data_2EL
#

_chem_comp.id                                   2EL
_chem_comp.name                                 
;(3R,4S)-1-[(4-amino-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]-4-({[2-(2-hydroxyethoxy)ethyl]sulfanyl}methyl)pyrrolidin-3-
ol
;

_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C16 H25 N5 O3 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        DIETGLYCOL-THIO-DADME-IMMUCILLIN-A
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2012-05-09
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       367.466
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    2EL
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       4F2P
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
2EL  OAY  OAY  O  0  1  N  N  N  -4.470  -7.900  17.587   -9.321  -0.986  -1.702  OAY  2EL   1  
2EL  CAX  CAX  C  0  1  N  N  N  -3.088  -7.614  17.553   -9.447  -0.874  -0.283  CAX  2EL   2  
2EL  CAW  CAW  C  0  1  N  N  N  -3.017  -6.195  17.037   -8.128  -1.276   0.380  CAW  2EL   3  
2EL  OAV  OAV  O  0  1  N  N  N  -2.748  -5.344  18.182   -7.108  -0.344   0.016  OAV  2EL   4  
2EL  CAU  CAU  C  0  1  N  N  N  -3.023  -3.981  17.887   -5.829  -0.630   0.585  CAU  2EL   5  
2EL  CAI  CAI  C  0  1  N  N  N  -4.471  -3.842  18.223   -4.821   0.427   0.130  CAI  2EL   6  
2EL  SAH  SAH  S  0  1  N  N  N  -5.055  -2.149  17.777   -3.197   0.064   0.853  SAH  2EL   7  
2EL  CAG  CAG  C  0  1  N  N  N  -4.891  -1.295  19.363   -2.155   1.403   0.209  CAG  2EL   8  
2EL  CAF  CAF  C  0  1  N  N  S  -6.085  -1.698  20.309   -0.729   1.237   0.737  CAF  2EL   9  
2EL  CAE  CAE  C  0  1  N  N  N  -5.896  -1.027  21.645   -0.086  -0.040   0.153  CAE  2EL  10  
2EL  CAB  CAB  C  0  1  N  N  R  -7.489  -1.237  19.855    0.163   2.395   0.243  CAB  2EL  11  
2EL  OAA  OAA  O  0  1  N  N  N  -8.577  -1.968  20.450    0.736   3.088   1.354  OAA  2EL  12  
2EL  CAC  CAC  C  0  1  N  N  N  -7.541   0.246  20.348    1.269   1.720  -0.597  CAC  2EL  13  
2EL  NAD  NAD  N  0  1  N  N  N  -6.945   0.052  21.710    1.334   0.328  -0.082  NAD  2EL  14  
2EL  CAJ  CAJ  C  0  1  N  N  N  -6.541   1.260  22.488    1.954  -0.569  -1.065  CAJ  2EL  15  
2EL  CAK  CAK  C  0  1  Y  N  N  -5.248   2.002  22.085    3.442  -0.327  -1.097  CAK  2EL  16  
2EL  CAN  CAN  C  0  1  Y  N  N  -4.100   2.023  22.796    4.114   0.406  -2.004  CAN  2EL  17  
2EL  NAO  NAO  N  0  1  Y  N  N  -3.223   2.818  22.156    5.446   0.399  -1.710  NAO  2EL  18  
2EL  C5   C5   C  0  1  Y  N  N  -3.852   3.341  21.059    5.671  -0.356  -0.583  C5   2EL  19  
2EL  C6   C6   C  0  1  Y  N  N  -5.116   2.844  21.033    4.424  -0.838  -0.147  C6   2EL  20  
2EL  N1   N1   N  0  1  Y  N  N  -6.037   3.177  20.061    4.369  -1.607   0.944  N1   2EL  21  
2EL  C2   C2   C  0  1  Y  N  N  -5.557   4.031  19.066    5.467  -1.909   1.602  C2   2EL  22  
2EL  N3   N3   N  0  1  Y  N  N  -4.276   4.532  19.089    6.658  -1.477   1.227  N3   2EL  23  
