data_XKC
# 
_chem_comp.id                                    XKC 
_chem_comp.name                                  "(2R)-2-hydroxy-2-[2-(2-methoxy-5-methylpyridin-3-yl)ethyl]butanedioic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C13 H17 N O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-11-03 
_chem_comp.pdbx_modified_date                    2024-12-20 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        283.277 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     XKC 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8UVB 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
XKC C10 C1  C 0 1 Y N N N N N 111.935 117.417 110.456 4.602  -0.138 0.483  C10 XKC 1  
XKC C13 C2  C 0 1 Y N N N N N 111.840 118.744 108.506 2.572  0.882  0.085  C13 XKC 2  
XKC C15 C3  C 0 1 N N N N N N 111.029 124.314 108.333 -2.716 -0.400 1.227  C15 XKC 3  
XKC C02 C4  C 0 1 N N N N N N 110.240 117.504 112.370 4.993  -2.584 0.101  C02 XKC 4  
XKC C04 C5  C 0 1 N N N N N N 113.810 118.952 107.091 2.454  3.212  0.536  C04 XKC 5  
XKC C05 C6  C 0 1 N N N N N N 109.932 120.483 108.115 0.571  -0.372 -0.776 C05 XKC 6  
XKC C06 C7  C 0 1 N N N N N N 110.059 121.933 108.677 -0.340 -0.421 0.453  C06 XKC 7  
XKC C07 C8  C 0 1 N N R N N N 111.301 122.790 108.161 -1.801 -0.477 0.003  C07 XKC 8  
XKC C08 C9  C 0 1 N N N N N N 112.588 122.391 108.991 -2.090 0.685  -0.913 C08 XKC 9  
XKC C11 C10 C 0 1 Y N N N N N 110.136 118.971 110.214 2.790  -1.460 -0.340 C11 XKC 10 
XKC C12 C11 C 0 1 Y N N N N N 110.767 117.969 111.009 4.109  -1.364 0.081  C12 XKC 11 
XKC C14 C12 C 0 1 Y N N N N N 110.628 119.389 108.956 2.010  -0.317 -0.332 C14 XKC 12 
XKC C16 C13 C 0 1 N N N N N N 109.643 124.782 107.747 -4.155 -0.455 0.784  C16 XKC 13 
XKC N01 N1  N 0 1 Y N N N N N 112.459 117.781 109.246 3.835  0.935  0.475  N01 XKC 14 
XKC O03 O1  O 0 1 N N N N N N 112.396 119.098 107.279 1.818  2.010  0.097  O03 XKC 15 
XKC O09 O2  O 0 1 N N N N N N 111.457 122.499 106.797 -2.039 -1.702 -0.693 O09 XKC 16 
XKC O17 O3  O 0 1 N N N N N N 109.021 125.731 108.323 -5.140 -0.403 1.694  O17 XKC 17 
XKC O18 O4  O 0 1 N N N N N N 109.159 124.227 106.721 -4.422 -0.546 -0.391 O18 XKC 18 
XKC O19 O5  O 0 1 N N N N N N 113.685 122.330 108.347 -2.461 0.484  -2.045 O19 XKC 19 
XKC O20 O6  O 0 1 N N N N N N 112.486 122.147 110.224 -1.934 1.943  -0.470 O20 XKC 20 
XKC H1  H1  H 0 1 N N N N N N 112.452 116.657 111.023 5.628  -0.058 0.812  H1  XKC 21 
XKC H2  H2  H 0 1 N N N N N N 111.828 124.869 107.820 -2.507 -1.240 1.890  H2  XKC 22 
XKC H3  H3  H 0 1 N N N N N N 111.049 124.551 109.407 -2.534 0.535  1.758  H3  XKC 23 
XKC H4  H4  H 0 1 N N N N N N 109.546 116.662 112.227 4.912  -3.076 1.071  H4  XKC 24 
XKC H5  H5  H 0 1 N N N N N N 111.083 117.181 112.999 4.679  -3.273 -0.683 H5  XKC 25 
XKC H6  H6  H 0 1 N N N N N N 109.713 118.334 112.862 6.028  -2.286 -0.070 H6  XKC 26 
XKC H7  H7  H 0 1 N N N N N N 114.080 119.274 106.075 1.742  4.036  0.497  H7  XKC 27 
XKC H8  H8  H 0 1 N N N N N N 114.343 119.572 107.826 2.806  3.083  1.560  H8  XKC 28 
XKC H9  H9  H 0 1 N N N N N N 114.091 117.897 107.228 3.301  3.433  -0.114 H9  XKC 29 
XKC H10 H10 H 0 1 N N N N N N 108.862 120.235 108.052 0.411  -1.263 -1.382 H10 XKC 30 
XKC H11 H11 H 0 1 N N N N N N 110.372 120.469 107.107 0.338  0.515  -1.365 H11 XKC 31 
