data_2KM
# 
_chem_comp.id                                    2KM 
_chem_comp.name                                  "L-chiro-inositol 2,3,5-trisphosphate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C6 H15 O15 P3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "[(1R,2R,3R,4R,5S,6R)-2,3,5-tris(oxidanyl)-4,6-diphosphonooxy-cyclohexyl] dihydrogen phosphate" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-05-23 
_chem_comp.pdbx_modified_date                    2024-02-23 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        420.096 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     2KM 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8PPC 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
2KM C1  C1  C 0 1 N N R N N N 12.309 28.083 84.045 -0.040 1.980  0.653  C1  2KM 1  
2KM C2  C2  C 0 1 N N R N N N 12.167 28.066 85.546 0.930  1.027  -0.047 C2  2KM 2  
2KM C3  C3  C 0 1 N N R N N N 11.543 29.349 86.038 0.373  -0.397 0.006  C3  2KM 3  
2KM C4  C4  C 0 1 N N S N N N 10.146 29.501 85.487 -0.984 -0.440 -0.700 C4  2KM 4  
2KM C5  C5  C 0 1 N N R N N N 10.212 29.458 83.966 -1.954 0.514  0.000  C5  2KM 5  
2KM C6  C6  C 0 1 N N R N N N 10.925 28.211 83.439 -1.396 1.937  -0.053 C6  2KM 6  
2KM O1  O1  O 0 1 N N N N N N 13.147 29.183 83.678 -0.199 1.582  2.016  O1  2KM 7  
2KM O23 O2  O 0 1 N N N N N N 13.054 30.950 88.412 0.852  -3.599 0.530  O23 2KM 8  
2KM O2  O3  O 0 1 N N N N N N 13.473 27.981 86.122 2.197  1.067  0.612  O2  2KM 9  
2KM O22 O4  O 0 1 N N N N N N 15.313 26.812 87.435 4.802  1.308  0.874  O22 2KM 10 
2KM O6  O5  O 0 1 N N N N N N 10.158 27.036 83.697 -1.237 2.336  -1.416 O6  2KM 11 
2KM O32 O6  O 0 1 N N N N N N 14.028 25.726 85.505 3.757  0.666  -1.332 O32 2KM 12 
2KM P2  P1  P 0 1 N N N N N N 13.982 26.591 86.746 3.558  1.505  -0.129 P2  2KM 13 
2KM O15 O7  O 0 1 N N N N N N 9.485  29.255 81.141 -4.780 0.875  1.284  O15 2KM 14 
2KM O35 O8  O 0 1 N N N N N N 7.021  29.310 81.616 -5.826 0.232  -0.921 O35 2KM 15 
2KM O33 O9  O 0 1 N N N N N N 10.674 31.523 87.763 2.688  -2.049 1.303  O33 2KM 16 
2KM P3  P2  P 0 1 N N N N N N 11.594 30.554 88.473 1.977  -2.532 0.097  P3  2KM 17 
2KM O5  O10 O 0 1 N N N N N N 8.861  29.441 83.471 -3.221 0.473  -0.659 O5  2KM 18 
2KM O12 O11 O 0 1 N N N N N N 12.881 26.169 87.702 3.458  3.052  -0.564 O12 2KM 19 
2KM O13 O12 O 0 1 N N N N N N 11.137 30.138 89.853 3.028  -3.234 -0.900 O13 2KM 20 
2KM O25 O13 O 0 1 N N N N N N 8.433  31.360 82.033 -4.482 -1.511 0.517  O25 2KM 21 
2KM O3  O14 O 0 1 N N N N N N 11.449 29.291 87.471 1.279  -1.288 -0.649 O3  2KM 22 
2KM P5  P3  P 0 1 N N N N N N 8.379  29.849 81.988 -4.582 0.036  0.082  P5  2KM 23 
2KM O4  O15 O 0 1 N N N N N N 9.634  30.743 85.957 -1.505 -1.770 -0.651 O4  2KM 24 
2KM H1  H1  H 0 1 N N N N N N 12.759 27.135 83.714 0.358  2.995  0.616  H1  2KM 25 
2KM H2  H2  H 0 1 N N N N N N 11.547 27.210 85.851 1.052  1.331  -1.087 H2  2KM 26 
2KM H3  H3  H 0 1 N N N N N N 12.159 30.204 85.724 0.251  -0.701 1.045  H3  2KM 27 
2KM H4  H4  H 0 1 N N N N N N 9.523  28.668 85.844 -0.862 -0.136 -1.740 H4  2KM 28 
2KM H5  H5  H 0 1 N N N N N N 10.739 30.353 83.603 -2.075 0.209  1.040  H5  2KM 29 
2KM H6  H6  H 0 1 N N N N N N 11.043 28.329 82.352 -2.087 2.617  0.446  H6  2KM 30 
2KM H7  H7  H 0 1 N N N N N N 14.004 29.074 84.072 -0.802 2.143  2.522  H7  2KM 31 
2KM H8  H8  H 0 1 N N N N N N 13.143 31.761 87.925 0.346  -3.959 -0.212 H8  2KM 32 
2KM H9  H9  H 0 1 N N N N N N 15.996 26.354 86.960 5.657  1.553  0.493  H9  2KM 33 