2EL  C4   C4   C  0  1  Y  N  N  -3.440   4.219  20.082    6.807  -0.703   0.156  C4   2EL  24  
2EL  NAR  NAR  N  0  1  N  N  N  -2.203   4.721  20.091    8.062  -0.258  -0.226  NAR  2EL  25  
2EL  H1   H1   H  0  1  N  N  N  -4.603  -8.785  17.904  -10.121  -0.746  -2.189  H1   2EL  26  
2EL  H2   H2   H  0  1  N  N  N  -2.563  -8.303  16.875   -9.686   0.157  -0.020  H2   2EL  27  
2EL  H3   H3   H  0  1  N  N  N  -2.650  -7.686  18.559  -10.244  -1.532   0.064  H3   2EL  28  
2EL  H4   H4   H  0  1  N  N  N  -2.208  -6.101  16.297   -8.251  -1.276   1.463  H4   2EL  29  
2EL  H5   H5   H  0  1  N  N  N  -3.973  -5.913  16.572   -7.844  -2.274   0.046  H5   2EL  30  
2EL  H6   H6   H  0  1  N  N  N  -2.409  -3.312  18.507   -5.904  -0.616   1.672  H6   2EL  31  
2EL  H7   H7   H  0  1  N  N  N  -2.843  -3.764  16.824   -5.497  -1.614   0.256  H7   2EL  32  
2EL  H8   H8   H  0  1  N  N  N  -4.613  -4.005  19.301   -4.746   0.414  -0.957  H8   2EL  33  
2EL  H9   H9   H  0  1  N  N  N  -5.050  -4.589  17.660   -5.153   1.412   0.459  H9   2EL  34  
2EL  H10  H10  H  0  1  N  N  N  -3.939  -1.579  19.835   -2.147   1.365  -0.880  H10  2EL  35  
2EL  H11  H11  H  0  1  N  N  N  -4.907  -0.208  19.196   -2.554   2.363   0.537  H11  2EL  36  
2EL  H12  H12  H  0  1  N  N  N  -6.085  -2.790  20.437   -0.730   1.196   1.826  H12  2EL  37  
2EL  H13  H13  H  0  1  N  N  N  -6.039  -1.750  22.461   -0.153  -0.860   0.869  H13  2EL  38  
2EL  H14  H14  H  0  1  N  N  N  -4.890  -0.589  21.715   -0.568  -0.314  -0.785  H14  2EL  39  
2EL  H15  H15  H  0  1  N  N  N  -7.549  -1.260  18.757   -0.416   3.082  -0.375  H15  2EL  40  
2EL  H16  H16  H  0  1  N  N  N  -9.402  -1.629  20.124    1.307   3.827   1.104  H16  2EL  41  
2EL  H17  H17  H  0  1  N  N  N  -6.931   0.912  19.720    0.999   1.722  -1.653  H17  2EL  42  
2EL  H18  H18  H  0  1  N  N  N  -8.571   0.630  20.398    2.222   2.226  -0.446  H18  2EL  43  
2EL  H20  H20  H  0  1  N  N  N  -7.366   1.984  22.414    1.761  -1.604  -0.786  H20  2EL  44  
2EL  H21  H21  H  0  1  N  N  N  -6.421   0.946  23.535    1.534  -0.374  -2.052  H21  2EL  45  
2EL  H22  H22  H  0  1  N  N  N  -3.917   1.493  23.719    3.666   0.923  -2.839  H22  2EL  46  
2EL  H23  H23  H  0  1  N  N  N  -2.279   2.995  22.433    6.132   0.857  -2.221  H23  2EL  47  
2EL  H24  H24  H  0  1  N  N  N  -6.212   4.307  18.253    5.393  -2.535   2.479  H24  2EL  48  
2EL  H25  H25  H  0  1  N  N  N  -2.074   5.304  19.289    8.844  -0.509   0.291  H25  2EL  49  
2EL  H26  H26  H  0  1  N  N  N  -2.069   5.262  20.921    8.160   0.306  -1.009  H26  2EL  50  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
2EL  CAW  CAX  SING  N  N   1  
2EL  CAW  OAV  SING  N  N   2  
2EL  CAX  OAY  SING  N  N   3  
2EL  SAH  CAI  SING  N  N   4  
2EL  SAH  CAG  SING  N  N   5  
2EL  CAU  OAV  SING  N  N   6  
2EL  CAU  CAI  SING  N  N   7  
2EL  C2   N3   DOUB  Y  N   8  
2EL  C2   N1   SING  Y  N   9  
2EL  N3   C4   SING  Y  N  10  
2EL  CAG  CAF  SING  N  N  11  
2EL  CAB  CAF  SING  N  N  12  
