data_SID
#

_chem_comp.id                                   SID
_chem_comp.name                                 "methyl 9-S-acetyl-5-acetamido-3,5-dideoxy-9-thio-D-glycero-alpha-D-galacto-non-2-ulopyranosidonic acid"
_chem_comp.type                                 D-saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C14 H23 N O9 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        
;methyl 9-S-acetyl-5-(acetylamino)-3,5-dideoxy-9-thio-D-glycero-alpha-D-galacto-non-2-ulopyranosidonic acid;
5-N-acetyl-9-S-acetyl-9-thioneuraminic acid methyl glycoside; methyl
9-S-acetyl-5-acetamido-3,5-dideoxy-9-thio-D-glycero-alpha-D-galacto-non-2-ulosidonic acid; methyl
9-S-acetyl-5-acetamido-3,5-dideoxy-9-thio-D-glycero-D-galacto-non-2-ulosidonic acid; methyl
9-S-acetyl-5-acetamido-3,5-dideoxy-9-thio-D-glycero-galacto-non-2-ulosidonic acid
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2009-07-24
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       381.399
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    SID
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3I27
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  SID  "methyl 9-S-acetyl-5-(acetylamino)-3,5-dideoxy-9-thio-D-glycero-alpha-D-galacto-non-2-ulopyranosidonic acid"  PDB  ?  
2  SID  "5-N-acetyl-9-S-acetyl-9-thioneuraminic acid methyl glycoside"                                                PDB  ?  
3  SID  "methyl 9-S-acetyl-5-acetamido-3,5-dideoxy-9-thio-D-glycero-alpha-D-galacto-non-2-ulosidonic acid"            PDB  ?  
4  SID  "methyl 9-S-acetyl-5-acetamido-3,5-dideoxy-9-thio-D-glycero-D-galacto-non-2-ulosidonic acid"                  PDB  ?  
5  SID  "methyl 9-S-acetyl-5-acetamido-3,5-dideoxy-9-thio-D-glycero-galacto-non-2-ulosidonic acid"                    PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
SID  C1    C1    C  0  1  N  N  N  40.388  26.675  -31.889   2.094   2.275   1.170  C1    SID   1  
SID  O1A   O1    O  0  1  N  N  N  39.227  26.571  -32.358   2.053   3.425   1.538  O1A   SID   2  
SID  C2    C2    C  0  1  N  N  R  40.631  27.752  -30.810   1.965   1.947  -0.295  C2    SID   3  
SID  O2    O2    O  0  1  N  N  N  40.527  27.143  -29.480   1.897   3.159  -1.051  O2    SID   4  
SID  C3    C3    C  0  1  N  N  N  42.038  28.390  -30.991   3.180   1.132  -0.746  C3    SID   5  
SID  O1B   O3    O  0  1  N  N  N  41.364  25.965  -32.214   2.261   1.289   2.066  O1B   SID   6  
SID  C4    C4    C  0  1  N  N  S  42.107  29.389  -32.189   3.211  -0.191   0.025  C4    SID   7  
SID  O4    O4    O  0  1  N  N  N  43.341  30.125  -32.174   4.300  -0.990  -0.441  O4    SID   8  
SID  C5    C5    C  0  1  N  N  R  40.926  30.373  -32.218   1.893  -0.936  -0.206  C5    SID   9  
SID  N5    N5    N  0  1  N  N  N  40.906  31.156  -33.474   1.882  -2.168   0.585  N5    SID  10  
SID  C6    C6    C  0  1  N  N  R  39.662  29.544  -32.130   0.728  -0.041   0.223  C6    SID  11  
SID  O6    O6    O  0  1  N  N  N  39.609  28.791  -30.893   0.775   1.185  -0.510  O6    SID  12  
SID  C7    C7    C  0  1  N  N  R  38.431  30.424  -32.115  -0.595  -0.755  -0.061  C7    SID  13  
SID  O7    O7    O  0  1  N  N  N  38.485  31.385  -31.039  -0.646  -1.134  -1.438  O7    SID  14  
SID  C8    C8    C  0  1  N  N  S  37.249  29.511  -31.910  -1.760   0.187   0.251  C8    SID  15  
SID  O8    O8    O  0  1  N  N  N  36.994  28.791  -33.133  -1.710   0.566   1.628  O8    SID  16  
SID  C9    C9    C  0  1  N  N  N  36.068  30.369  -31.497  -3.083  -0.527  -0.033  C9    SID  17  
