data_1OF
#

_chem_comp.id                                   1OF
_chem_comp.name                                 "[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-3,4-bis(oxidanyl)-5-(8-oxidanylidene-7~{H}-2,7-naphthyridin-2-yl)oxolan-2-yl]methyl hydrogen phosphate"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C23 H28 N7 O14 P2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   1
_chem_comp.pdbx_initial_date                    2021-06-23
_chem_comp.pdbx_modified_date                   2022-03-18
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       688.454
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    1OF
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7NAH
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
1OF  C8    C1   C  0  1  N  N  R   7.784  28.307  -12.229    6.812  -2.160   0.612  C8    1OF   1  
1OF  C5    C2   C  0  1  N  N  N   9.510  27.872   -9.414    3.568  -1.604   1.917  C5    1OF   2  
1OF  C6    C3   C  0  1  N  N  R   9.633  28.580  -10.739    4.378  -2.070   0.706  C6    1OF   3  
1OF  N6    N1   N  0  1  N  N  N  13.322  24.311  -11.868  -10.105  -3.130  -2.061  N6    1OF   4  
1OF  N1    N2   N  0  1  Y  N  N   8.216  24.929  -14.879    7.733   1.918  -0.760  N1    1OF   5  
1OF  C2    C4   C  0  1  N  N  S  12.769  25.339   -4.076   -5.266   3.308  -0.199  C2    1OF   6  
1OF  N3    N3   N  0  1  Y  N  N  11.719  24.938  -16.071   10.263   0.630  -3.091  N3    1OF   7  
1OF  C4    C5   C  0  1  N  N  N  10.563  26.307   -4.905   -3.180   2.539   0.997  C4    1OF   8  
1OF  N     N4   N  0  1  Y  N  N   9.026  26.637  -13.667    7.007  -0.139  -0.811  N     1OF   9  
1OF  C     C6   C  0  1  N  N  R  12.215  23.823   -5.908   -5.845   1.095  -1.036  C     1OF  10  
1OF  O     O1   O  0  1  N  N  N   9.146  26.075   -4.787   -2.029   1.698   0.896  O     1OF  11  
1OF  C1    C7   C  0  1  N  N  R  13.363  24.654   -5.331   -6.454   2.485  -0.744  C1    1OF  12  
1OF  C10   C8   C  0  1  Y  N  N   7.953  25.849  -13.984    6.823   1.111  -0.299  C10   1OF  13  
1OF  C11   C9   C  0  1  Y  N  N   9.558  25.124  -15.162    8.557   1.240  -1.595  C11   1OF  14  
1OF  C12   C10  C  0  1  Y  N  N  10.072  26.164  -14.409    8.100  -0.088  -1.638  C12   1OF  15  
1OF  C13   C11  C  0  1  Y  N  N  12.080  25.939  -15.279    9.798  -0.606  -3.098  C13   1OF  16  
1OF  C14   C12  C  0  1  Y  N  N  10.440  24.491  -16.040    9.684   1.579  -2.363  C14   1OF  17  
1OF  C15   C13  C  0  1  Y  N  N  10.526  24.051   -7.704   -6.942  -0.322   0.560  C15   1OF  18  
1OF  C16   C14  C  0  1  Y  N  N  10.198  24.043   -9.013   -7.820  -1.300   0.938  C16   1OF  19  
1OF  C17   C15  C  0  1  Y  N  N  11.200  24.153  -10.027   -8.586  -1.927  -0.049  C17   1OF  20  
1OF  C18   C16  C  0  1  N  N  N  10.999  24.017  -11.421   -9.552  -2.981   0.244  C18   1OF  21  
1OF  C19   C17  C  0  1  N  N  N  12.081  24.078  -12.297  -10.260  -3.522  -0.764  C19   1OF  22  
1OF  C20   C18  C  0  1  N  N  N  13.609  24.493  -10.520   -9.229  -2.171  -2.426  C20   1OF  23  
1OF  C21   C19  C  0  1  Y  N  N  12.518  24.355   -9.592   -8.416  -1.519  -1.395  C21   1OF  24  
1OF  C22   C20  C  0  1  Y  N  N  12.776  24.363   -8.243   -7.497  -0.513  -1.683  C22   1OF  25  
