 H 0 1 N N N 65.621 79.401 82.711 4.340   2.393  -0.675 H39 IRM 80 
IRM H40 H40 H 0 1 N N N 63.917 78.924 83.020 2.563   2.316  -0.613 H40 IRM 81 
IRM H41 H41 H 0 1 N N N 66.272 83.442 87.947 8.278   2.993  0.669  H41 IRM 82 
IRM H42 H42 H 0 1 N N N 66.898 82.504 86.549 9.135   2.573  -0.834 H42 IRM 83 
IRM H43 H43 H 0 1 N N N 65.127 82.654 86.809 7.358   2.496  -0.771 H43 IRM 84 
IRM H44 H44 H 0 1 N N N 67.619 85.850 92.421 13.054  3.139  0.521  H44 IRM 85 
IRM H45 H45 H 0 1 N N N 68.290 84.995 90.991 13.911  2.719  -0.981 H45 IRM 86 
IRM H46 H46 H 0 1 N N N 66.541 85.398 91.057 12.134  2.642  -0.919 H46 IRM 87 
IRM H47 H47 H 0 1 N N N 69.686 70.981 69.216 -13.206 1.240  1.054  H47 IRM 88 
IRM H48 H48 H 0 1 N N N 68.963 72.556 69.690 -14.008 -0.217 1.688  H48 IRM 89 
IRM H49 H49 H 0 1 N N N 70.900 83.438 98.358 15.075  -2.765 -2.695 H49 IRM 90 
IRM H50 H50 H 0 1 N N N 69.448 84.494 98.412 15.459  -3.958 -1.432 H50 IRM 91 
IRM H51 H51 H 0 1 N N N 69.258 82.712 98.295 14.383  -2.589 -1.065 H51 IRM 92 
IRM H52 H52 H 0 1 N N N 71.998 83.409 96.660 18.549  -1.964 -0.842 H52 IRM 93 
IRM H53 H53 H 0 1 N N N 71.255 82.658 95.207 17.813  -3.538 -0.455 H53 IRM 94 
IRM H54 H54 H 0 1 N N N 71.469 84.440 95.288 18.088  -3.077 -2.152 H54 IRM 95 
IRM H55 H55 H 0 1 N N N 68.335 72.820 71.855 -10.907 1.217  0.557  H55 IRM 96 
IRM H56 H56 H 0 1 N N N 68.285 70.286 73.632 -9.533  -1.466 1.364  H56 IRM 97 
IRM H57 H57 H 0 1 N N N 67.900 73.233 74.149 -8.504  1.293  0.482  H57 IRM 98 
IRM H58 H58 H 0 1 N N N 67.850 69.957 65.006 -16.356 -1.457 -3.012 H58 IRM 99 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
IRM O32 C1  SING N N 1  
IRM C31 C1  SING N N 2  
IRM C1  C30 SING N N 3  
IRM C1  C2  SING N N 4  
IRM C2  C3  SING N N 5  
IRM C3  C4  SING N N 6  
IRM C4  C5  SING N N 7  
IRM C5  C33 SING N N 8  
IRM C5  C6  DOUB N E 9  
IRM C6  C7  SING N N 10 
IRM C7  C8  DOUB N E 11 
IRM C8  C9  SING N N 12 
IRM C9  C34 SING N N 13 
IRM C9  C10 DOUB N E 14 
IRM C10 C11 SING N N 15 
IRM C11 C12 DOUB N E 16 
IRM C12 C13 SING N N 17 
IRM C13 C14 DOUB N E 18 
IRM C13 C35 SING N N 19 
IRM C14 C15 SING N N 20 
IRM C15 C16 DOUB N E 21 
IRM C16 C17 SING N N 22 
IRM C36 C18 SING N N 23 
IRM C17 C18 DOUB N E 24 
IRM C18 C19 SING N N 25 
IRM C19 C20 DOUB N E 26 
IRM C20 C21 SING N N 27 
IRM C37 C22 SING N N 28 
IRM C21 C22 DOUB N E 29 
IRM C22 C23 SING N N 30 
IRM C23 C24 DOUB N E 31 
IRM C24 C25 SING N N 32 
IRM C25 C26 DOUB N E 33 
IRM C38 C26 SING N N 34 
IRM C26 C27 SING N N 35 
IRM C27 C28 SING N N 36 
IRM C28 C29 SING N N 37 
IRM C29 C39 DOUB N N 38 
IRM C41 C39 SING N N 39 
IRM C39 C40 SING N N 40 
IRM C10 H1  SING N N 41 
IRM C11 H2  SING N N 42 
IRM C12 H3  SING N N 43 
IRM C14 H4  SING N N 44 
IRM C15 H5  SING N N 45 
IRM C16 H6  SING N N 46 
IRM C17 H7  SING N N 47 
IRM C19 H8  SING N N 48 
IRM C2  H9  SING N N 49 
IRM C2  H10 SING N N 50 
IRM C20 H11 SING N N 51 
IRM C21 H12 SING N N 52 
IRM C23 H13 SING N N 53 
IRM C24 H14 SING N N 54 
IRM C25 H15 SING N N 55 
IRM C27 H16 SING N N 56 
IRM C27 H17 SING N N 57 
IRM C28 H18 SING N N 58 
IRM C28 H19 SING N N 59 
IRM C29 H20 SING N N 60 
IRM C3  H21 SING N N 61 
IRM C3  H22 SING N N 62 
IRM C30 H23 SING N N 63 
IRM C30 H24 SING N N 64 
IRM C30 H25 SING N N 65 
IRM C31 H26 SING N N 66 
IRM C31 H27 SING N N 67 
IRM C31 H28 SING N N 68 
IRM C33 H29 SING N N 69 
IRM C33 H30 SING N N 70 
IRM C33 H31 SING N N 71 
IRM C34 H32 SING N N 72 
IRM C34 H33 SING N N 73 
IRM C34 H34 SING N N 74 
IRM C35 H35 SING N N 75 
IRM C35 H36 SING N N 76 