SID  S9    S9    S  0  1  N  N  N  34.526  29.695  -32.165  -4.455   0.632   0.195  S9    SID  18  
SID  C10   C10   C  0  1  N  N  N  41.041  32.484  -33.524   2.450  -3.289   0.097  C10   SID  19  
SID  O10   O10   O  0  1  N  N  N  41.180  33.203  -32.540   2.972  -3.276  -0.998  O10   SID  20  
SID  C11   C11   C  0  1  N  N  N  41.003  33.089  -34.925   2.438  -4.556   0.912  C11   SID  21  
SID  CA9   CA9   C  0  1  N  N  N  34.129  30.868  -33.388  -5.775  -0.394  -0.175  CA9   SID  22  
SID  OA9   OA9   O  0  1  N  N  N  33.433  31.833  -33.083  -5.577  -1.551  -0.481  OA9   SID  23  
SID  CM2   CM2   C  0  1  N  N  N  39.267  26.490  -29.215   1.654   2.962  -2.445  CM2   SID  24  
SID  CM9   CM9   C  0  1  N  N  N  34.610  30.648  -34.826  -7.183   0.141  -0.122  CM9   SID  25  
SID  H32   H3    H  0  1  N  N  N  42.290  28.937  -30.070   3.107   0.929  -1.814  H32   SID  26  
SID  H31   H3A   H  0  1  N  N  N  42.762  27.582  -31.173   4.091   1.695  -0.543  H31   SID  27  
SID  HO1B  HO3   H  0  0  N  N  N  41.093  25.334  -32.871   2.339   1.548   2.994  HO1B  SID  28  
SID  H4    H4    H  0  1  N  N  N  42.051  28.774  -33.099   3.336   0.010   1.089  H4    SID  29  
SID  HO4   HO4   H  0  1  N  Y  N  43.361  30.725  -32.910   5.167  -0.576  -0.331  HO4   SID  30  
SID  H5    H5    H  0  1  N  N  N  41.013  31.085  -31.384   1.794  -1.181  -1.264  H5    SID  31  
SID  HN5   HN5   H  0  1  N  N  N  40.784  30.662  -34.335   1.465  -2.178   1.461  HN5   SID  32  
SID  H6    H6    H  0  1  N  N  N  39.679  28.880  -33.007   0.805   0.170   1.290  H6    SID  33  
SID  H7    H7    H  0  1  N  N  N  38.359  30.988  -33.057  -0.670  -1.645   0.564  H7    SID  34  
SID  HO7   HO7   H  0  1  N  Y  N  37.702  31.922  -31.054  -0.585  -0.391  -2.053  HO7   SID  35  
SID  H8    H8    H  0  1  N  N  N  37.439  28.767  -31.122  -1.686   1.077  -0.374  H8    SID  36  
SID  HO8   HO8   H  0  1  N  Y  N  36.250  28.213  -33.011  -1.771  -0.177   2.243  HO8   SID  37  
SID  H92   H9    H  0  1  N  N  N  36.005  30.391  -30.399  -3.085  -0.894  -1.059  H92   SID  38  
SID  H91   H9A   H  0  1  N  N  N  36.212  31.389  -31.883  -3.198  -1.366   0.653  H91   SID  39  
SID  H111  H11   H  0  0  N  N  N  41.115  34.181  -34.856   1.930  -4.375   1.859  H111  SID  40  
SID  H113  H11A  H  0  0  N  N  N  41.825  32.673  -35.526   1.913  -5.337   0.361  H113  SID  41  
SID  H112  H11B  H  0  0  N  N  N  40.042  32.848  -35.402   3.463  -4.874   1.105  H112  SID  42  
SID  HM2   HM2   H  0  1  N  N  N  39.280  26.065  -28.200   2.504   2.447  -2.893  HM2   SID  43  
SID  HM2A  HM2A  H  0  0  N  N  N  38.450  27.223  -29.295   0.755   2.359  -2.575  HM2A  SID  44  
SID  HM2B  HM2B  H  0  0  N  N  N  39.110  25.685  -29.948   1.517   3.928  -2.930  HM2B  SID  45  
SID  HM9   HM9   H  0  1  N  N  N  34.236  31.460  -35.467  -7.161   1.192   0.169  HM9   SID  46  
SID  HM9A  HM9A  H  0  0  N  N  N  35.710  30.641  -34.848  -7.646   0.045  -1.104  HM9A  SID  47  
SID  HM9B  HM9B  H  0  0  N  N  N  34.230  29.684  -35.196  -7.759  -0.426   0.609  HM9B  SID  48  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
SID  O1A  C1    DOUB  N  N   1  
SID  O1B  C1    SING  N  N   2  
SID  C1   C2    SING  N  N   3  
SID  C3   C2    SING  N  N   4  
SID  O6   C2    SING  N  N   5  
SID  C2   O2    SING  N  N   6  
SID  O2   CM2   SING  N  N   7  
SID  C4   C3    SING  N  N   8  
SID  C3   H32   SING  N  N   9  
