data_MYD
#

_chem_comp.id                                   MYD
_chem_comp.name                                 
;{[5-(6-AMINO-PURIN-7-YL)-3,4-DIHYDROXY-TETRAHYDRO-FURAN-2-YLMETHOXY]-HYDROXY-PHOSPHORYLMETHYL}-PHOSPHONIC ACID
MONO-[2-(4-HYDROXY-6-METHOXY-7-METHYL-3-OXO-1,3-DIHYDRO-ISOBENZOFURAN-5-YL)-ETHYL] ESTER
;

_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C23 H29 N5 O13 P2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "C2-MYCOPHENOLIC ADENINE DINUCLEOTIDE"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2002-12-20
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       645.450
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    MYD
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1NF7
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
MYD  C53   C53   C  0  1  N  N  N   98.539   91.170  51.536   1.743   2.826   -7.614  C53   MYD   1  
MYD  O51   O51   O  0  1  N  N  N   98.056   89.810  51.693   1.835   1.480   -7.145  O51   MYD   2  
MYD  C46   C46   C  0  1  Y  N  N   96.834   89.346  51.130   0.693   0.853   -7.525  C46   MYD   3  
MYD  C47   C47   C  0  1  Y  N  N   96.882   88.293  50.188   0.633   0.207   -8.757  C47   MYD   4  
MYD  C52   C52   C  0  1  N  N  N   98.239   87.678  49.813   1.836   0.206   -9.665  C52   MYD   5  
MYD  C48   C48   C  0  1  Y  N  N   95.686   87.800  49.598  -0.509  -0.423   -9.145  C48   MYD   6  
MYD  C49   C49   C  0  1  N  N  N   95.469   86.672  48.557  -0.895  -1.196  -10.381  C49   MYD   7  
MYD  O50   O50   O  0  1  N  N  N   94.026   86.711  48.404  -2.272  -1.620  -10.185  O50   MYD   8  
MYD  C42   C42   C  0  1  N  N  N   93.455   87.713  49.232  -2.700  -1.178   -8.990  C42   MYD   9  
MYD  O43   O43   O  0  1  N  N  N   92.230   87.944  49.281  -3.811  -1.371   -8.536  O43   MYD  10  
MYD  C41   C41   C  0  1  Y  N  N   94.450   88.387  49.961  -1.635  -0.429   -8.312  C41   MYD  11  
MYD  C40   C40   C  0  1  Y  N  N   94.410   89.440  50.911  -1.577   0.220   -7.069  C40   MYD  12  
MYD  O31   O31   O  0  1  N  N  N   93.201   89.985  51.239  -2.659   0.224   -6.250  O31   MYD  13  
MYD  C39   C39   C  0  1  Y  N  N   95.606   89.942  51.513  -0.408   0.854   -6.682  C39   MYD  14  
MYD  C38   C38   C  0  1  N  N  N   95.561   91.102  52.533  -0.337   1.554   -5.350  C38   MYD  15  
MYD  C37   C37   C  0  1  N  N  N   95.394   92.441  51.782   0.143   0.571   -4.281  C37   MYD  16  
MYD  O36   O36   O  0  1  N  N  N   96.466   92.755  50.857   0.211   1.235   -3.018  O36   MYD  17  
MYD  P35   P35   P  0  1  N  N  S   96.225   94.080  49.958   0.721   0.147   -1.947  P35   MYD  18  
MYD  O45   O45   O  0  1  N  N  N   95.972   95.098  51.224   2.171  -0.397   -2.384  O45   MYD  19  
MYD  O30   O30   O  0  1  N  N  N   94.881   93.905  49.342  -0.235  -0.981   -1.896  O30   MYD  20  
MYD  C34   C34   C  0  1  N  N  N   97.119   94.462  49.045   0.834   0.922   -0.300  C34   MYD  21  
MYD  P33   P33   P  0  1  N  N  R   98.067   95.305  49.489   1.411  -0.309    0.912  P33   MYD  22  
MYD  O44   O44   O  0  1  N  N  N   99.328   95.596  48.415   2.862  -0.854    0.474  O44   MYD  23  