2EL  CAB  CAC  SING  N  N  13  
2EL  CAB  OAA  SING  N  N  14  
2EL  N1   C6   DOUB  Y  N  15  
2EL  C4   NAR  SING  N  N  16  
2EL  C4   C5   DOUB  Y  N  17  
2EL  CAF  CAE  SING  N  N  18  
2EL  CAC  NAD  SING  N  N  19  
2EL  C6   C5   SING  Y  N  20  
2EL  C6   CAK  SING  Y  N  21  
2EL  C5   NAO  SING  Y  N  22  
2EL  CAE  NAD  SING  N  N  23  
2EL  NAD  CAJ  SING  N  N  24  
2EL  CAK  CAJ  SING  N  N  25  
2EL  CAK  CAN  DOUB  Y  N  26  
2EL  NAO  CAN  SING  Y  N  27  
2EL  OAY  H1   SING  N  N  28  
2EL  CAX  H2   SING  N  N  29  
2EL  CAX  H3   SING  N  N  30  
2EL  CAW  H4   SING  N  N  31  
2EL  CAW  H5   SING  N  N  32  
2EL  CAU  H6   SING  N  N  33  
2EL  CAU  H7   SING  N  N  34  
2EL  CAI  H8   SING  N  N  35  
2EL  CAI  H9   SING  N  N  36  
2EL  CAG  H10  SING  N  N  37  
2EL  CAG  H11  SING  N  N  38  
2EL  CAF  H12  SING  N  N  39  
2EL  CAE  H13  SING  N  N  40  
2EL  CAE  H14  SING  N  N  41  
2EL  CAB  H15  SING  N  N  42  
2EL  OAA  H16  SING  N  N  43  
2EL  CAC  H17  SING  N  N  44  
2EL  CAC  H18  SING  N  N  45  
2EL  CAJ  H20  SING  N  N  46  
2EL  CAJ  H21  SING  N  N  47  
2EL  CAN  H22  SING  N  N  48  
2EL  NAO  H23  SING  N  N  49  
2EL  C2   H24  SING  N  N  50  
2EL  NAR  H25  SING  N  N  51  
2EL  NAR  H26  SING  N  N  52  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
2EL  SMILES            ACDLabs               12.01  "OCCOCCSCC3CN(Cc2cnc1c2ncnc1N)CC3O"  
2EL  InChI             InChI                 1.03   "InChI=1S/C16H25N5O3S/c17-16-15-14(19-10-20-16)11(5-18-15)6-21-7-12(13(23)8-21)9-25-4-3-24-2-1-22/h5,10,12-13,18,22-23H,1-4,6-9H2,(H2,17,19,20)/t12-,13+/m1/s1"  
2EL  InChIKey          InChI                 1.03   OXNZLFLPEGTARO-OLZOCXBDSA-N  
2EL  SMILES_CANONICAL  CACTVS                3.370  "Nc1ncnc2c(CN3C[C@H](O)[C@@H](CSCCOCCO)C3)c[nH]c12"  
2EL  SMILES            CACTVS                3.370  "Nc1ncnc2c(CN3C[CH](O)[CH](CSCCOCCO)C3)c[nH]c12"  
2EL  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "c1c(c2c([nH]1)c(ncn2)N)CN3C[C@@H]([C@H](C3)O)CSCCOCCO"  
2EL  SMILES            "OpenEye OEToolkits"  1.7.6  "c1c(c2c([nH]1)c(ncn2)N)CN3CC(C(C3)O)CSCCOCCO"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
2EL  "SYSTEMATIC NAME"  ACDLabs               12.01  "(3R,4S)-1-[(4-amino-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]-4-({[2-(2-hydroxyethoxy)ethyl]sulfanyl}methyl)pyrrolidin-3-ol"  
2EL  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.6  "(3R,4S)-1-[(4-azanyl-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]-4-[2-(2-hydroxyethyloxy)ethylsulfanylmethyl]pyrrolidin-3-ol"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
2EL  "Create component"  2013-04-25  RCSB  
2EL  "Modify synonyms"   2013-04-25  RCSB  
2EL  "Initial release"   2013-05-01  RCSB  
2EL  "Modify synonyms"   2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     2EL
_pdbx_chem_comp_synonyms.name        DIETGLYCOL-THIO-DADME-IMMUCILLIN-A
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
