data_ZDC
# 
_chem_comp.id                                    ZDC 
_chem_comp.name                                  "3,7-anhydro-2,8-dideoxy-L-glycero-D-gluco-octonic acid" 
_chem_comp.type                                  D-saccharide 
_chem_comp.pdbx_type                             ATOMS 
_chem_comp.formula                               "C8 H14 O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2012-12-17 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        206.193 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     ZDC 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3DCQ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
ZDC C1   C1   C 0 1 N N S N N N 13.263 47.159 9.319  -1.065 1.087  0.817  C1   ZDC 1  
ZDC C1M  C1M  C 0 1 N N N N N N 13.959 47.845 10.483 -1.132 2.005  -0.405 C1M  ZDC 2  
ZDC C2   C2   C 0 1 N N S N N N 14.167 47.088 8.096  -2.141 0.003  0.701  C2   ZDC 3  
ZDC C3   C3   C 0 1 N N R N N N 13.517 46.301 6.993  -1.862 -0.852 -0.539 C3   ZDC 4  
ZDC C4   C4   C 0 1 N N S N N N 13.092 44.916 7.506  -0.453 -1.441 -0.433 C4   ZDC 5  
ZDC C5   C5   C 0 1 N N S N N N 12.166 45.109 8.721  0.558  -0.303 -0.274 C5   ZDC 6  
ZDC C6   C6   C 0 1 N N N N N N 10.831 45.770 8.324  1.962  -0.886 -0.107 C6   ZDC 7  
ZDC C7   C7   C 0 1 N N N N N N 10.238 46.093 9.693  2.971  0.233  -0.074 C7   ZDC 8  
ZDC O2   O2   O 0 1 N N N N N N 15.393 46.478 8.447  -3.425 0.617  0.581  O2   ZDC 9  
ZDC O3   O3   O 0 1 N N N N N N 14.443 46.183 5.923  -1.956 -0.039 -1.711 O3   ZDC 10 
ZDC O4   O4   O 0 1 N N N N N N 12.411 44.212 6.483  -0.381 -2.307 0.702  O4   ZDC 11 
ZDC O5   O5   O 0 1 N N N N N N 12.899 45.822 9.741  0.224  0.472  0.880  O5   ZDC 12 
ZDC O7A  O7A  O 0 1 N N N N N N 9.927  45.192 10.470 2.604  1.380  -0.173 O7A  ZDC 13 
ZDC O7B  O7B  O 0 1 N Y N N N N 10.016 47.354 10.010 4.277  -0.044 0.066  O7B  ZDC 14 
ZDC H1   H1   H 0 1 N N N N N N 12.358 47.728 9.060  -1.233 1.671  1.721  H1   ZDC 15 
ZDC H1M1 H1M1 H 0 0 N N N N N N 14.247 48.865 10.189 -0.805 1.458  -1.289 H1M1 ZDC 16 
ZDC H1M2 H1M2 H 0 0 N N N N N N 13.275 47.891 11.343 -2.158 2.345  -0.548 H1M2 ZDC 17 
ZDC H1M3 H1M3 H 0 0 N N N N N N 14.859 47.275 10.759 -0.482 2.866  -0.249 H1M3 ZDC 18 
ZDC H2   H2   H 0 1 N N N N N N 14.348 48.112 7.738  -2.120 -0.627 1.590  H2   ZDC 19 
ZDC H2O  H2O  H 0 1 N N N N N N 15.956 46.435 7.683  -3.665 1.178  1.332  H2O  ZDC 20 
ZDC H3   H3   H 0 1 N N N N N N 12.618 46.838 6.655  -2.592 -1.659 -0.596 H3   ZDC 21 
ZDC H3O  H3O  H 0 1 N N N N N N 14.048 45.687 5.215  -2.822 0.372  -1.836 H3O  ZDC 22 
ZDC H4   H4   H 0 1 N N N N N N 13.988 44.364 7.825  -0.225 -2.007 -1.337 H4   ZDC 23 
ZDC H4O  H4O  H 0 1 N N N N N N 12.151 43.357 6.805  -0.999 -3.050 0.669  H4O  ZDC 24 
ZDC H5   H5   H 0 1 N N N N N N 11.927 44.107 9.107  0.531  0.333  -1.158 H5   ZDC 25 
ZDC H61  H61  H 0 1 N N N N N N 10.994 46.682 7.731  2.014  -1.450 0.824  H61  ZDC 26 
ZDC H62  H62  H 0 1 N N N N N N 10.190 45.076 7.761  2.182  -1.548 -0.945 H62  ZDC 27 
ZDC H7OB H7OB H 0 0 N N N N N N 9.612  47.399 10.868 4.886  0.707  0.082  H7OB ZDC 28 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
ZDC C1  C1M  SING N N 1  
ZDC C1M H1M1 SING N N 2  
ZDC C1M H1M2 SING N N 3  
ZDC C1M H1M3 SING N N 4  
ZDC C1  H1   SING N N 5  
ZDC C1  O5   SING N N 6  
ZDC C1  C2   SING N N 7  
ZDC C2  H2   SING N N 8  
ZDC C2  O2   SING N N 9  
ZDC O2  H2O  SING N N 10 
ZDC C2  C3   SING N N 11 
ZDC C3  H3   SING N N 12 
ZDC C3  O3   SING N N 13 