1OF  C3    C21  C  0  1  N  N  R  11.261  25.152   -4.240   -4.078   2.320  -0.223  C3    1OF  26  
1OF  C7    C22  C  0  1  N  N  S   8.360  29.294  -11.213    5.580  -2.913   1.172  C7    1OF  27  
1OF  C9    C23  C  0  1  N  N  R   9.089  27.844  -12.860    6.187  -1.320  -0.531  C9    1OF  28  
1OF  N2    N5   N  0  1  Y  N  N  11.331  26.625  -14.417    8.746  -0.969  -2.396  N2    1OF  29  
1OF  N4    N6   N  0  1  N  N  N  10.074  23.506  -16.851   10.180   2.871  -2.360  N4    1OF  30  
1OF  N5    N7   N  1  1  Y  N  N  11.820  24.163   -7.295   -6.805   0.038  -0.706  N5    1OF  31  
1OF  O1    O2   O  0  1  N  N  N   8.312  26.904   -6.904    0.201   0.519   1.640  O1    1OF  32  
1OF  O10   O3   O  0  1  N  N  N  11.095  23.977   -5.058   -4.686   1.011  -0.171  O10   1OF  33  
1OF  O11   O4   O  0  1  N  N  N  13.202  24.801   -2.834   -5.002   4.428  -1.047  O11   1OF  34  
1OF  O12   O5   O  0  1  N  N  N  14.430  23.763   -5.028   -6.960   3.071  -1.945  O12   1OF  35  
1OF  O13   O6   O  0  1  N  N  N  14.732  24.834  -10.174   -9.115  -1.853  -3.595  O13   1OF  36  
1OF  O2    O7   O  0  1  N  N  N   6.451  25.860   -8.217    1.987   0.635   3.420  O2    1OF  37  
1OF  O3    O8   O  0  1  N  N  N   8.284  27.097   -9.393    2.397  -0.917   1.472  O3    1OF  38  
1OF  O4    O9   O  0  1  N  N  N   9.981  27.638  -11.779    4.901  -0.932   0.001  O4    1OF  39  
1OF  O5    O10  O  0  1  N  N  N   6.936  28.917  -13.194    7.781  -3.077   0.101  O5    1OF  40  
1OF  O6    O11  O  0  1  N  N  N   8.710  30.527  -11.831    5.509  -4.231   0.626  O6    1OF  41  
1OF  O7    O12  O  0  1  N  N  N   6.663  28.400   -7.989    0.601  -1.472   3.310  O7    1OF  42  
1OF  O8    O13  O  0  1  N  N  N   8.662  28.465   -4.944   -1.459   1.381   3.335  O8    1OF  43  
1OF  O9    O14  O  0  1  N  N  N   6.739  26.804   -4.937   -0.124   3.096   2.051  O9    1OF  44  
1OF  P     P1   P  0  1  N  N  N   8.126  27.149   -5.335   -0.866   1.667   2.010  P     1OF  45  
1OF  P1    P2   P  0  1  N  N  N   7.297  27.076   -8.132    1.311  -0.288   2.481  P1    1OF  46  
1OF  H6    H1   H  0  1  N  N  N   7.288  27.472  -11.713    7.252  -1.515   1.373  H6    1OF  47  
1OF  H52   H2   H  0  1  N  N  N  10.371  27.201   -9.275    3.277  -2.468   2.514  H52   1OF  48  
1OF  H51   H3   H  0  1  N  N  N   9.489  28.614   -8.602    4.175  -0.931   2.523  H51   1OF  49  
1OF  H4    H4   H  0  1  N  N  N  10.431  29.332  -10.654    3.746  -2.661   0.043  H4    1OF  50  
1OF  HN6   H5   H  0  1  N  N  N  14.066  24.356  -12.534  -10.640  -3.559  -2.746  HN6   1OF  51  
1OF  H2    H6   H  0  1  N  N  N  12.998  26.414   -4.124   -5.466   3.640   0.819  H2    1OF  52  
1OF  H42   H7   H  0  1  N  N  N  10.849  26.360   -5.966   -3.732   2.292   1.903  H42   1OF  53  
1OF  H41   H8   H  0  1  N  N  N  10.833  27.249   -4.405   -2.866   3.582   1.034  H41   1OF  54  
1OF  H     H9   H  0  1  N  N  N  12.531  22.770   -5.893   -5.545   1.024  -2.081  H     1OF  55  
1OF  H1    H10  H  0  1  N  N  N  13.673  25.419   -6.058   -7.241   2.407   0.006  H1    1OF  56  
1OF  H10   H11  H  0  1  N  N  N   6.978  25.974  -13.537    6.038   1.389   0.389  H10   1OF  57  
