data_F0D
# 
_chem_comp.id                                    F0D 
_chem_comp.name                                  "3-{[(14beta,16alpha,17alpha)-3-(2-bromoethyl)-17-hydroxyestra-1,3,5(10)-trien-16-yl]methyl}benzamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C28 H34 Br N O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2018-02-22 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        496.479 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     F0D 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6CGE 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
F0D C1  C1  C  0 1 Y N N N N N -25.861 3.708  -29.710 3.336   -1.853 -0.334 C1  F0D 1  
F0D C2  C2  C  0 1 Y N N N N N -26.478 2.731  -30.477 4.620   -1.467 -0.008 C2  F0D 2  
F0D C31 C3  C  0 1 N N N N N N -26.490 1.345  -33.741 6.985   0.761  -0.553 C31 F0D 3  
F0D C30 C4  C  0 1 N N N N N N -26.466 0.957  -32.240 6.269   0.275  0.709  C30 F0D 4  
F0D C3  C5  C  0 1 Y N N N N N -25.749 1.990  -31.405 4.869   -0.157 0.358  C3  F0D 5  
F0D C5  C6  C  0 1 Y N N N N N -24.382 2.193  -31.583 3.833   0.752  0.399  C5  F0D 6  
F0D C6  C7  C  0 1 Y N N N N N -23.712 3.152  -30.842 2.539   0.366  0.076  C6  F0D 7  
F0D C7  C8  C  0 1 N N N N N N -22.219 3.333  -31.061 1.455   1.408  0.167  C7  F0D 8  
F0D C8  C9  C  0 1 N N N N N N -21.613 4.525  -30.315 0.190   0.957  -0.563 C8  F0D 9  
F0D C9  C10 C  0 1 N N R N N N -22.236 4.740  -28.940 -0.143  -0.465 -0.110 C9  F0D 10 
F0D C11 C11 C  0 1 Y N N N N N -24.477 3.943  -29.843 2.294   -0.937 -0.304 C11 F0D 11 
F0D C10 C12 C  0 1 N N S N N N -23.759 4.986  -29.062 0.921   -1.406 -0.689 C10 F0D 12 
F0D C12 C13 C  0 1 N N N N N N -24.387 5.223  -27.686 0.680   -2.852 -0.281 C12 F0D 13 
F0D C13 C14 C  0 1 N N N N N N -23.726 6.465  -27.131 -0.737  -3.302 -0.687 C13 F0D 14 
F0D C14 C15 C  0 1 N N S N N N -22.244 6.289  -26.890 -1.723  -2.352 -0.041 C14 F0D 15 
F0D C20 C16 C  0 1 N N N N N N -22.016 5.222  -25.792 -1.482  -2.311 1.470  C20 F0D 16 
F0D C15 C17 C  0 1 N N S N N N -21.606 5.962  -28.240 -1.482  -0.928 -0.647 C15 F0D 17 
F0D C16 C18 C  0 1 N N N N N N -20.104 6.085  -27.925 -2.710  -0.163 -0.141 C16 F0D 18 
F0D C18 C19 C  0 1 N N S N N N -21.496 7.591  -26.564 -3.201  -2.601 -0.317 C18 F0D 19 
F0D O19 O1  O  0 1 N N N N N N -21.655 8.039  -25.215 -3.765  -3.420 0.710  O19 F0D 20 
F0D C17 C20 C  0 1 N N R N N N -20.043 7.326  -26.991 -3.862  -1.185 -0.338 C17 F0D 21 
F0D C21 C21 C  0 1 N N N N N N -19.054 7.222  -25.812 -4.867  -1.072 0.811  C21 F0D 22 
F0D C22 C22 C  0 1 Y N N N N N -17.631 7.438  -26.292 -5.557  0.266  0.745  C22 F0D 23 
F0D C23 C23 C  0 1 Y N N N N N -16.714 6.382  -26.224 -6.721  0.405  0.018  C23 F0D 24 
F0D C27 C24 C  0 1 Y N N N N N -17.211 8.678  -26.796 -5.024  1.351  1.417  C27 F0D 25 
