data_6UD
#

_chem_comp.id                                   6UD
_chem_comp.name                                 "5-acetamido-2,6-anhydro-3,5,9-trideoxy-9-triazan-1-yl-D-glycero-D-galacto-non-2-enonic acid"
_chem_comp.type                                 D-saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C11 H20 N4 O7"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        
;(2~{R},3~{R},4~{S})-3-acetamido-2-[(1~{R},2~{R})-3-(2-azanylhydrazinyl)-1,2-bis(oxidanyl)propyl]-4-oxidanyl-3,4-dihydro
 -2~{H}-pyran-6-carboxylic acid
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2016-06-27
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       320.299
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    6UD
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5KKY
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     6UD
_pdbx_chem_comp_synonyms.name        
;(2~{R},3~{R},4~{S})-3-acetamido-2-[(1~{R},2~{R})-3-(2-azanylhydrazinyl)-1,2-bis(oxidanyl)propyl]-4-oxidanyl-3,4-dihydro
 -2~{H}-pyran-6-carboxylic acid
;

_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
6UD  C1    C1    C  0  1  N  N  N  -25.136  4.245  -63.088   1.613   3.460  -0.155  C1    6UD   1  
6UD  C2    C2    C  0  1  N  N  N  -24.090  4.966  -62.491   1.621   2.001   0.054  C2    6UD   2  
6UD  C3    C3    C  0  1  N  N  N  -23.337  5.911  -63.194   2.761   1.417   0.391  C3    6UD   3  
6UD  C4    C4    C  0  1  N  N  S  -22.345  6.640  -62.512   2.864  -0.065   0.634  C4    6UD   4  
6UD  C5    C5    C  0  1  N  N  R  -21.813  5.883  -61.310   1.649  -0.768   0.020  C5    6UD   5  
6UD  C6    C6    C  0  1  N  N  R  -23.007  5.560  -60.452   0.387  -0.001   0.440  C6    6UD   6  
6UD  C7    C7    C  0  1  N  N  R  -22.578  4.872  -59.158  -0.854  -0.714  -0.101  C7    6UD   7  
6UD  C8    C8    C  0  1  N  N  R  -23.806  4.312  -58.410  -2.098   0.119   0.213  C8    6UD   8  
6UD  C9    C9    C  0  1  N  N  N  -23.373  3.466  -57.196  -3.339  -0.594  -0.328  C9    6UD   9  
6UD  C10   C10   C  0  1  N  N  N  -19.762  6.328  -59.988   2.280  -3.118  -0.099  C10   6UD  10  
6UD  C11   C11   C  0  1  N  N  N  -18.889  7.420  -59.351   2.204  -4.536   0.407  C11   6UD  11  
6UD  N5    N5    N  0  1  N  N  N  -20.876  6.774  -60.602   1.575  -2.146   0.512  N5    6UD  12  
6UD  O1A   O1A   O  0  1  N  N  N  -25.816  3.429  -62.417   2.639   4.098  -0.022  O1A   6UD  13  
6UD  O1B   O1B   O  0  1  N  N  N  -25.417  4.432  -64.289   0.470   4.085  -0.499  O1B   6UD  14  
6UD  O4    O4    O  0  1  N  N  N  -21.264  7.022  -63.352   4.059  -0.564   0.030  O4    6UD  15  
6UD  O6    O6    O  0  1  N  N  N  -23.855  4.670  -61.174   0.460   1.320  -0.103  O6    6UD  16  
6UD  O7    O7    O  0  1  N  N  N  -21.663  3.817  -59.507  -0.732  -0.876  -1.515  O7    6UD  17  
6UD  O8    O8    O  0  1  N  N  N  -24.653  5.382  -57.981  -2.219   0.281   1.627  O8    6UD  18  