XKC H12 H12 H 0 1 N N N N N N 109.142 122.477 108.407 -0.107 -1.308 1.043  H12 XKC 32 
XKC H13 H13 H 0 1 N N N N N N 110.134 121.862 109.772 -0.181 0.471  1.059  H13 XKC 33 
XKC H14 H14 H 0 1 N N N N N N 109.237 119.434 110.592 2.380  -2.407 -0.659 H14 XKC 34 
XKC H15 H15 H 0 1 N N N N N N 112.364 122.277 106.622 -1.873 -2.494 -0.163 H15 XKC 35 
XKC H16 H16 H 0 1 N N N N N N 108.209 125.905 107.861 -6.047 -0.441 1.362  H16 XKC 36 
XKC H17 H17 H 0 1 N N N N N N 113.339 121.919 110.574 -2.131 2.655  -1.094 H17 XKC 37 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
XKC O18 C16 DOUB N N 1  
XKC O09 C07 SING N N 2  
XKC C04 O03 SING N N 3  
XKC O03 C13 SING N N 4  
XKC C16 O17 SING N N 5  
XKC C16 C15 SING N N 6  
XKC C05 C06 SING N N 7  
XKC C05 C14 SING N N 8  
XKC C07 C15 SING N N 9  
XKC C07 C06 SING N N 10 
XKC C07 C08 SING N N 11 
XKC O19 C08 DOUB N N 12 
XKC C13 C14 DOUB Y N 13 
XKC C13 N01 SING Y N 14 
XKC C14 C11 SING Y N 15 
XKC C08 O20 SING N N 16 
XKC N01 C10 DOUB Y N 17 
XKC C11 C12 DOUB Y N 18 
XKC C10 C12 SING Y N 19 
XKC C12 C02 SING N N 20 
XKC C10 H1  SING N N 21 
XKC C15 H2  SING N N 22 
XKC C15 H3  SING N N 23 
XKC C02 H4  SING N N 24 
XKC C02 H5  SING N N 25 
XKC C02 H6  SING N N 26 
XKC C04 H7  SING N N 27 
XKC C04 H8  SING N N 28 
XKC C04 H9  SING N N 29 
XKC C05 H10 SING N N 30 
XKC C05 H11 SING N N 31 
XKC C06 H12 SING N N 32 
XKC C06 H13 SING N N 33 
XKC C11 H14 SING N N 34 
XKC O09 H15 SING N N 35 
XKC O17 H16 SING N N 36 
XKC O20 H17 SING N N 37 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
XKC SMILES           ACDLabs              12.01 "COc1ncc(C)cc1CCC(O)(CC(=O)O)C(=O)O"                                                                                            
XKC InChI            InChI                1.06  "InChI=1S/C13H17NO6/c1-8-5-9(11(20-2)14-7-8)3-4-13(19,12(17)18)6-10(15)16/h5,7,19H,3-4,6H2,1-2H3,(H,15,16)(H,17,18)/t13-/m1/s1" 
XKC InChIKey         InChI                1.06  FGYMJXFSHBLHLW-CYBMUJFWSA-N                                                                                                     
XKC SMILES_CANONICAL CACTVS               3.385 "COc1ncc(C)cc1CC[C@@](O)(CC(O)=O)C(O)=O"                                                                                        
XKC SMILES           CACTVS               3.385 "COc1ncc(C)cc1CC[C](O)(CC(O)=O)C(O)=O"                                                                                          
XKC SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cc(c(nc1)OC)CC[C@@](CC(=O)O)(C(=O)O)O"                                                                                      
XKC SMILES           "OpenEye OEToolkits" 2.0.7 "Cc1cc(c(nc1)OC)CCC(CC(=O)O)(C(=O)O)O"                                                                                          
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
XKC "SYSTEMATIC NAME" ACDLabs              12.01 "(2R)-2-hydroxy-2-[2-(2-methoxy-5-methylpyridin-3-yl)ethyl]butanedioic acid"       
XKC "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R})-2-[2-(2-methoxy-5-methyl-pyridin-3-yl)ethyl]-2-oxidanyl-butanedioic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
XKC "Create component" 2023-11-03 RCSB 
XKC "Initial release"  2024-12-25 RCSB 
# 
