data_RBF
#

_chem_comp.id                                   RBF
_chem_comp.name                                 RIBOFLAVIN
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C17 H20 N4 O6"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "RIBOFLAVINE; VITAMIN B2"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    1999-07-08
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       376.364
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    RBF
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1BU5
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
RBF  N1      N1      N  0  1  N  N  N  63.558  13.186  32.470   0.665  -2.485   0.513  N1      RBF   1  
RBF  C2      C2      C  0  1  N  N  N  63.169  11.920  32.047   1.312  -3.611   0.222  C2      RBF   2  
RBF  O2      O2      O  0  1  N  N  N  62.558  11.667  31.043   0.741  -4.668   0.428  O2      RBF   3  
RBF  N3      N3      N  0  1  N  N  N  63.547  10.872  32.846   2.552  -3.655  -0.285  N3      RBF   4  
RBF  C4      C4      C  0  1  N  N  N  64.253  11.071  34.006   3.248  -2.523  -0.540  C4      RBF   5  
RBF  O4      O4      O  0  1  N  N  N  64.578  10.181  34.775   4.373  -2.561  -1.000  O4      RBF   6  
RBF  C4A     C4A     C  0  1  N  N  N  64.656  12.448  34.429   2.581  -1.238  -0.236  C4A     RBF   7  
RBF  N5      N5      N  0  1  N  N  N  65.305  12.580  35.525   3.162  -0.084  -0.444  N5      RBF   8  
RBF  C5A     C5A     C  0  1  Y  N  N  65.711  13.877  35.822   2.530   1.061  -0.157  C5A     RBF   9  
RBF  C6      C6      C  0  1  Y  N  N  66.487  14.059  36.962   3.174   2.293  -0.388  C6      RBF  10  
RBF  C7      C7      C  0  1  Y  N  N  66.917  15.314  37.283   2.533   3.460  -0.098  C7      RBF  11  
RBF  C7M     C7M     C  0  1  N  N  N  67.758  15.674  38.495   3.228   4.773  -0.348  C7M     RBF  12  
RBF  C8      C8      C  0  1  Y  N  N  66.550  16.417  36.470   1.245   3.452   0.426  C8      RBF  13  
RBF  C8M     C8M     C  0  1  N  N  N  67.052  17.822  36.915   0.558   4.757   0.738  C8M     RBF  14  
RBF  C9      C9      C  0  1  Y  N  N  65.798  16.295  35.350   0.591   2.263   0.663  C9      RBF  15  
RBF  C9A     C9A     C  0  1  Y  N  N  65.386  14.989  35.045   1.221   1.056   0.376  C9A     RBF  16  
RBF  N10     N10     N  0  1  N  N  N  64.626  14.718  33.932   0.571  -0.137   0.611  N10     RBF  17  
RBF  C10     C10     C  0  1  N  N  N  64.263  13.480  33.580   1.218  -1.299   0.318  C10     RBF  18  
RBF  "C1'"   "C1'"   C  0  1  N  N  N  64.153  15.809  32.997  -0.786  -0.154   1.164  "C1'"   RBF  19  
RBF  "C2'"   "C2'"   C  0  1  N  N  S  62.983  16.483  33.740  -1.803  -0.127   0.021  "C2'"   RBF  20  
RBF  "O2'"   "O2'"   O  0  1  N  N  N  61.799  15.638  33.723  -1.618   1.061  -0.752  "O2'"   RBF  21  
RBF  "C3'"   "C3'"   C  0  1  N  N  S  62.539  17.723  33.018  -3.220  -0.145   0.598  "C3'"   RBF  22  
RBF  "O3'"   "O3'"   O  0  1  N  N  N  61.857  17.222  31.904  -3.404  -1.332   1.371  "O3'"   RBF  23  