6UD  O10   O10   O  0  1  N  N  N  -19.428  5.140  -59.934   2.976  -2.852  -1.056  O10   6UD  19  
6UD  N1    N1    N  0  1  N  N  N  -24.518  2.726  -56.628  -4.518   0.260  -0.134  N1    6UD  20  
6UD  N2    N2    N  0  1  N  N  N  -24.569  1.518  -57.070  -5.719  -0.387  -0.637  N2    6UD  21  
6UD  N3    N3    N  0  1  N  N  N  -25.736  1.159  -57.389  -6.741  -0.462   0.394  N3    6UD  22  
6UD  H3    H3    H  0  1  N  N  N  -23.514  6.079  -64.246   3.648   2.025   0.495  H3    6UD  23  
6UD  H2    H2    H  0  1  N  N  N  -22.808  7.559  -62.124   2.892  -0.256   1.706  H2    6UD  24  
6UD  H5    H5    H  0  1  N  N  N  -21.310  4.960  -61.632   1.735  -0.770  -1.066  H5    6UD  25  
6UD  H6    H6    H  0  1  N  N  N  -23.542  6.489  -60.206   0.335   0.054   1.527  H6    6UD  26  
6UD  H7    H7    H  0  1  N  N  N  -22.077  5.608  -58.512  -0.944  -1.693   0.370  H7    6UD  27  
6UD  H8    H8    H  0  1  N  N  N  -24.359  3.659  -59.102  -2.008   1.098  -0.259  H8    6UD  28  
6UD  H91   H91   H  0  1  N  N  N  -22.603  2.748  -57.515  -3.208  -0.797  -1.391  H91   6UD  29  
6UD  H92   H92   H  0  1  N  N  N  -22.957  4.131  -56.425  -3.479  -1.534   0.207  H92   6UD  30  
6UD  H9    H9    H  0  1  N  N  N  -18.003  6.959  -58.890   2.980  -4.696   1.156  H9    6UD  31  
6UD  H10   H10   H  0  1  N  N  N  -18.570  8.133  -60.126   1.226  -4.710   0.854  H10   6UD  32  
6UD  H11   H11   H  0  1  N  N  N  -19.469  7.950  -58.581   2.353  -5.226  -0.424  H11   6UD  33  
6UD  HN5   HN5   H  0  1  N  N  N  -21.076  7.753  -60.576   1.018  -2.359   1.278  HN5   6UD  34  
6UD  HO4   HO4   H  0  1  N  N  N  -20.625  7.509  -62.845   4.870  -0.162   0.370  HO4   6UD  35  
6UD  HO7   HO7   H  0  1  N  N  N  -20.806  4.187  -59.686  -0.648  -0.043  -2.000  HO7   6UD  36  
6UD  HO8   HO8   H  0  1  N  N  N  -25.405  5.027  -57.522  -2.304  -0.551   2.112  HO8   6UD  37  
6UD  H17   H17   H  0  1  N  N  N  -24.428  2.704  -55.632  -4.624   0.515   0.836  H17   6UD  38  
6UD  H18   H18   H  0  1  N  N  N  -24.230  0.903  -56.358  -5.509  -1.303  -1.005  H18   6UD  39  
6UD  H19   H19   H  0  1  N  N  N  -25.716  0.217  -57.724  -6.951   0.454   0.762  H19   6UD  40  
6UD  H20   H20   H  0  1  N  N  N  -26.332  1.215  -56.588  -7.575  -0.911   0.045  H20   6UD  41  
6UD  HO1B  HO1B  H  0  0  N  N  N  -26.158  3.888  -64.530   0.515   5.043  -0.625  HO1B  6UD  42  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
6UD  O1B  C1    SING  N  N   1  
6UD  O4   C4    SING  N  N   2  
6UD  C3   C4    SING  N  N   3  
6UD  C3   C2    DOUB  N  N   4  
6UD  C1   C2    SING  N  N   5  
6UD  C1   O1A   DOUB  N  N   6  
6UD  C4   C5    SING  N  N   7  
6UD  C2   O6    SING  N  N   8  
6UD  C5   N5    SING  N  N   9  
6UD  C5   C6    SING  N  N  10  
6UD  O6   C6    SING  N  N  11  
6UD  N5   C10   SING  N  N  12  
6UD  C6   C7    SING  N  N  13  