ZDC O3  H3O  SING N N 14 
ZDC C3  C4   SING N N 15 
ZDC C4  H4   SING N N 16 
ZDC C4  O4   SING N N 17 
ZDC O4  H4O  SING N N 18 
ZDC C4  C5   SING N N 19 
ZDC C5  H5   SING N N 20 
ZDC C5  O5   SING N N 21 
ZDC C5  C6   SING N N 22 
ZDC C6  H61  SING N N 23 
ZDC C6  H62  SING N N 24 
ZDC C6  C7   SING N N 25 
ZDC C7  O7A  DOUB N N 26 
ZDC C7  O7B  SING N N 27 
ZDC O7B H7OB SING N N 28 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
ZDC SMILES           ACDLabs              12.01 "O=C(O)CC1OC(C(O)C(O)C1O)C"                                                                                   
ZDC InChI            InChI                1.03  "InChI=1S/C8H14O6/c1-3-6(11)8(13)7(12)4(14-3)2-5(9)10/h3-4,6-8,11-13H,2H2,1H3,(H,9,10)/t3-,4-,6+,7+,8+/m0/s1" 
ZDC InChIKey         InChI                1.03  YTZUDUWVQZSKNN-OASCRQMUSA-N                                                                                   
ZDC SMILES_CANONICAL CACTVS               3.370 "C[C@@H]1O[C@@H](CC(O)=O)[C@@H](O)[C@H](O)[C@@H]1O"                                                           
ZDC SMILES           CACTVS               3.370 "C[CH]1O[CH](CC(O)=O)[CH](O)[CH](O)[CH]1O"                                                                    
ZDC SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C[C@H]1[C@H]([C@H]([C@@H]([C@@H](O1)CC(=O)O)O)O)O"                                                           
ZDC SMILES           "OpenEye OEToolkits" 1.7.6 "CC1C(C(C(C(O1)CC(=O)O)O)O)O"                                                                                 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
ZDC "SYSTEMATIC NAME" ACDLabs              12.01 "3,7-anhydro-2,8-dideoxy-L-glycero-D-gluco-octonic acid"                   
ZDC "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "2-[(2S,3S,4R,5S,6S)-6-methyl-3,4,5-tris(oxidanyl)oxan-2-yl]ethanoic acid" 
# 
loop_
_pdbx_chem_comp_feature.comp_id 
_pdbx_chem_comp_feature.type 
_pdbx_chem_comp_feature.value 
_pdbx_chem_comp_feature.source 
_pdbx_chem_comp_feature.support 
ZDC "CARBOHYDRATE ISOMER" D        PDB ? 
ZDC "CARBOHYDRATE RING"   pyranose PDB ? 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
ZDC "Create component"    2012-12-17 RCSB 
ZDC "Modify atom id"      2013-01-02 RCSB 
ZDC "Initial release"     2016-02-10 RCSB 
ZDC "Other modification"  2020-07-03 RCSB 
ZDC "Modify linking type" 2020-07-17 RCSB 
ZDC "Modify PCM"          2024-09-27 PDBE 
# 
loop_
_pdbx_chem_comp_pcm.pcm_id 
_pdbx_chem_comp_pcm.comp_id 
_pdbx_chem_comp_pcm.modified_residue_id 
_pdbx_chem_comp_pcm.type 
_pdbx_chem_comp_pcm.category 
_pdbx_chem_comp_pcm.position 
_pdbx_chem_comp_pcm.polypeptide_position 
_pdbx_chem_comp_pcm.comp_id_linking_atom 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession 
1 ZDC ALA None Carbohydrate "Amino-acid backbone"   N-terminal     C7 N  ? ? 
2 ZDC CYS None Carbohydrate "Amino-acid backbone"   N-terminal     C7 N  ? ? 
3 ZDC DCY None Carbohydrate "Amino-acid backbone"   N-terminal     C7 N  ? ? 
4 ZDC DLE None Carbohydrate "Amino-acid backbone"   N-terminal     C7 N  ? ? 
5 ZDC DLY None Carbohydrate "Amino-acid backbone"   N-terminal     C7 N  ? ? 
6 ZDC DTY None Carbohydrate "Amino-acid backbone"   N-terminal     C7 N  ? ? 
7 ZDC LYS None Carbohydrate "Amino-acid backbone"   N-terminal     C7 N  ? ? 
8 ZDC DPP None Carbohydrate "Amino-acid side chain" "Any position" C7 NG ? ? 
9 ZDC LYS None Carbohydrate "Amino-acid side chain" "Any position" C7 NZ ? ? 
# 