F0D C26 C25 C  0 1 Y N N N N N -15.889 8.847  -27.224 -5.654  2.582  1.367  C26 F0D 26 
F0D C25 C26 C  0 1 Y N N N N N -14.983 7.773  -27.158 -6.819  2.734  0.644  C25 F0D 27 
F0D C24 C27 C  0 1 Y N N N N N -15.386 6.530  -26.646 -7.359  1.644  -0.041 C24 F0D 28 
F0D C28 C28 C  0 1 N N N N N N -14.401 5.378  -26.574 -8.608  1.800  -0.818 C28 F0D 29 
F0D O29 O2  O  0 1 N N N N N N -13.202 5.611  -26.646 -9.076  0.850  -1.413 O29 F0D 30 
F0D N30 N1  N  0 1 N N N N N N -14.802 4.107  -26.451 -9.227  2.996  -0.865 N30 F0D 31 
F0D H1  H1  H  0 1 N N N N N N -26.442 4.290  -29.010 3.141   -2.877 -0.619 H1  F0D 32 
F0D H2  H2  H  0 1 N N N N N N -27.534 2.543  -30.354 5.426   -2.185 -0.038 H2  F0D 33 
F0D H3  H3  H  0 1 N N N N N N -27.552 1.535  -33.957 7.027   -0.049 -1.281 H3  F0D 34 
F0D H4  H4  H  0 1 N N N N N N -25.931 2.291  -33.787 6.440   1.604  -0.978 H4  F0D 35 
F0D H6  H6  H  0 1 N N N N N N -27.501 0.864  -31.880 6.814   -0.567 1.135  H6  F0D 36 
F0D H7  H7  H  0 1 N N N N N N -25.951 -0.009 -32.130 6.227   1.085  1.438  H7  F0D 37 
F0D H8  H8  H  0 1 N N N N N N -23.841 1.598  -32.304 4.031   1.775  0.686  H8  F0D 38 
F0D H9  H9  H  0 1 N N N N N N -21.708 2.419  -30.723 1.217   1.585  1.216  H9  F0D 39 
F0D H10 H10 H  0 1 N N N N N N -22.043 3.475  -32.138 1.813   2.335  -0.279 H10 F0D 40 
F0D H11 H11 H  0 1 N N N N N N -20.535 4.349  -30.189 -0.635  1.624  -0.315 H11 F0D 41 
F0D H12 H12 H  0 1 N N N N N N -21.768 5.432  -30.917 0.363   0.969  -1.639 H12 F0D 42 
F0D H13 H13 H  0 1 N N N N N N -22.067 3.846  -28.322 -0.146  -0.513 0.979  H13 F0D 43 
F0D H14 H14 H  0 1 N N N N N N -23.871 5.929  -29.617 0.843   -1.359 -1.775 H14 F0D 44 
F0D H15 H15 H  0 1 N N N N N N -25.472 5.379  -27.783 1.414   -3.491 -0.771 H15 F0D 45 
F0D H16 H16 H  0 1 N N N N N N -24.198 4.363  -27.027 0.790   -2.943 0.800  H16 F0D 46 
F0D H17 H17 H  0 1 N N N N N N -23.869 7.288  -27.847 -0.841  -3.262 -1.771 H17 F0D 47 
F0D H18 H18 H  0 1 N N N N N N -24.208 6.722  -26.176 -0.917  -4.318 -0.334 H18 F0D 48 
F0D H19 H19 H  0 1 N N N N N N -22.508 5.541  -24.862 -0.439  -2.064 1.665  H19 F0D 49 
F0D H20 H20 H  0 1 N N N N N N -22.440 4.262  -26.120 -2.126  -1.555 1.920  H20 F0D 50 
F0D H21 H21 H  0 1 N N N N N N -20.937 5.104  -25.614 -1.712  -3.286 1.901  H21 F0D 51 
F0D H22 H22 H  0 1 N N N N N N -21.838 6.819  -28.889 -1.468  -0.950 -1.736 H22 F0D 52 
F0D H23 H23 H  0 1 N N N N N N -19.733 5.186  -27.412 -2.598  0.094  0.912  H23 F0D 53 
F0D H24 H24 H  0 1 N N N N N N -19.520 6.251  -28.842 -2.881  0.731  -0.741 H24 F0D 54 
F0D H25 H25 H  0 1 N N N N N N -21.892 8.367  -27.235 -3.329  -3.075 -1.290 H25 F0D 55 
F0D H26 H26 H  0 1 N N N N N N -22.577 8.178  -25.034 -4.705  -3.612 0.587  H26 F0D 56 
