data_YUD
# 
_chem_comp.id                                    YUD 
_chem_comp.name                                  "(3R,3aS,6aR)-hexahydrofuro[2,3-b]furan-3-yl [(2S,3R)-3-hydroxy-4-{[(1S)-1-hydroxy-2,3-dihydro-1H-indene-5-sulfonyl][(2S)-2-methylbutyl]amino}-1-phenylbutan-2-yl]carbamate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C31 H42 N2 O8 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-03-31 
_chem_comp.pdbx_modified_date                    2022-08-26 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        602.739 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YUD 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7M9W 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YUD C10  C1  C 0 1 N N N 19.118 -1.471 14.468 1.598  -1.675 -0.667 C10  YUD 1  
YUD C13  C2  C 0 1 N N S 19.701 -0.056 16.393 -0.749 -0.820 -0.638 C13  YUD 2  
YUD C15  C3  C 0 1 N N N 21.641 0.551  17.978 -3.062 -0.385 -0.005 C15  YUD 3  
YUD C21  C4  C 0 1 N N S 22.936 2.406  20.415 -6.294 1.133  0.775  C21  YUD 4  
YUD C22  C5  C 0 1 N N R 23.541 3.818  20.062 -7.497 0.530  1.542  C22  YUD 5  
YUD C24  C6  C 0 1 N N N 21.298 3.741  19.678 -6.762 2.319  2.819  C24  YUD 6  
YUD C26  C7  C 0 1 N N N 18.366 0.682  16.483 -0.574 -0.106 -1.980 C26  YUD 7  
YUD C28  C8  C 0 1 Y N N 17.801 0.105  19.023 -2.061 -1.265 -3.626 C28  YUD 8  
YUD C01  C9  C 0 1 Y N N 15.318 -4.845 13.406 4.831  2.269  1.599  C01  YUD 9  
YUD C02  C10 C 0 1 Y N N 16.134 -3.896 14.287 4.812  0.942  1.212  C02  YUD 10 
YUD C03  C11 C 0 1 Y N N 17.287 -4.498 15.061 4.260  0.586  -0.004 C03  YUD 11 
YUD C04  C12 C 0 1 Y N N 17.686 -5.957 14.969 3.728  1.556  -0.830 C04  YUD 12 
YUD C09  C13 C 0 1 N N N 20.318 -3.813 14.446 2.856  -2.457 1.393  C09  YUD 13 
YUD C11  C14 C 0 1 N N R 20.062 -0.375 14.940 0.585  -0.833 0.111  C11  YUD 14 
YUD C18  C15 C 0 1 N N R 23.309 1.536  19.490 -5.375 -0.079 0.497  C18  YUD 15 
YUD C19  C16 C 0 1 N N N 24.768 2.068  18.990 -5.873 -1.117 1.534  C19  YUD 16 
YUD C23  C17 C 0 1 N N N 21.477 2.663  20.400 -5.615 2.062  1.808  C23  YUD 17 
YUD C27  C18 C 0 1 Y N N 18.160 1.100  17.936 -1.854 -0.200 -2.770 C27  YUD 18 
YUD C29  C19 C 0 1 Y N N 17.613 0.575  20.439 -3.235 -1.352 -4.351 C29  YUD 19 
YUD C30  C20 C 0 1 Y N N 17.742 2.015  20.765 -4.205 -0.375 -4.215 C30  YUD 20 
YUD C31  C21 C 0 1 Y N N 18.062 2.993  19.681 -4.000 0.687  -3.354 C31  YUD 21 
YUD C32  C22 C 0 1 Y N N 18.279 2.538  18.278 -2.821 0.779  -2.638 C32  YUD 22 
YUD C33  C23 C 0 1 N N S 21.844 -3.469 14.463 3.047  -3.959 1.173  C33  YUD 23 
YUD C34  C24 C 0 1 N N N 22.605 -4.492 13.649 2.936  -4.689 2.513  C34  YUD 24 
YUD C35  C25 C 0 1 N N N 22.344 -3.381 15.896 4.429  -4.214 0.567  C35  YUD 25 
YUD C36  C26 C 0 1 N N N 16.062 -8.557 12.542 3.911  5.306  -0.447 C36  YUD 26 
YUD C37  C27 C 0 1 N N N 16.971 -8.354 13.744 3.236  4.120  -1.157 C37  YUD 27 
YUD C38  C28 C 0 1 Y N N 16.843 -6.856 14.063 3.746  2.886  -0.445 C38  YUD 28 
YUD C39  C29 C 0 1 Y N N 15.677 -6.317 13.330 4.293  3.242  0.774  C39  YUD 29 
YUD C40  C30 C 0 1 N N S 15.061 -7.425 12.560 4.191  4.740  0.962  C40  YUD 30 
YUD C42  C31 C 0 1 N N N 22.583 -5.871 14.370 3.003  -6.200 2.278  C42  YUD 31 