RBF  "C4'"   "C4'"   C  0  1  N  N  R  63.558  18.723  32.686  -4.236  -0.117  -0.545  "C4'"   RBF  24  
RBF  "O4'"   "O4'"   O  0  1  N  N  N  64.592  19.005  33.600  -4.052   1.070  -1.319  "O4'"   RBF  25  
RBF  "C5'"   "C5'"   C  0  1  N  N  N  62.790  20.110  32.744  -5.653  -0.135   0.032  "C5'"   RBF  26  
RBF  "O5'"   "O5'"   O  0  1  N  N  N  62.460  20.225  31.363  -6.601  -0.227  -1.034  "O5'"   RBF  27  
RBF  HN3     HN3     H  0  1  N  N  N  63.302   9.940  32.577   2.959  -4.516  -0.472  HN3     RBF  28  
RBF  HC6     HC6     H  0  1  N  N  N  66.746  13.217  37.586   4.174   2.312  -0.795  HC6     RBF  29  
RBF  HC71    HC71    H  0  0  N  N  N  68.824  15.624  38.230   3.007   5.114  -1.360  HC71    RBF  30  
RBF  HC72    HC72    H  0  0  N  N  N  67.510  16.694  38.824   2.874   5.514   0.369  HC72    RBF  31  
RBF  HC73    HC73    H  0  0  N  N  N  67.549  14.965  39.310   4.304   4.643  -0.235  HC73    RBF  32  
RBF  HC81    HC81    H  0  0  N  N  N  68.031  18.024  36.456   0.005   5.095  -0.138  HC81    RBF  33  
RBF  HC82    HC82    H  0  0  N  N  N  66.331  18.588  36.593  -0.131   4.615   1.571  HC82    RBF  34  
RBF  HC83    HC83    H  0  0  N  N  N  67.148  17.847  38.010   1.304   5.504   1.008  HC83    RBF  35  
RBF  HC9     HC9     H  0  1  N  N  N  65.534  17.143  34.735  -0.409   2.268   1.071  HC9     RBF  36  
RBF  HC11    HC11    H  0  0  N  N  N  64.959  16.533  32.806  -0.927  -1.060   1.754  HC11    RBF  37  
RBF  HC12    HC12    H  0  0  N  N  N  63.811  15.381  32.043  -0.931   0.719   1.799  HC12    RBF  38  
RBF  "HC2'"  "HC2'"  H  0  0  N  N  N  63.283  16.725  34.770  -1.658  -1.000  -0.615  "HC2'"  RBF  39  
RBF  "HO2'"  "HO2'"  H  0  0  N  N  N  61.092  16.073  34.186  -1.732   1.879  -0.250  "HO2'"  RBF  40  
RBF  "HC3'"  "HC3'"  H  0  0  N  N  N  61.803  18.218  33.669  -3.364   0.729   1.234  "HC3'"  RBF  41  
RBF  "HO3'"  "HO3'"  H  0  0  N  N  N  61.534  17.945  31.379  -3.290  -2.151   0.868  "HO3'"  RBF  42  
RBF  "HC4'"  "HC4'"  H  0  0  N  N  N  63.945  18.566  31.668  -4.092  -0.991  -1.181  "HC4'"  RBF  43  
RBF  "HO4'"  "HO4'"  H  0  0  N  N  N  65.164  19.670  33.236  -4.166   1.888  -0.816  "HO4'"  RBF  44  
RBF  HC51    HC51    H  0  0  N  N  N  61.895  20.062  33.382  -5.765  -0.995   0.693  HC51    RBF  45  
RBF  HC52    HC52    H  0  0  N  N  N  63.440  20.930  33.085  -5.828   0.781   0.595  HC52    RBF  46  
RBF  "HO5'"  "HO5'"  H  0  0  N  N  N  61.979  21.031  31.218  -7.522  -0.244  -0.741  "HO5'"  RBF  47  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
RBF  N1     C2      SING  N  N   1  
RBF  N1     C10     DOUB  N  N   2  
RBF  C2     O2      DOUB  N  N   3  
RBF  C2     N3      SING  N  N   4  
RBF  N3     C4      SING  N  N   5  
RBF  N3     HN3     SING  N  N   6  
RBF  C4     O4      DOUB  N  N   7  
RBF  C4     C4A     SING  N  N   8  
RBF  C4A    N5      DOUB  N  N   9  
RBF  C4A    C10     SING  N  N  10  
RBF  N5     C5A     SING  N  N  11  
RBF  C5A    C6      DOUB  Y  N  12  
RBF  C5A    C9A     SING  Y  N  13  