MYD  O29   O29   O  0  1  N  N  N   98.780   94.928  50.757   0.455  -1.438    0.962  O29   MYD  24  
MYD  O32   O32   O  0  1  N  N  N   97.600   96.909  49.741   1.511   0.374    2.366  O32   MYD  25  
MYD  C28   C28   C  0  1  N  N  N   97.280   97.630  48.544   1.966  -0.636    3.268  C28   MYD  26  
MYD  C27   C27   C  0  1  N  N  R   97.103   99.115  48.540   2.084  -0.048    4.675  C27   MYD  27  
MYD  O24   O24   O  0  1  N  N  N   98.283   99.798  49.131   0.794   0.397    5.127  O24   MYD  28  
MYD  C26   C26   C  0  1  N  N  S   96.841   99.697  47.063   2.567  -1.133    5.657  C26   MYD  29  
MYD  O25   O25   O  0  1  N  N  N   95.430   99.583  46.910   3.804  -0.753    6.263  O25   MYD  30  
MYD  C22   C22   C  0  1  N  N  R   97.152  101.170  47.479   1.441  -1.205    6.722  C22   MYD  31  
MYD  O21   O21   O  0  1  N  N  N   96.030  101.833  48.185   1.989  -1.340    8.035  O21   MYD  32  
MYD  C23   C23   C  0  1  N  N  R   98.460  101.037  48.358   0.745   0.168    6.552  C23   MYD  33  
MYD  N20   N20   N  0  1  Y  N  N   99.646  100.840  47.520  -0.642   0.108    7.017  N20   MYD  34  
MYD  C16   C16   C  0  1  Y  N  N  100.255   99.751  47.127  -1.721  -0.294    6.287  C16   MYD  35  
MYD  N15   N15   N  0  1  Y  N  N  101.451  100.068  46.557  -2.800  -0.223    7.011  N15   MYD  36  
MYD  C14   C14   C  0  1  Y  N  N  101.567  101.432  46.550  -2.483   0.229    8.248  C14   MYD  37  
MYD  C19   C19   C  0  1  Y  N  N  100.424  101.927  47.159  -1.095   0.442    8.269  C19   MYD  38  
MYD  N18   N18   N  0  1  Y  N  N  100.284  103.286  47.319  -0.527   0.898    9.381  N18   MYD  39  
MYD  C17   C17   C  0  1  Y  N  N  101.194  104.147  46.825  -1.251   1.137   10.454  C17   MYD  40  
MYD  N12   N12   N  0  1  Y  N  N  102.274  103.675  46.179  -2.558   0.947   10.484  N12   MYD  41  
MYD  C13   C13   C  0  1  Y  N  N  102.478  102.348  46.016  -3.213   0.499    9.418  C13   MYD  42  
MYD  N11   N11   N  0  1  N  N  N  103.510  101.923  45.298  -4.582   0.302    9.460  N11   MYD  43  
MYD  H531  1H53  H  0  0  N  N  N   99.496   91.533  51.977   2.644   3.372   -7.330  H531  MYD  44  
MYD  H532  2H53  H  0  0  N  N  N   98.574   91.385  50.442   1.645   2.827   -8.699  H532  MYD  45  
MYD  H533  3H53  H  0  0  N  N  N   97.730   91.852  51.889   0.872   3.307   -7.169  H533  MYD  46  
MYD  H521  1H52  H  0  0  N  N  N   98.276   86.847  49.070   2.456  -0.662   -9.444  H521  MYD  47  
MYD  H522  2H52  H  0  0  N  N  N   98.917   88.493  49.470   1.508   0.164  -10.703  H522  MYD  48  
MYD  H523  3H52  H  0  0  N  N  N   98.749   87.344  50.746   2.414   1.115   -9.503  H523  MYD  49  
MYD  H491  1H49  H  0  0  N  N  N   96.054   86.771  47.613  -0.823  -0.556  -11.261  H491  MYD  50  
MYD  H492  2H49  H  0  0  N  N  N   95.895   85.678  48.830  -0.248  -2.065  -10.497  H492  MYD  51  
MYD  H31   H31   H  0  1  N  N  N   93.174   90.690  51.875  -2.584  -0.557   -5.685  H31   MYD  52  
MYD  H381  1H38  H  0  0  N  N  N   94.773   90.952  53.307   0.360   2.389   -5.415  H381  MYD  53  
MYD  H382  2H38  H  0  0  N  N  N   96.448   91.104  53.207  -1.326   1.927   -5.082  H382  MYD  54  
