data_YYD
# 
_chem_comp.id                                    YYD 
_chem_comp.name                                  6-amino-6-deoxy-alpha-D-glucopyranose 
_chem_comp.type                                  D-saccharide 
_chem_comp.pdbx_type                             ATOMS 
_chem_comp.formula                               "C6 H13 N O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2012-12-17 
_chem_comp.pdbx_modified_date                    2023-09-22 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        179.171 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YYD 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        2G5Q 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YYD C1   C1   C 0 1 N N S 25.990 6.502 5.145 0.536  -1.573 -0.242 C1   YYD 1  
YYD C2   C2   C 0 1 N N R 26.165 4.990 4.753 1.555  -0.474 -0.554 C2   YYD 2  
YYD C3   C3   C 0 1 N N S 26.252 4.822 3.209 1.167  0.801  0.201  C3   YYD 3  
YYD C4   C4   C 0 1 N N S 24.918 5.379 2.605 -0.258 1.201  -0.192 C4   YYD 4  
YYD C5   C5   C 0 1 N N R 24.771 6.906 3.006 -1.207 0.037  0.106  C5   YYD 5  
YYD C6   C6   C 0 1 N N N 23.476 7.529 2.486 -2.623 0.406  -0.340 C6   YYD 6  
YYD N6   N6   N 0 1 N N N 23.024 8.686 3.314 -3.554 -0.660 0.054  N6   YYD 7  
YYD O1   O1   O 0 1 N Y N 27.145 7.221 4.718 0.569  -1.870 1.155  O1   YYD 8  
YYD O2   O2   O 0 1 N N N 27.375 4.472 5.380 2.856  -0.897 -0.141 O2   YYD 9  
YYD O3   O3   O 0 1 N N N 26.405 3.480 2.917 2.070  1.854  -0.142 O3   YYD 10 
YYD O4   O4   O 0 1 N N N 24.930 5.233 1.171 -0.658 2.347  0.561  O4   YYD 11 
YYD O5   O5   O 0 1 N N N 24.769 7.041 4.500 -0.771 -1.125 -0.604 O5   YYD 12 
YYD H1   H1   H 0 1 N N N 25.885 6.565 6.238 0.784  -2.470 -0.811 H1   YYD 13 
YYD HO1  H1O  H 0 1 N Y N 27.051 8.138 4.949 -0.052 -2.560 1.425  H1O  YYD 14 
YYD H2   H2   H 0 1 N N N 25.288 4.434 5.117 1.559  -0.275 -1.626 H2   YYD 15 
YYD HO2  H2O  H 0 1 N N N 27.487 3.558 5.147 3.164  -1.703 -0.576 H2O  YYD 16 
YYD H3   H3   H 0 1 N N N 27.094 5.419 2.828 1.211  0.616  1.274  H3   YYD 17 
YYD HO3  H3O  H 0 1 N N N 26.459 3.364 1.976 2.994  1.665  0.074  H3O  YYD 18 
YYD H4   H4   H 0 1 N N N 24.075 4.822 3.040 -0.290 1.434  -1.257 H4   YYD 19 
YYD HO4  H4O  H 0 1 N N N 24.119 5.572 0.811 -0.097 3.123  0.424  H4O  YYD 20 
YYD H5   H5   H 0 1 N N N 25.627 7.457 2.590 -1.205 -0.169 1.176  H5   YYD 21 
YYD H61  H61  H 0 1 N N N 23.641 7.876 1.455 -2.921 1.341  0.133  H61  YYD 22 
YYD H62  H62  H 0 1 N N N 22.688 6.761 2.493 -2.644 0.524  -1.423 H62  YYD 23 
YYD H6N1 H6N1 H 0 0 N N N 22.177 9.057 2.935 -4.497 -0.440 -0.230 H6N1 YYD 24 
YYD H6N2 H6N2 H 0 0 N N N 22.863 8.381 4.253 -3.263 -1.551 -0.320 H6N2 YYD 25 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YYD C1 O1   SING N N 1  
YYD C1 C2   SING N N 2  
YYD C1 O5   SING N N 3  
YYD C1 H1   SING N N 4  
YYD C2 C3   SING N N 5  
YYD C2 O2   SING N N 6  
YYD C2 H2   SING N N 7  
YYD C3 C4   SING N N 8  
YYD C3 O3   SING N N 9  
YYD C3 H3   SING N N 10 
YYD C4 O4   SING N N 11 
YYD C4 C5   SING N N 12 
YYD C4 H4   SING N N 13 
YYD C5 O5   SING N N 14 
YYD C5 C6   SING N N 15 
YYD C5 H5   SING N N 16 
YYD C6 N6   SING N N 17 
YYD C6 H61  SING N N 18 
YYD C6 H62  SING N N 19 
YYD N6 H6N1 SING N N 20 
YYD N6 H6N2 SING N N 21 
YYD O1 HO1  SING N N 22 
YYD O2 HO2  SING N N 23 
YYD O3 HO3  SING N N 24 
YYD O4 HO4  SING N N 25 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YYD SMILES           ACDLabs              12.01 "OC1C(O)C(OC(O)C1O)CN"                                                                   
YYD InChI            InChI                1.03  "InChI=1S/C6H13NO5/c7-1-2-3(8)4(9)5(10)6(11)12-2/h2-6,8-11H,1,7H2/t2-,3-,4+,5-,6+/m1/s1" 
YYD InChIKey         InChI                1.03  FXVPOMKTIZKCTJ-DVKNGEFBSA-N                                                              
YYD SMILES_CANONICAL CACTVS               3.370 "NC[C@H]1O[C@H](O)[C@H](O)[C@@H](O)[C@@H]1O"                                             
YYD SMILES           CACTVS               3.370 "NC[CH]1O[CH](O)[CH](O)[CH](O)[CH]1O"                                                    
YYD SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C([C@@H]1[C@H]([C@@H]([C@H]([C@H](O1)O)O)O)O)N"                                         
YYD SMILES           "OpenEye OEToolkits" 1.7.6 "C(C1C(C(C(C(O1)O)O)O)O)N"                                                               
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YYD "SYSTEMATIC NAME" ACDLabs              12.01 6-amino-6-deoxy-alpha-D-glucopyranose                  
YYD "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2S,3R,4S,5S,6R)-6-(aminomethyl)oxane-2,3,4,5-tetrol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YYD "Create component" 2012-12-17 RCSB 
YYD "Modify atom id"   2013-02-04 RCSB 
YYD "Modify atom id"   2020-07-24 RCSB 
YYD "Initial release"  2023-09-27 RCSB 
# 