RBF  C6     C7      SING  Y  N  14  
RBF  C6     HC6     SING  N  N  15  
RBF  C7     C7M     SING  N  N  16  
RBF  C7     C8      DOUB  Y  N  17  
RBF  C7M    HC71    SING  N  N  18  
RBF  C7M    HC72    SING  N  N  19  
RBF  C7M    HC73    SING  N  N  20  
RBF  C8     C8M     SING  N  N  21  
RBF  C8     C9      SING  Y  N  22  
RBF  C8M    HC81    SING  N  N  23  
RBF  C8M    HC82    SING  N  N  24  
RBF  C8M    HC83    SING  N  N  25  
RBF  C9     C9A     DOUB  Y  N  26  
RBF  C9     HC9     SING  N  N  27  
RBF  C9A    N10     SING  N  N  28  
RBF  N10    C10     SING  N  N  29  
RBF  N10    "C1'"   SING  N  N  30  
RBF  "C1'"  "C2'"   SING  N  N  31  
RBF  "C1'"  HC11    SING  N  N  32  
RBF  "C1'"  HC12    SING  N  N  33  
RBF  "C2'"  "O2'"   SING  N  N  34  
RBF  "C2'"  "C3'"   SING  N  N  35  
RBF  "C2'"  "HC2'"  SING  N  N  36  
RBF  "O2'"  "HO2'"  SING  N  N  37  
RBF  "C3'"  "O3'"   SING  N  N  38  
RBF  "C3'"  "C4'"   SING  N  N  39  
RBF  "C3'"  "HC3'"  SING  N  N  40  
RBF  "O3'"  "HO3'"  SING  N  N  41  
RBF  "C4'"  "O4'"   SING  N  N  42  
RBF  "C4'"  "C5'"   SING  N  N  43  
RBF  "C4'"  "HC4'"  SING  N  N  44  
RBF  "O4'"  "HO4'"  SING  N  N  45  
RBF  "C5'"  "O5'"   SING  N  N  46  
RBF  "C5'"  HC51    SING  N  N  47  
RBF  "C5'"  HC52    SING  N  N  48  
RBF  "O5'"  "HO5'"  SING  N  N  49  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
RBF  SMILES            ACDLabs               12.01  "N=2C(=O)NC(=O)C3=Nc1cc(C)c(C)cc1N(C=23)CC(O)C(O)C(O)CO"  
RBF  InChI             InChI                 1.03   "InChI=1S/C17H20N4O6/c1-7-3-9-10(4-8(7)2)21(5-11(23)14(25)12(24)6-22)15-13(18-9)16(26)20-17(27)19-15/h3-4,11-12,14,22-25H,5-6H2,1-2H3,(H,20,26,27)/t11-,12+,14-/m0/s1"  
RBF  InChIKey          InChI                 1.03   AUNGANRZJHBGPY-SCRDCRAPSA-N  
RBF  SMILES_CANONICAL  CACTVS                3.385  "Cc1cc2N=C3C(=O)NC(=O)N=C3N(C[C@H](O)[C@H](O)[C@H](O)CO)c2cc1C"  
RBF  SMILES            CACTVS                3.385  "Cc1cc2N=C3C(=O)NC(=O)N=C3N(C[CH](O)[CH](O)[CH](O)CO)c2cc1C"  
RBF  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "Cc1cc2c(cc1C)N(C3=NC(=O)NC(=O)C3=N2)C[C@@H]([C@@H]([C@@H](CO)O)O)O"  
RBF  SMILES            "OpenEye OEToolkits"  1.7.6  "Cc1cc2c(cc1C)N(C3=NC(=O)NC(=O)C3=N2)CC(C(C(CO)O)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
RBF  "SYSTEMATIC NAME"  ACDLabs               12.01  "1-deoxy-1-(7,8-dimethyl-2,4-dioxo-3,4-dihydrobenzo[g]pteridin-10(2H)-yl)-D-ribitol"  
RBF  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.6  "7,8-dimethyl-10-[(2S,3S,4R)-2,3,4,5-tetrakis(oxidanyl)pentyl]benzo[g]pteridine-2,4-dione"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
RBF  "Create component"      1999-07-08  RCSB  
RBF  "Modify aromatic_flag"  2011-06-04  RCSB  
RBF  "Modify descriptor"     2011-06-04  RCSB  
RBF  "Modify aromatic_flag"  2016-02-17  RCSB  
RBF  "Modify synonyms"       2020-06-05  PDBE  
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  RBF  RIBOFLAVINE    ?  ?  
2  RBF  "VITAMIN B2"   ?  ?  
##