MYD  H371  1H37  H  0  0  N  N  N   94.410   92.470  51.258  -0.554  -0.264   -4.216  H371  MYD  55  
MYD  H372  2H37  H  0  0  N  N  N   95.251   93.276  52.507   1.132   0.198   -4.549  H372  MYD  56  
MYD  H45   H45   H  0  1  N  N  N   95.830   95.875  50.696   2.763   0.367   -2.405  H45   MYD  57  
MYD  H341  1H34  H  0  0  N  N  N   97.590   93.568  48.573   1.538   1.753   -0.338  H341  MYD  58  
MYD  H342  2H34  H  0  0  N  N  N   96.600   94.899  48.160  -0.147   1.291   -0.004  H342  MYD  59  
MYD  H44   H44   H  0  1  N  N  N   99.998   96.191  48.728   3.453  -0.089    0.454  H44   MYD  60  
MYD  H281  1H28  H  0  0  N  N  N   98.049   97.376  47.777   1.255  -1.462    3.277  H281  MYD  61  
MYD  H282  2H28  H  0  0  N  N  N   96.359   97.176  48.108   2.942  -0.999    2.943  H282  MYD  62  
MYD  H27   H27   H  0  1  N  N  N   96.201   99.321  49.162   2.784   0.786    4.671  H27   MYD  63  
MYD  H26   H26   H  0  1  N  N  N   97.362   99.281  46.169   2.671  -2.090    5.147  H26   MYD  64  
MYD  H25   H25   H  0  1  N  N  N   95.275   99.926  46.037   4.022  -1.439    6.908  H25   MYD  65  
MYD  H22   H22   H  0  1  N  N  N   97.300  101.837  46.598   0.750  -2.020    6.505  H22   MYD  66  
MYD  H21   H21   H  0  1  N  N  N   96.219  102.728  48.438   2.406  -2.212    8.075  H21   MYD  67  
MYD  H23   H23   H  0  1  N  N  N   98.601  101.953  48.976   1.293   0.945    7.085  H23   MYD  68  
MYD  H16   H16   H  0  1  N  N  N   99.832   98.739  47.254  -1.685  -0.625    5.259  H16   MYD  69  
MYD  H17   H17   H  0  1  N  N  N  101.055  105.234  46.949  -0.759   1.503   11.342  H17   MYD  70  
MYD  H111  1H11  H  0  0  N  N  N  104.174  102.591  44.908  -5.075   0.493   10.274  H111  MYD  71  
MYD  H112  2H11  H  0  0  N  N  N  103.155  101.342  44.537  -5.049  -0.025    8.676  H112  MYD  72  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
MYD  C53  O51   SING  N  N   1  
MYD  C53  H531  SING  N  N   2  
MYD  C53  H532  SING  N  N   3  
MYD  C53  H533  SING  N  N   4  
MYD  O51  C46   SING  N  N   5  
MYD  C46  C47   DOUB  Y  N   6  
MYD  C46  C39   SING  Y  N   7  
MYD  C47  C52   SING  N  N   8  
MYD  C47  C48   SING  Y  N   9  
MYD  C52  H521  SING  N  N  10  
MYD  C52  H522  SING  N  N  11  
MYD  C52  H523  SING  N  N  12  
MYD  C48  C49   SING  N  N  13  
MYD  C48  C41   DOUB  Y  N  14  
MYD  C49  O50   SING  N  N  15  
MYD  C49  H491  SING  N  N  16  
MYD  C49  H492  SING  N  N  17  
MYD  O50  C42   SING  N  N  18  
MYD  C42  O43   DOUB  N  N  19  
MYD  C42  C41   SING  N  N  20  
MYD  C41  C40   SING  Y  N  21  
MYD  C40  O31   SING  N  N  22  
MYD  C40  C39   DOUB  Y  N  23  
MYD  O31  H31   SING  N  N  24  
MYD  C39  C38   SING  N  N  25  
MYD  C38  C37   SING  N  N  26  
MYD  C38  H381  SING  N  N  27  
MYD  C38  H382  SING  N  N  28  
MYD  C37  O36   SING  N  N  29  
MYD  C37  H371  SING  N  N  30  
MYD  C37  H372  SING  N  N  31  
MYD  O36  P35   SING  N  N  32  
MYD  P35  O45   SING  N  N  33  
MYD  P35  O30   DOUB  N  N  34  
MYD  P35  C34   SING  N  N  35  
MYD  O45  H45   SING  N  N  36  
MYD  C34  P33   SING  N  N  37  
MYD  C34  H341  SING  N  N  38  
MYD  C34  H342  SING  N  N  39  
MYD  P33  O44   SING  N  N  40  