1OF  H13   H12  H  0  1  N  N  N  13.116  26.237  -15.341   10.299  -1.346  -3.705  H13   1OF  58  
1OF  H15   H13  H  0  1  N  N  N   9.744  23.967   -6.964   -6.346   0.169   1.314  H15   1OF  59  
1OF  H16   H14  H  0  1  N  N  N   9.161  23.952   -9.300   -7.919  -1.582   1.976  H16   1OF  60  
1OF  H18   H15  H  0  1  N  N  N  10.002  23.865  -11.808   -9.705  -3.315   1.260  H18   1OF  61  
1OF  H19   H16  H  0  1  N  N  N  11.910  23.932  -13.353  -10.979  -4.296  -0.537  H19   1OF  62  
1OF  H22   H17  H  0  1  N  N  N  13.791  24.537   -7.917   -7.352  -0.187  -2.702  H22   1OF  63  
1OF  H3    H18  H  0  1  N  N  N  10.815  24.985   -3.248   -3.504   2.439  -1.142  H3    1OF  64  
1OF  H5    H19  H  0  1  N  N  N   7.663  29.434  -10.374    5.619  -2.952   2.261  H5    1OF  65  
1OF  H7    H20  H  0  1  N  N  N   9.467  28.665  -13.487    6.066  -1.925  -1.430  H7    1OF  66  
1OF  HN41  H21  H  0  0  N  N  N  10.857  23.221  -17.404   10.959   3.093  -2.894  HN41  1OF  67  
1OF  HN42  H22  H  0  0  N  N  N   9.749  22.731  -16.309    9.748   3.555  -1.824  HN42  1OF  68  
1OF  HO11  H23  H  0  0  N  N  N  12.792  25.277   -2.122   -5.727   5.066  -1.092  HO11  1OF  69  
1OF  HO12  H24  H  0  0  N  N  N  15.159  24.253   -4.667   -7.354   3.945  -1.820  HO12  1OF  70  
1OF  HO5   H25  H  0  1  N  N  N   6.130  29.197  -12.776    8.135  -3.685   0.764  HO5   1OF  71  
1OF  HO6   H26  H  0  1  N  N  N   9.064  31.120  -11.178    6.271  -4.787   0.840  HO6   1OF  72  
1OF  H8    H27  H  0  1  N  N  N   5.719  28.299   -7.968    0.138  -2.116   2.758  H8    1OF  73  
1OF  H9    H28  H  0  1  N  N  N   6.359  27.527   -4.452    0.289   3.349   1.214  H9    1OF  74  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
1OF  N4   C14   SING  N  N   1  
1OF  N3   C14   DOUB  Y  N   2  
1OF  N3   C13   SING  Y  N   3  
1OF  C14  C11   SING  Y  N   4  
1OF  C13  N2    DOUB  Y  N   5  
1OF  C11  N1    SING  Y  N   6  
1OF  C11  C12   DOUB  Y  N   7  
1OF  N1   C10   DOUB  Y  N   8  
1OF  N2   C12   SING  Y  N   9  
1OF  C12  N     SING  Y  N  10  
1OF  C10  N     SING  Y  N  11  
1OF  N    C9    SING  N  N  12  
1OF  O5   C8    SING  N  N  13  
1OF  C9   C8    SING  N  N  14  
1OF  C9   O4    SING  N  N  15  
1OF  C19  N6    SING  N  N  16  
1OF  C19  C18   DOUB  N  N  17  
1OF  C8   C7    SING  N  N  18  
1OF  N6   C20   SING  N  N  19  
1OF  O6   C7    SING  N  N  20  
1OF  O4   C6    SING  N  N  21  
1OF  C18  C17   SING  N  N  22  
1OF  C7   C6    SING  N  N  23  
1OF  C6   C5    SING  N  N  24  
1OF  C20  O13   DOUB  N  N  25  
1OF  C20  C21   SING  N  N  26  
1OF  C17  C21   DOUB  Y  N  27  
1OF  C17  C16   SING  Y  N  28  
1OF  C21  C22   SING  Y  N  29  
1OF  C5   O3    SING  N  N  30  
1OF  O3   P1    SING  N  N  31  
1OF  C16  C15   DOUB  Y  N  32  
1OF  C22  N5    DOUB  Y  N  33  
1OF  O2   P1    DOUB  N  N  34  
1OF  P1   O7    SING  N  N  35  
1OF  P1   O1    SING  N  N  36  
1OF  C15  N5    SING  Y  N  37  
1OF  N5   C     SING  N  N  38  
1OF  O1   P     SING  N  N  39  
1OF  C    C1    SING  N  N  40  
1OF  C    O10   SING  N  N  41  
1OF  P    O8    DOUB  N  N  42  
1OF  P    O9    SING  N  N  43  