IRM C35 H37 SING N N 77 
IRM C36 H38 SING N N 78 
IRM C36 H39 SING N N 79 
IRM C36 H40 SING N N 80 
IRM C37 H41 SING N N 81 
IRM C37 H42 SING N N 82 
IRM C37 H43 SING N N 83 
IRM C38 H44 SING N N 84 
IRM C38 H45 SING N N 85 
IRM C38 H46 SING N N 86 
IRM C4  H47 SING N N 87 
IRM C4  H48 SING N N 88 
IRM C40 H49 SING N N 89 
IRM C40 H50 SING N N 90 
IRM C40 H51 SING N N 91 
IRM C41 H52 SING N N 92 
IRM C41 H53 SING N N 93 
IRM C41 H54 SING N N 94 
IRM C6  H55 SING N N 95 
IRM C7  H56 SING N N 96 
IRM C8  H57 SING N N 97 
IRM O32 H58 SING N N 98 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
IRM InChI            InChI                1.06  "InChI=1S/C40H58O/c1-33(2)19-13-22-36(5)25-16-28-37(6)26-14-23-34(3)20-11-12-21-35(4)24-15-27-38(7)29-17-30-39(8)31-18-32-40(9,10)41/h11-12,14-17,19-21,23-30,41H,13,18,22,31-32H2,1-10H3/b12-11+,23-14+,24-15+,28-16+,29-17+,34-20+,35-21+,36-25+,37-26+,38-27+,39-30+" 
IRM InChIKey         InChI                1.06  CNYVJTJLUKKCGM-RGGGOQHISA-N                                                                                                                                                                                                                                              
IRM SMILES_CANONICAL CACTVS               3.385 "CC(C)=CCC/C(C)=C/C=C/C(C)=C/C=C/C(C)=C/C=C/C=C(C)/C=C/C=C(C)/C=C/C=C(\C)CCCC(C)(C)O"                                                                                                                                                                                    
IRM SMILES           CACTVS               3.385 "CC(C)=CCCC(C)=CC=CC(C)=CC=CC(C)=CC=CC=C(C)C=CC=C(C)C=CC=C(C)CCCC(C)(C)O"                                                                                                                                                                                                
IRM SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=CCC/C(=C/C=C/C(=C/C=C/C(=C/C=C/C=C(\C)/C=C/C=C(\C)/C=C/C=C(\C)/CCCC(C)(C)O)/C)/C)/C)C"                                                                                                                                                                              
IRM SMILES           "OpenEye OEToolkits" 2.0.7 "CC(=CCCC(=CC=CC(=CC=CC(=CC=CC=C(C)C=CC=C(C)C=CC=C(C)CCCC(C)(C)O)C)C)C)C"                                                                                                                                                                                                
# 
_pdbx_chem_comp_identifier.comp_id           IRM 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(6~{E},8~{E},10~{E},12~{E},14~{E},16~{E},18~{E},20~{E},22~{E},24~{E},26~{E})-2,6,10,14,19,23,27,31-octamethyldotriaconta-6,8,10,12,14,16,18,20,22,24,26,30-dodecaen-2-ol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
IRM "Create component"  2022-04-07 PDBE 
IRM "Modify descriptor" 2022-08-22 RCSB 
IRM "Initial release"   2022-10-05 RCSB 
IRM "Modify synonyms"   2022-10-05 PDBE 
# 
loop_
_pdbx_chem_comp_synonyms.ordinal 
_pdbx_chem_comp_synonyms.comp_id 
_pdbx_chem_comp_synonyms.name 
_pdbx_chem_comp_synonyms.provenance 
_pdbx_chem_comp_synonyms.type 
1 IRM Rhodopin                                                                                                                                                                   ? ? 
2 IRM "(6~{E},8~{E},10~{E},12~{E},14~{E},16~{E},18~{E},20~{E},22~{E},24~{E},26~{E})-2,6,10,14,19,23,27,31-octamethyldotriaconta-6,8,10,12,14,16,18,20,22,24,26,30-dodecaen-2-ol" ? ? 
# 