MYD  P33  O29   DOUB  N  N  41  
MYD  P33  O32   SING  N  N  42  
MYD  O44  H44   SING  N  N  43  
MYD  O32  C28   SING  N  N  44  
MYD  C28  C27   SING  N  N  45  
MYD  C28  H281  SING  N  N  46  
MYD  C28  H282  SING  N  N  47  
MYD  C27  O24   SING  N  N  48  
MYD  C27  C26   SING  N  N  49  
MYD  C27  H27   SING  N  N  50  
MYD  O24  C23   SING  N  N  51  
MYD  C26  O25   SING  N  N  52  
MYD  C26  C22   SING  N  N  53  
MYD  C26  H26   SING  N  N  54  
MYD  O25  H25   SING  N  N  55  
MYD  C22  O21   SING  N  N  56  
MYD  C22  C23   SING  N  N  57  
MYD  C22  H22   SING  N  N  58  
MYD  O21  H21   SING  N  N  59  
MYD  C23  N20   SING  N  N  60  
MYD  C23  H23   SING  N  N  61  
MYD  N20  C16   SING  Y  N  62  
MYD  N20  C19   SING  Y  N  63  
MYD  C16  N15   DOUB  Y  N  64  
MYD  C16  H16   SING  N  N  65  
MYD  N15  C14   SING  Y  N  66  
MYD  C14  C19   DOUB  Y  N  67  
MYD  C14  C13   SING  Y  N  68  
MYD  C19  N18   SING  Y  N  69  
MYD  N18  C17   DOUB  Y  N  70  
MYD  C17  N12   SING  Y  N  71  
MYD  C17  H17   SING  N  N  72  
MYD  N12  C13   DOUB  Y  N  73  
MYD  C13  N11   SING  N  N  74  
MYD  N11  H111  SING  N  N  75  
MYD  N11  H112  SING  N  N  76  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
MYD  SMILES            ACDLabs               10.04  "O=C5OCc1c5c(O)c(c(OC)c1C)CCOP(=O)(O)CP(=O)(O)OCC4OC(n3cnc2c(ncnc23)N)C(O)C4O"  
MYD  SMILES_CANONICAL  CACTVS                3.341  "COc1c(C)c2COC(=O)c2c(O)c1CCO[P@](O)(=O)C[P@](O)(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3O)n4cnc5c(N)ncnc45"  
MYD  SMILES            CACTVS                3.341  "COc1c(C)c2COC(=O)c2c(O)c1CCO[P](O)(=O)C[P](O)(=O)OC[CH]3O[CH]([CH](O)[CH]3O)n4cnc5c(N)ncnc45"  
MYD  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "Cc1c2c(c(c(c1OC)CCO[P@](=O)(C[P@@](=O)(O)OC[C@@H]3[C@H]([C@H]([C@@H](O3)n4cnc5c4ncnc5N)O)O)O)O)C(=O)OC2"  
MYD  SMILES            "OpenEye OEToolkits"  1.5.0  "Cc1c2c(c(c(c1OC)CCOP(=O)(CP(=O)(O)OCC3C(C(C(O3)n4cnc5c4ncnc5N)O)O)O)O)C(=O)OC2"  
MYD  InChI             InChI                 1.03   "InChI=1S/C23H29N5O13P2/c1-10-12-5-38-23(32)14(12)16(29)11(19(10)37-2)3-4-39-42(33,34)9-43(35,36)40-6-13-17(30)18(31)22(41-13)28-8-27-15-20(24)25-7-26-21(15)28/h7-8,13,17-18,22,29-31H,3-6,9H2,1-2H3,(H,33,34)(H,35,36)(H2,24,25,26)/t13-,17-,18-,22-/m1/s1"  
MYD  InChIKey          InChI                 1.03   AMYUZLUBFKOUEX-JKWAKEATSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
MYD  "SYSTEMATIC NAME"  ACDLabs               10.04  "5'-O-[(R)-hydroxy({(S)-hydroxy[2-(4-hydroxy-6-methoxy-7-methyl-3-oxo-1,3-dihydro-2-benzofuran-5-yl)ethoxy]phosphoryl}methyl)phosphoryl]adenosine"  
MYD  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl]methyl-[2-(4-hydroxy-6-methoxy-7-methyl-3-oxo-1H-2-benzofuran-5-yl)ethoxy]phosphinic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
MYD  "Create component"   2002-12-20  RCSB  
MYD  "Modify descriptor"  2011-06-04  RCSB  
MYD  "Modify synonyms"    2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     MYD
_pdbx_chem_comp_synonyms.name        "C2-MYCOPHENOLIC ADENINE DINUCLEOTIDE"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