2KM H10 H10 H 0 1 N N N N N N 10.619 26.276 83.362 -0.886 3.231  -1.525 H10 2KM 34 
2KM H11 H11 H 0 1 N N N N N N 7.111  28.686 80.906 -6.680 -0.013 -0.540 H11 2KM 35 
2KM H12 H12 H 0 1 N N N N N N 12.414 25.425 87.339 3.328  3.661  0.176  H12 2KM 36 
2KM H13 H13 H 0 1 N N N N N N 10.315 30.569 90.058 3.488  -3.993 -0.516 H13 2KM 37 
2KM H14 H14 H 0 1 N N N N N N 9.165  31.667 81.511 -4.351 -2.120 -0.223 H14 2KM 38 
2KM H15 H15 H 0 1 N N N N N N 10.121 31.016 86.726 -2.365 -1.872 -1.081 H15 2KM 39 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
2KM O15 P5  DOUB N N 1  
2KM O35 P5  SING N N 2  
2KM P5  O25 SING N N 3  
2KM P5  O5  SING N N 4  
2KM C6  O6  SING N N 5  
2KM C6  C5  SING N N 6  
2KM C6  C1  SING N N 7  
2KM O5  C5  SING N N 8  
2KM O1  C1  SING N N 9  
2KM C5  C4  SING N N 10 
2KM C1  C2  SING N N 11 
2KM C4  O4  SING N N 12 
2KM C4  C3  SING N N 13 
2KM O32 P2  DOUB N N 14 
2KM C2  C3  SING N N 15 
2KM C2  O2  SING N N 16 
2KM C3  O3  SING N N 17 
2KM O2  P2  SING N N 18 
2KM P2  O22 SING N N 19 
2KM P2  O12 SING N N 20 
2KM O3  P3  SING N N 21 
2KM O33 P3  DOUB N N 22 
2KM O23 P3  SING N N 23 
2KM P3  O13 SING N N 24 
2KM C1  H1  SING N N 25 
2KM C2  H2  SING N N 26 
2KM C3  H3  SING N N 27 
2KM C4  H4  SING N N 28 
2KM C5  H5  SING N N 29 
2KM C6  H6  SING N N 30 
2KM O1  H7  SING N N 31 
2KM O23 H8  SING N N 32 
2KM O22 H9  SING N N 33 
2KM O6  H10 SING N N 34 
2KM O35 H11 SING N N 35 
2KM O12 H12 SING N N 36 
2KM O13 H13 SING N N 37 
2KM O25 H14 SING N N 38 
2KM O4  H15 SING N N 39 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
2KM InChI            InChI                1.06  "InChI=1S/C6H15O15P3/c7-1-2(8)5(20-23(13,14)15)6(21-24(16,17)18)3(9)4(1)19-22(10,11)12/h1-9H,(H2,10,11,12)(H2,13,14,15)(H2,16,17,18)/t1-,2-,3+,4-,5-,6-/m1/s1" 
2KM InChIKey         InChI                1.06  MMWCIQZXVOZEGG-UOTPTPDRSA-N                                                                                                                                    
2KM SMILES_CANONICAL CACTVS               3.385 "O[C@@H]1[C@@H](O)[C@@H](O[P](O)(O)=O)[C@H](O[P](O)(O)=O)[C@@H](O)[C@@H]1O[P](O)(O)=O"                                                                         
2KM SMILES           CACTVS               3.385 "O[CH]1[CH](O)[CH](O[P](O)(O)=O)[CH](O[P](O)(O)=O)[CH](O)[CH]1O[P](O)(O)=O"                                                                                    
2KM SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[C@H]1([C@H]([C@H]([C@@H]([C@H]([C@@H]1OP(=O)(O)O)O)OP(=O)(O)O)OP(=O)(O)O)O)O"                                                                                
2KM SMILES           "OpenEye OEToolkits" 2.0.7 "C1(C(C(C(C(C1OP(=O)(O)O)O)OP(=O)(O)O)OP(=O)(O)O)O)O"                                                                                                          
# 
_pdbx_chem_comp_identifier.comp_id           2KM 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "[(1~{R},2~{R},3~{R},4~{R},5~{S},6~{R})-2,3,5-tris(oxidanyl)-4,6-diphosphonooxy-cyclohexyl] dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
2KM "Create component" 2023-07-12 PDBE 
2KM "Initial release"  2024-02-28 RCSB 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      2KM 
_pdbx_chem_comp_synonyms.name         "[(1R,2R,3R,4R,5S,6R)-2,3,5-tris(oxidanyl)-4,6-diphosphonooxy-cyclohexyl] dihydrogen phosphate" 
_pdbx_chem_comp_synonyms.provenance   PDB 
_pdbx_chem_comp_synonyms.type         ? 
# 