F0D H27 H27 H  0 1 N N N N N N -19.724 8.179  -27.608 -4.361  -1.008 -1.291 H27 F0D 57 
F0D H28 H28 H  0 1 N N N N N N -19.303 7.987  -25.062 -5.607  -1.867 0.726  H28 F0D 58 
F0D H29 H29 H  0 1 N N N N N N -19.135 6.223  -25.358 -4.342  -1.164 1.762  H29 F0D 59 
F0D H30 H30 H  0 1 N N N N N N -17.039 5.428  -25.836 -7.138  -0.444 -0.503 H30 F0D 60 
F0D H31 H31 H  0 1 N N N N N N -17.907 9.502  -26.854 -4.112  1.237  1.985  H31 F0D 61 
F0D H32 H32 H  0 1 N N N N N N -15.564 9.804  -27.606 -5.236  3.424  1.897  H32 F0D 62 
F0D H33 H33 H  0 1 N N N N N N -13.969 7.906  -27.504 -7.311  3.695  0.605  H33 F0D 63 
F0D H34 H34 H  0 1 N N N N N N -14.126 3.370  -26.420 -8.854  3.755  -0.390 H34 F0D 64 
F0D H35 H35 H  0 1 N N N N N N -15.777 3.894  -26.390 -10.046 3.099  -1.375 H35 F0D 65 
F0D BR1 BR1 BR 0 0 N N N N N N -26.070 0.674  -34.765 8.811   1.326  -0.094 BR1 F0D 66 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
F0D C31 C30 SING N N 1  
F0D C30 C3  SING N N 2  
F0D C5  C3  DOUB Y N 3  
F0D C5  C6  SING Y N 4  
F0D C3  C2  SING Y N 5  
F0D C7  C6  SING N N 6  
F0D C7  C8  SING N N 7  
F0D C6  C11 DOUB Y N 8  
F0D C2  C1  DOUB Y N 9  
F0D C8  C9  SING N N 10 
F0D C11 C1  SING Y N 11 
F0D C11 C10 SING N N 12 
F0D C10 C9  SING N N 13 
F0D C10 C12 SING N N 14 
F0D C9  C15 SING N N 15 
F0D C15 C16 SING N N 16 
F0D C15 C14 SING N N 17 
F0D C16 C17 SING N N 18 
F0D C12 C13 SING N N 19 
F0D C26 C25 DOUB Y N 20 
F0D C26 C27 SING Y N 21 
F0D C25 C24 SING Y N 22 
F0D C13 C14 SING N N 23 
F0D C17 C18 SING N N 24 
F0D C17 C21 SING N N 25 
F0D C14 C18 SING N N 26 
F0D C14 C20 SING N N 27 
F0D C27 C22 DOUB Y N 28 
F0D O29 C28 DOUB N N 29 
F0D C24 C28 SING N N 30 
F0D C24 C23 DOUB Y N 31 
F0D C28 N30 SING N N 32 
F0D C18 O19 SING N N 33 
F0D C22 C23 SING Y N 34 
F0D C22 C21 SING N N 35 
F0D C1  H1  SING N N 36 
F0D C2  H2  SING N N 37 
F0D C31 H3  SING N N 38 
F0D C31 H4  SING N N 39 
F0D C30 H6  SING N N 40 
F0D C30 H7  SING N N 41 
F0D C5  H8  SING N N 42 
F0D C7  H9  SING N N 43 
F0D C7  H10 SING N N 44 
F0D C8  H11 SING N N 45 
F0D C8  H12 SING N N 46 
F0D C9  H13 SING N N 47 
F0D C10 H14 SING N N 48 
F0D C12 H15 SING N N 49 
F0D C12 H16 SING N N 50 
F0D C13 H17 SING N N 51 
F0D C13 H18 SING N N 52 
F0D C20 H19 SING N N 53 
F0D C20 H20 SING N N 54 
F0D C20 H21 SING N N 55 
F0D C15 H22 SING N N 56 
F0D C16 H23 SING N N 57 
F0D C16 H24 SING N N 58 
F0D C18 H25 SING N N 59 
F0D O19 H26 SING N N 60 
F0D C17 H27 SING N N 61 
F0D C21 H28 SING N N 62 
F0D C21 H29 SING N N 63 
F0D C23 H30 SING N N 64 
F0D C27 H31 SING N N 65 
F0D C26 H32 SING N N 66 
F0D C25 H33 SING N N 67 
F0D N30 H34 SING N N 68 
F0D N30 H35 SING N N 69 
F0D C31 BR1 SING N N 70 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