1OF  P    O     SING  N  N  44  
1OF  C1   O12   SING  N  N  45  
1OF  C1   C2    SING  N  N  46  
1OF  O10  C3    SING  N  N  47  
1OF  C4   O     SING  N  N  48  
1OF  C4   C3    SING  N  N  49  
1OF  C3   C2    SING  N  N  50  
1OF  C2   O11   SING  N  N  51  
1OF  C8   H6    SING  N  N  52  
1OF  C5   H52   SING  N  N  53  
1OF  C5   H51   SING  N  N  54  
1OF  C6   H4    SING  N  N  55  
1OF  N6   HN6   SING  N  N  56  
1OF  C2   H2    SING  N  N  57  
1OF  C4   H42   SING  N  N  58  
1OF  C4   H41   SING  N  N  59  
1OF  C    H     SING  N  N  60  
1OF  C1   H1    SING  N  N  61  
1OF  C10  H10   SING  N  N  62  
1OF  C13  H13   SING  N  N  63  
1OF  C15  H15   SING  N  N  64  
1OF  C16  H16   SING  N  N  65  
1OF  C18  H18   SING  N  N  66  
1OF  C19  H19   SING  N  N  67  
1OF  C22  H22   SING  N  N  68  
1OF  C3   H3    SING  N  N  69  
1OF  C7   H5    SING  N  N  70  
1OF  C9   H7    SING  N  N  71  
1OF  N4   HN41  SING  N  N  72  
1OF  N4   HN42  SING  N  N  73  
1OF  O11  HO11  SING  N  N  74  
1OF  O12  HO12  SING  N  N  75  
1OF  O5   HO5   SING  N  N  76  
1OF  O6   HO6   SING  N  N  77  
1OF  O7   H8    SING  N  N  78  
1OF  O9   H9    SING  N  N  79  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
1OF  SMILES            ACDLabs               12.01  "O=C1NC=Cc2cc[n+](cc21)C1OC(COP(=O)(O)OP(=O)(O)OCC2OC(n3cnc4c(N)ncnc43)C(O)C2O)C(O)C1O"  
1OF  InChI             InChI                 1.03   "InChI=1S/C23H27N7O14P2/c24-19-14-20(27-8-26-19)30(9-28-14)23-18(34)16(32)13(43-23)7-41-46(38,39)44-45(36,37)40-6-12-15(31)17(33)22(42-12)29-4-2-10-1-3-25-21(35)11(10)5-29/h1-5,8-9,12-13,15-18,22-23,31-34H,6-7H2,(H4,24,26,27,36,37,38,39)/p+1/t12-,13-,15-,16-,17-,18-,22-,23-/m1/s1"  
1OF  InChIKey          InChI                 1.03   HTQFBBFBGDSFCE-BSLNIGMPSA-O  
1OF  SMILES_CANONICAL  CACTVS                3.385  "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(=O)O[P](O)(=O)OC[C@H]4O[C@H]([C@H](O)[C@@H]4O)[n+]5ccc6C=CNC(=O)c6c5)[C@@H](O)[C@H]3O"  
1OF  SMILES            CACTVS                3.385  "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]4O[CH]([CH](O)[CH]4O)[n+]5ccc6C=CNC(=O)c6c5)[CH](O)[CH]3O"  
1OF  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1c[n+](cc2c1C=CNC2=O)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)OC[C@@H]4[C@H]([C@H]([C@@H](O4)n5cnc6c5ncnc6N)O)O)O)O"  
1OF  SMILES            "OpenEye OEToolkits"  2.0.7  "c1c[n+](cc2c1C=CNC2=O)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OCC4C(C(C(O4)n5cnc6c5ncnc6N)O)O)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
1OF  "SYSTEMATIC NAME"  ACDLabs               12.01  "2-[(2R,3R,4S,5R)-5-({[(S)-{[(S)-{[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]oxy}methyl)-3,4-dihydroxyoxolan-2-yl]-8-oxo-7,8-dihydro-2,7-naphthyridin-2-ium (non-preferred name)"  
1OF  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-3,4-bis(oxidanyl)-5-(8-oxidanylidene-7~{H}-2,7-naphthyridin-2-ium-2-yl)oxolan-2-yl]methyl hydrogen phosphate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
1OF  "Create component"      2021-06-23  RCSB  
1OF  "Modify aromatic_flag"  2022-03-03  RCSB  
1OF  "Initial release"       2022-03-23  RCSB  
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