YUD N08  N1  N 0 1 N N N 19.511 -2.782 15.117 2.843  -1.771 0.099  N08  YUD 32 
YUD N14  N2  N 0 1 N N N 20.703 0.860  16.877 -1.752 -0.114 0.163  N14  YUD 33 
YUD O06  O1  O 0 1 N N N 17.468 -2.380 16.632 4.107  -1.107 -1.914 O06  YUD 34 
YUD O07  O2  O 0 1 N N N 18.965 -4.225 17.160 5.310  -1.739 0.184  O07  YUD 35 
YUD O12  O3  O 0 1 N N N 19.887 0.751  14.136 1.074  0.504  0.236  O12  YUD 36 
YUD O16  O4  O 0 1 N N N 21.646 -0.517 18.482 -3.410 -1.214 -0.821 O16  YUD 37 
YUD O17  O5  O 0 1 N N N 22.530 1.621  18.304 -3.983 0.264  0.732  O17  YUD 38 
YUD O20  O6  O 0 1 N N N 24.496 3.405  18.918 -7.291 -0.893 1.586  O20  YUD 39 
YUD O25  O7  O 0 1 N N N 22.663 4.587  19.632 -7.452 1.059  2.878  O25  YUD 40 
YUD O41  O8  O 0 1 N N N 14.857 -6.928 11.312 5.414  5.271  1.476  O41  YUD 41 
YUD S05  S1  S 0 1 N N N 18.304 -3.438 16.126 4.236  -1.105 -0.499 S05  YUD 42 
YUD H102 H1  H 0 0 N N N 18.086 -1.215 14.751 1.192  -2.674 -0.828 H102 YUD 43 
YUD H101 H2  H 0 0 N N N 19.184 -1.568 13.374 1.799  -1.205 -1.630 H101 YUD 44 
YUD H131 H3  H 0 0 N N N 19.670 -0.979 16.991 -1.078 -1.844 -0.812 H131 YUD 45 
YUD H211 H4  H 0 0 N N N 23.262 2.120  21.426 -6.588 1.657  -0.135 H211 YUD 46 
YUD H221 H5  H 0 0 N N N 24.119 4.197  20.918 -8.440 0.776  1.053  H221 YUD 47 
YUD H241 H6  H 0 0 N N N 20.502 4.354  20.125 -6.359 2.586  3.796  H241 YUD 48 
YUD H242 H7  H 0 0 N N N 21.010 3.454  18.656 -7.429 3.099  2.453  H242 YUD 49 
YUD H261 H8  H 0 0 N N N 18.386 1.572  15.837 -0.331 0.942  -1.805 H261 YUD 50 
YUD H262 H9  H 0 0 N N N 17.549 0.017  16.166 0.234  -0.577 -2.539 H262 YUD 51 
YUD H281 H10 H 0 0 N N N 17.680 -0.940 18.780 -1.304 -2.028 -3.732 H281 YUD 52 
YUD H011 H11 H 0 0 N N N 14.483 -4.465 12.836 5.262  2.547  2.549  H011 YUD 53 
YUD H021 H12 H 0 0 N N N 15.898 -2.844 14.353 5.229  0.185  1.860  H021 YUD 54 
YUD H041 H13 H 0 0 N N N 18.530 -6.346 15.520 3.297  1.277  -1.780 H041 YUD 55 
YUD H091 H14 H 0 0 N N N 19.985 -3.899 13.401 1.910  -2.283 1.906  H091 YUD 56 
YUD H092 H15 H 0 0 N N N 20.165 -4.773 14.960 3.675  -2.072 2.001  H092 YUD 57 
YUD H111 H16 H 0 0 N N N 21.099 -0.740 14.895 0.441  -1.262 1.102  H111 YUD 58 
YUD H181 H17 H 0 0 N N N 23.403 0.503  19.856 -5.515 -0.447 -0.519 H181 YUD 59 
YUD H192 H18 H 0 0 N N N 25.046 1.650  18.011 -5.652 -2.131 1.199  H192 YUD 60 
YUD H191 H19 H 0 0 N N N 25.560 1.847  19.721 -5.426 -0.930 2.510  H191 YUD 61 
YUD H232 H20 H 0 0 N N N 21.109 2.826  21.424 -4.780 1.553  2.289  H232 YUD 62 
YUD H231 H21 H 0 0 N N N 20.945 1.811  19.950 -5.289 2.994  1.347  H231 YUD 63 
YUD H291 H22 H 0 0 N N N 17.384 -0.137 21.218 -3.395 -2.181 -5.023 H291 YUD 64 
YUD H301 H23 H 0 0 N N N 17.605 2.356  21.781 -5.122 -0.443 -4.781 H301 YUD 65 
YUD H311 H24 H 0 0 N N N 18.137 4.044  19.917 -4.757 1.449  -3.248 H311 YUD 66 
YUD H321 H25 H 0 0 N N N 18.523 3.257  17.510 -2.660 1.611  -1.969 H321 YUD 67 
YUD H331 H26 H 0 0 N N N 21.972 -2.484 13.991 2.279  -4.327 0.494  H331 YUD 68 
YUD H341 H27 H 0 0 N N N 23.647 -4.160 13.530 3.758  -4.386 3.161  H341 YUD 69 
YUD H342 H28 H 0 0 N N N 22.136 -4.591 12.659 1.988  -4.437 2.987  H342 YUD 70 
YUD H351 H29 H 0 0 N N N 21.760 -2.626 16.443 4.508  -3.693 -0.388 H351 YUD 71 