F0D SMILES           ACDLabs              12.01 "c1cc(CCBr)cc2c1C3C(CC2)C4C(CC3)(C(O)C(C4)Cc5cc(ccc5)C(N)=O)C"                                                                                                                                                       
F0D InChI            InChI                1.03  "InChI=1S/C28H34BrNO2/c1-28-11-9-23-22-7-5-17(10-12-29)13-19(22)6-8-24(23)25(28)16-21(26(28)31)15-18-3-2-4-20(14-18)27(30)32/h2-5,7,13-14,21,23-26,31H,6,8-12,15-16H2,1H3,(H2,30,32)/t21-,23+,24+,25-,26-,28-/m0/s1" 
F0D InChIKey         InChI                1.03  LSFSILMVQQMGRP-OPRSCSRJSA-N                                                                                                                                                                                          
F0D SMILES_CANONICAL CACTVS               3.385 "C[C@]12CC[C@H]3[C@@H](CCc4cc(CCBr)ccc34)[C@@H]1C[C@H](Cc5cccc(c5)C(N)=O)[C@@H]2O"                                                                                                                                   
F0D SMILES           CACTVS               3.385 "C[C]12CC[CH]3[CH](CCc4cc(CCBr)ccc34)[CH]1C[CH](Cc5cccc(c5)C(N)=O)[CH]2O"                                                                                                                                            
F0D SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C[C@]12CC[C@@H]3c4ccc(cc4CC[C@H]3[C@@H]1C[C@@H]([C@@H]2O)Cc5cccc(c5)C(=O)N)CCBr"                                                                                                                                    
F0D SMILES           "OpenEye OEToolkits" 2.0.6 "CC12CCC3c4ccc(cc4CCC3C1CC(C2O)Cc5cccc(c5)C(=O)N)CCBr"                                                                                                                                                               
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
F0D "SYSTEMATIC NAME" ACDLabs              12.01 "3-{[(14beta,16alpha,17alpha)-3-(2-bromoethyl)-17-hydroxyestra-1,3,5(10)-trien-16-yl]methyl}benzamide"                                                                    
F0D "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "3-[[(8~{R},9~{S},13~{S},14~{S},16~{R},17~{S})-3-(2-bromoethyl)-13-methyl-17-oxidanyl-6,7,8,9,11,12,14,15,16,17-decahydrocyclopenta[a]phenanthren-16-yl]methyl]benzamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
F0D "Create component" 2018-02-22 RCSB 
F0D "Initial release"  2019-01-16 RCSB 
F0D "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            F0D 
_pdbx_chem_comp_pcm.modified_residue_id                HIS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           Lipid/lipid-like 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C31 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   NE2 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