6UD  C10  O10   DOUB  N  N  14  
6UD  C10  C11   SING  N  N  15  
6UD  O7   C7    SING  N  N  16  
6UD  C7   C8    SING  N  N  17  
6UD  C8   O8    SING  N  N  18  
6UD  C8   C9    SING  N  N  19  
6UD  N3   N2    SING  N  N  20  
6UD  C9   N1    SING  N  N  21  
6UD  N2   N1    SING  N  N  22  
6UD  C3   H3    SING  N  N  23  
6UD  C4   H2    SING  N  N  24  
6UD  C5   H5    SING  N  N  25  
6UD  C6   H6    SING  N  N  26  
6UD  C7   H7    SING  N  N  27  
6UD  C8   H8    SING  N  N  28  
6UD  C9   H91   SING  N  N  29  
6UD  C9   H92   SING  N  N  30  
6UD  C11  H9    SING  N  N  31  
6UD  C11  H10   SING  N  N  32  
6UD  C11  H11   SING  N  N  33  
6UD  N5   HN5   SING  N  N  34  
6UD  O4   HO4   SING  N  N  35  
6UD  O7   HO7   SING  N  N  36  
6UD  O8   HO8   SING  N  N  37  
6UD  N1   H17   SING  N  N  38  
6UD  N2   H18   SING  N  N  39  
6UD  N3   H19   SING  N  N  40  
6UD  N3   H20   SING  N  N  41  
6UD  O1B  HO1B  SING  N  N  42  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
6UD  SMILES            ACDLabs               12.01  "C(C=1OC(C(C(C=1)O)NC(=O)C)C(C(O)CNNN)O)(=O)O"  
6UD  InChI             InChI                 1.03   "InChI=1S/C11H20N4O7/c1-4(16)14-8-5(17)2-7(11(20)21)22-10(8)9(19)6(18)3-13-15-12/h2,5-6,8-10,13,15,17-19H,3,12H2,1H3,(H,14,16)(H,20,21)/t5-,6+,8+,9+,10+/m0/s1"  
6UD  InChIKey          InChI                 1.03   FQISBZMFUOAQIB-UFGQHTETSA-N  
6UD  SMILES_CANONICAL  CACTVS                3.385  "CC(=O)N[C@@H]1[C@@H](O)C=C(O[C@H]1[C@H](O)[C@H](O)CNNN)C(O)=O"  
6UD  SMILES            CACTVS                3.385  "CC(=O)N[CH]1[CH](O)C=C(O[CH]1[CH](O)[CH](O)CNNN)C(O)=O"  
6UD  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CC(=O)N[C@@H]1[C@H](C=C(O[C@H]1[C@@H]([C@@H](CNNN)O)O)C(=O)O)O"  
6UD  SMILES            "OpenEye OEToolkits"  2.0.7  "CC(=O)NC1C(C=C(OC1C(C(CNNN)O)O)C(=O)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
6UD  "SYSTEMATIC NAME"  ACDLabs               12.01  "5-(acetylamino)-2,6-anhydro-3,5,9-trideoxy-9-triazan-1-yl-D-glycero-D-galacto-non-2-enonic acid"  
6UD  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  
;(2~{R},3~{R},4~{S})-3-acetamido-2-[(1~{R},2~{R})-3-(2-azanylhydrazinyl)-1,2-bis(oxidanyl)propyl]-4-oxidanyl-3,4-dihydro
-2~{H}-pyran-6-carboxylic acid
;
  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
6UD  "CARBOHYDRATE ISOMER"                  D             PDB  ?  
6UD  "CARBOHYDRATE RING"                    dihydropyran  PDB  ?  
6UD  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  ketose        PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
6UD  "Create component"    2016-06-27  RCSB  
6UD  "Initial release"     2017-06-28  RCSB  
6UD  "Other modification"  2020-04-11  RCSB  
6UD  "Other modification"  2020-07-03  RCSB  
6UD  "Modify name"         2020-07-17  RCSB  
6UD  "Modify synonyms"     2020-07-17  RCSB  
##