YUD H353 H30 H 0 0 N N N 22.228 -4.359 16.385 5.198  -3.845 1.246  H353 YUD 72 
YUD H352 H31 H 0 0 N N N 23.406 -3.094 15.897 4.565  -5.284 0.410  H352 YUD 73 
YUD H361 H32 H 0 0 N N N 15.543 -9.524 12.618 4.842  5.568  -0.951 H361 YUD 74 
YUD H362 H33 H 0 0 N N N 16.650 -8.529 11.613 3.243  6.166  -0.393 H362 YUD 75 
YUD H371 H34 H 0 0 N N N 16.635 -8.964 14.595 2.152  4.186  -1.055 H371 YUD 76 
YUD H372 H35 H 0 0 N N N 18.011 -8.613 13.495 3.517  4.100  -2.210 H372 YUD 77 
YUD H401 H36 H 0 0 N N N 14.127 -7.754 13.039 3.365  4.974  1.634  H401 YUD 78 
YUD H421 H37 H 0 0 N N N 23.138 -6.608 13.771 2.924  -6.720 3.232  H421 YUD 79 
YUD H422 H38 H 0 0 N N N 23.053 -5.775 15.360 2.181  -6.503 1.629  H422 YUD 80 
YUD H423 H39 H 0 0 N N N 21.542 -6.206 14.489 3.952  -6.452 1.804  H423 YUD 81 
YUD H141 H40 H 0 0 N N N 20.768 1.758  16.442 -1.474 0.548  0.815  H141 YUD 82 
YUD H121 H41 H 0 0 N N N 20.473 1.441  14.424 1.237  0.944  -0.609 H121 YUD 83 
YUD H411 H42 H 0 0 N N N 14.225 -6.220 11.352 5.642  4.951  2.359  H411 YUD 84 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YUD O41 C40  SING N N 1  
YUD C36 C40  SING N N 2  
YUD C36 C37  SING N N 3  
YUD C40 C39  SING N N 4  
YUD C39 C01  DOUB Y N 5  
YUD C39 C38  SING Y N 6  
YUD C01 C02  SING Y N 7  
YUD C34 C42  SING N N 8  
YUD C34 C33  SING N N 9  
YUD C37 C38  SING N N 10 
YUD C38 C04  DOUB Y N 11 
YUD O12 C11  SING N N 12 
YUD C02 C03  DOUB Y N 13 
YUD C09 C33  SING N N 14 
YUD C09 N08  SING N N 15 
YUD C33 C35  SING N N 16 
YUD C10 C11  SING N N 17 
YUD C10 N08  SING N N 18 
YUD C11 C13  SING N N 19 
YUD C04 C03  SING Y N 20 
YUD C03 S05  SING N N 21 
YUD N08 S05  SING N N 22 
YUD S05 O06  DOUB N N 23 
YUD S05 O07  DOUB N N 24 
YUD C13 C26  SING N N 25 
YUD C13 N14  SING N N 26 
YUD C26 C27  SING N N 27 
YUD N14 C15  SING N N 28 
YUD C27 C32  DOUB Y N 29 
YUD C27 C28  SING Y N 30 
YUD C15 O17  SING N N 31 
YUD C15 O16  DOUB N N 32 
YUD C32 C31  SING Y N 33 
YUD O17 C18  SING N N 34 
YUD O20 C19  SING N N 35 
YUD O20 C22  SING N N 36 
YUD C19 C18  SING N N 37 
YUD C28 C29  DOUB Y N 38 
YUD C18 C21  SING N N 39 
YUD O25 C24  SING N N 40 
YUD O25 C22  SING N N 41 
YUD C24 C23  SING N N 42 
YUD C31 C30  DOUB Y N 43 
YUD C22 C21  SING N N 44 
YUD C23 C21  SING N N 45 
YUD C29 C30  SING Y N 46 
YUD C10 H102 SING N N 47 
YUD C10 H101 SING N N 48 
YUD C13 H131 SING N N 49 
YUD C21 H211 SING N N 50 
YUD C22 H221 SING N N 51 
YUD C24 H241 SING N N 52 
YUD C24 H242 SING N N 53 
YUD C26 H261 SING N N 54 
YUD C26 H262 SING N N 55 
YUD C28 H281 SING N N 56 
YUD C01 H011 SING N N 57 
YUD C02 H021 SING N N 58 
YUD C04 H041 SING N N 59 
YUD C09 H091 SING N N 60 
YUD C09 H092 SING N N 61 
YUD C11 H111 SING N N 62 
YUD C18 H181 SING N N 63 
YUD C19 H192 SING N N 64 
YUD C19 H191 SING N N 65 
YUD C23 H232 SING N N 66 
YUD C23 H231 SING N N 67 
YUD C29 H291 SING N N 68 
YUD C30 H301 SING N N 69 
YUD C31 H311 SING N N 70 
YUD C32 H321 SING N N 71 
YUD C33 H331 SING N N 72 
YUD C34 H341 SING N N 73 
YUD C34 H342 SING N N 74 
YUD C35 H351 SING N N 75 
YUD C35 H353 SING N N 76 
YUD C35 H352 SING N N 77 
YUD C36 H361 SING N N 78 
YUD C36 H362 SING N N 79 