SID  C3   H31   SING  N  N  10  
SID  O1B  HO1B  SING  N  N  11  
SID  C5   C4    SING  N  N  12  
SID  C4   O4    SING  N  N  13  
SID  C4   H4    SING  N  N  14  
SID  O4   HO4   SING  N  N  15  
SID  N5   C5    SING  N  N  16  
SID  C5   C6    SING  N  N  17  
SID  C5   H5    SING  N  N  18  
SID  C10  N5    SING  N  N  19  
SID  N5   HN5   SING  N  N  20  
SID  C6   C7    SING  N  N  21  
SID  C6   O6    SING  N  N  22  
SID  C6   H6    SING  N  N  23  
SID  C7   C8    SING  N  N  24  
SID  C7   O7    SING  N  N  25  
SID  C7   H7    SING  N  N  26  
SID  O7   HO7   SING  N  N  27  
SID  O8   C8    SING  N  N  28  
SID  C8   C9    SING  N  N  29  
SID  C8   H8    SING  N  N  30  
SID  O8   HO8   SING  N  N  31  
SID  S9   C9    SING  N  N  32  
SID  C9   H92   SING  N  N  33  
SID  C9   H91   SING  N  N  34  
SID  CA9  S9    SING  N  N  35  
SID  C11  C10   SING  N  N  36  
SID  C10  O10   DOUB  N  N  37  
SID  C11  H111  SING  N  N  38  
SID  C11  H113  SING  N  N  39  
SID  C11  H112  SING  N  N  40  
SID  CM9  CA9   SING  N  N  41  
SID  CA9  OA9   DOUB  N  N  42  
SID  CM2  HM2   SING  N  N  43  
SID  CM2  HM2A  SING  N  N  44  
SID  CM2  HM2B  SING  N  N  45  
SID  CM9  HM9   SING  N  N  46  
SID  CM9  HM9A  SING  N  N  47  
SID  CM9  HM9B  SING  N  N  48  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
SID  SMILES            ACDLabs               11.02  "O=C(SCC(O)C(O)C1OC(OC)(C(=O)O)CC(O)C1NC(=O)C)C"  
SID  SMILES_CANONICAL  CACTVS                3.352  "CO[C@@]1(C[C@H](O)[C@@H](NC(C)=O)[C@@H](O1)[C@H](O)[C@H](O)CSC(C)=O)C(O)=O"  
SID  SMILES            CACTVS                3.352  "CO[C]1(C[CH](O)[CH](NC(C)=O)[CH](O1)[CH](O)[CH](O)CSC(C)=O)C(O)=O"  
SID  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.0  "CC(=O)N[C@@H]1[C@H](C[C@@](O[C@H]1[C@@H]([C@@H](CSC(=O)C)O)O)(C(=O)O)OC)O"  
SID  SMILES            "OpenEye OEToolkits"  1.7.0  "CC(=O)NC1C(CC(OC1C(C(CSC(=O)C)O)O)(C(=O)O)OC)O"  
SID  InChI             InChI                 1.03   "InChI=1S/C14H23NO9S/c1-6(16)15-10-8(18)4-14(23-3,13(21)22)24-12(10)11(20)9(19)5-25-7(2)17/h8-12,18-20H,4-5H2,1-3H3,(H,15,16)(H,21,22)/t8-,9+,10+,11+,12+,14+/m0/s1"  
SID  InChIKey          InChI                 1.03   QHXQSHGOUBTADZ-KXEMTNKZSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
SID  "SYSTEMATIC NAME"  ACDLabs               11.02  "methyl 9-S-acetyl-5-(acetylamino)-3,5-dideoxy-9-thio-D-glycero-alpha-D-galacto-non-2-ulopyranosidonic acid"  
SID  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.6.1  
;(2R,4S,5R,6R)-5-acetamido-6-[(1R,2S)-3-ethanoylsulfanyl-1,2-dihydroxy-propyl]-4-hydroxy-2-methoxy-oxane-2-carboxylic
acid
;
  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
SID  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
SID  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
SID  "CARBOHYDRATE ANOMER"                  alpha     PDB  ?  
SID  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  ketose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
SID  "Create component"          2009-07-24  PDBJ  
SID  "Modify descriptor"         2011-06-04  RCSB  
SID  "Other modification"        2020-07-03  RCSB  
SID  "Modify name"               2020-07-17  RCSB  
SID  "Modify synonyms"           2020-07-17  RCSB  
SID  "Modify linking type"       2020-07-17  RCSB  
SID  "Modify atom id"            2020-07-17  RCSB  
SID  "Modify component atom id"  2020-07-17  RCSB  
SID  "Modify leaving atom flag"  2020-07-17  RCSB  
##