YUD C37 H371 SING N N 80 
YUD C37 H372 SING N N 81 
YUD C40 H401 SING N N 82 
YUD C42 H421 SING N N 83 
YUD C42 H422 SING N N 84 
YUD C42 H423 SING N N 85 
YUD N14 H141 SING N N 86 
YUD O12 H121 SING N N 87 
YUD O41 H411 SING N N 88 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YUD SMILES           ACDLabs              12.01 "OC1CCc2cc(ccc21)S(=O)(=O)N(CC(C)CC)CC(O)C(Cc1ccccc1)NC(=O)OC1COC2OCCC12"                                                                                                                                                                                      
YUD InChI            InChI                1.03  "InChI=1S/C31H42N2O8S/c1-3-20(2)17-33(42(37,38)23-10-11-24-22(16-23)9-12-27(24)34)18-28(35)26(15-21-7-5-4-6-8-21)32-31(36)41-29-19-40-30-25(29)13-14-39-30/h4-8,10-11,16,20,25-30,34-35H,3,9,12-15,17-19H2,1-2H3,(H,32,36)/t20-,25-,26-,27-,28+,29-,30+/m0/s1" 
YUD InChIKey         InChI                1.03  HRBACQIPGZSMKH-YYVMTJSFSA-N                                                                                                                                                                                                                                    
YUD SMILES_CANONICAL CACTVS               3.385 "CC[C@H](C)CN(C[C@@H](O)[C@H](Cc1ccccc1)NC(=O)O[C@H]2CO[C@H]3OCC[C@@H]23)[S](=O)(=O)c4ccc5[C@@H](O)CCc5c4"                                                                                                                                                     
YUD SMILES           CACTVS               3.385 "CC[CH](C)CN(C[CH](O)[CH](Cc1ccccc1)NC(=O)O[CH]2CO[CH]3OCC[CH]23)[S](=O)(=O)c4ccc5[CH](O)CCc5c4"                                                                                                                                                               
YUD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC[C@H](C)CN(C[C@H]([C@H](Cc1ccccc1)NC(=O)O[C@H]2CO[C@@H]3[C@H]2CCO3)O)S(=O)(=O)c4ccc5c(c4)CC[C@@H]5O"                                                                                                                                                        
YUD SMILES           "OpenEye OEToolkits" 2.0.7 "CCC(C)CN(CC(C(Cc1ccccc1)NC(=O)OC2COC3C2CCO3)O)S(=O)(=O)c4ccc5c(c4)CCC5O"                                                                                                                                                                                      
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YUD "SYSTEMATIC NAME" ACDLabs              12.01 "(3R,3aS,6aR)-hexahydrofuro[2,3-b]furan-3-yl [(2S,3R)-3-hydroxy-4-{[(1S)-1-hydroxy-2,3-dihydro-1H-indene-5-sulfonyl][(2S)-2-methylbutyl]amino}-1-phenylbutan-2-yl]carbamate"                                                                 
YUD "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(3~{a}~{S},4~{R},6~{a}~{R})-2,3,3~{a},4,5,6~{a}-hexahydrofuro[2,3-b]furan-4-yl] ~{N}-[(2~{S},3~{R})-4-[[(2~{S})-2-methylbutyl]-[[(1~{S})-1-oxidanyl-2,3-dihydro-1~{H}-inden-5-yl]sulfonyl]amino]-3-oxidanyl-1-phenyl-butan-2-yl]carbamate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YUD "Create component" 2021-03-31 RCSB 
YUD "Initial release"  2022-08-31 RCSB 
# 
