data_WKC
# 
_chem_comp.id                                    WKC 
_chem_comp.name                                  "5-[(3R)-3-(3-methyl-2-oxoimidazolidin-1-yl)piperidin-1-yl]-3-[4-(piperidin-4-yl)anilino]pyrazine-2-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H34 N8 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-09-19 
_chem_comp.pdbx_modified_date                    2023-02-10 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        478.590 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     WKC 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8EJB 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
WKC C11 C1  C 0 1 N N N 8.715  -4.732 -17.015 3.709  0.598  1.012  C11 WKC 1  
WKC C12 C2  C 0 1 Y N N 8.139  -5.724 -14.712 1.662  1.588  0.414  C12 WKC 2  
WKC C13 C3  C 0 1 Y N N 7.222  -6.235 -13.800 2.385  2.784  0.468  C13 WKC 3  
WKC C01 C4  C 0 1 N N N 14.189 -5.895 -19.663 4.742  -4.609 -1.952 C01 WKC 4  
WKC C03 C5  C 0 1 N N N 12.090 -4.418 -20.110 3.942  -2.155 -2.336 C03 WKC 5  
WKC C04 C6  C 0 1 N N N 10.635 -4.425 -19.561 3.838  -0.961 -1.368 C04 WKC 6  
WKC C06 C7  C 0 1 N N R 9.373  -5.938 -17.803 4.405  -0.756 1.170  C06 WKC 7  
WKC C07 C8  C 0 1 N N N 8.327  -6.608 -18.661 3.723  -1.546 2.290  C07 WKC 8  
WKC C08 C9  C 0 1 N N N 7.170  -7.113 -17.823 2.237  -1.710 1.957  C08 WKC 9  
WKC C09 C10 C 0 1 N N N 6.611  -6.019 -16.855 1.605  -0.329 1.775  C09 WKC 10 
WKC C15 C11 C 0 1 Y N N 8.983  -6.496 -12.213 0.497  3.954  -0.104 C15 WKC 11 
WKC C16 C12 C 0 1 N N N 9.400  -6.928 -10.816 -0.168 5.237  -0.394 C16 WKC 12 
WKC C19 C13 C 0 1 Y N N 9.935  -5.993 -13.085 -0.233 2.755  -0.159 C19 WKC 13 
WKC C21 C14 C 0 1 Y N N 12.555 -5.504 -13.497 -2.333 1.602  -0.405 C21 WKC 14 
WKC C22 C15 C 0 1 Y N N 12.353 -5.264 -14.877 -1.751 0.377  -0.706 C22 WKC 15 
WKC C23 C16 C 0 1 Y N N 13.445 -4.904 -15.750 -2.499 -0.781 -0.621 C23 WKC 16 
WKC C24 C17 C 0 1 Y N N 14.746 -4.785 -15.211 -3.826 -0.722 -0.237 C24 WKC 17 
WKC C25 C18 C 0 1 Y N N 14.976 -5.024 -13.832 -4.409 0.496  0.064  C25 WKC 18 
WKC C26 C19 C 0 1 Y N N 13.882 -5.379 -12.954 -3.666 1.658  -0.019 C26 WKC 19 
WKC C27 C20 C 0 1 N N N 16.009 -4.397 -16.212 -4.640 -1.987 -0.145 C27 WKC 20 
WKC C28 C21 C 0 1 N N N 16.749 -5.707 -16.636 -5.836 -1.896 -1.097 C28 WKC 21 
WKC C29 C22 C 0 1 N N N 18.111 -5.569 -17.357 -6.691 -3.157 -0.956 C29 WKC 22 
WKC C31 C23 C 0 1 N N N 18.399 -3.280 -16.335 -6.026 -3.418 1.360  C31 WKC 23 
WKC C32 C24 C 0 1 N N N 17.057 -3.460 -15.558 -5.150 -2.165 1.287  C32 WKC 24 
WKC C34 C25 C 0 1 N N N 11.832 -6.165 -18.546 4.640  -2.792 -0.248 C34 WKC 25 
WKC N02 N1  N 0 1 N N N 12.788 -5.539 -19.437 4.463  -3.245 -1.496 N02 WKC 26 
WKC N05 N2  N 0 1 N N N 10.557 -5.543 -18.591 4.310  -1.504 -0.086 N05 WKC 27 
WKC N10 N3  N 0 1 N N N 7.671  -5.256 -16.076 2.291  0.387  0.693  N10 WKC 28 
WKC N14 N4  N 0 1 Y N N 7.695  -6.612 -12.540 1.792  3.928  0.210  N14 WKC 29 
WKC N17 N5  N 0 1 N N N 8.580  -7.525 -9.858  0.557  6.371  -0.464 N17 WKC 30 
WKC N20 N6  N 0 1 N N N 11.387 -5.871 -12.646 -1.577 2.775  -0.485 N20 WKC 31 
WKC N30 N7  N 0 1 N N N 19.075 -4.640 -16.589 -7.155 -3.282 0.432  N30 WKC 32 
WKC N33 N8  N 0 1 Y N N 9.466  -5.592 -14.352 0.372  1.602  0.103  N33 WKC 33 
WKC O18 O1  O 0 1 N N N 10.588 -6.678 -10.544 -1.371 5.273  -0.569 O18 WKC 34 
WKC O35 O2  O 0 1 N N N 12.077 -7.134 -17.836 5.063  -3.487 0.655  O35 WKC 35 
WKC H1  H1  H 0 1 N N N 9.490  -4.202 -16.442 3.793  1.161  1.942  H1  WKC 36 
WKC H2  H2  H 0 1 N N N 8.249  -4.038 -17.730 4.183  1.158  0.205  H2  WKC 37 
WKC H3  H3  H 0 1 N N N 6.178  -6.337 -14.057 3.435  2.768  0.723  H3  WKC 38 
WKC H4  H4  H 0 1 N N N 14.453 -6.762 -19.040 5.773  -4.671 -2.303 H4  WKC 39 
WKC H5  H5  H 0 1 N N N 14.337 -6.148 -20.723 4.597  -5.305 -1.127 H5  WKC 40 
WKC H6  H6  H 0 1 N N N 14.831 -5.043 -19.396 4.065  -4.865 -2.768 H6  WKC 41 
WKC H7  H7  H 0 1 N N N 12.088 -4.569 -21.200 2.960  -2.414 -2.733 H7  WKC 42 
WKC H8  H8  H 0 1 N N N 10.413 -3.471 -19.060 4.480  -0.144 -1.697 H8  WKC 43 
WKC H9  H9  H 0 1 N N N 9.698  -6.668 -17.047 5.453  -0.599 1.422  H9  WKC 44 
WKC H10 H10 H 0 1 N N N 8.786  -7.458 -19.188 4.187  -2.529 2.378  H10 WKC 45 
WKC H11 H11 H 0 1 N N N 7.948  -5.883 -19.396 3.827  -1.008 3.232  H11 WKC 46 
WKC H12 H12 H 0 1 N N N 6.362  -7.436 -18.495 2.132  -2.283 1.035  H12 WKC 47 
WKC H13 H13 H 0 1 N N N 7.514  -7.970 -17.226 1.737  -2.235 2.771  H13 WKC 48 
WKC H14 H14 H 0 1 N N N 6.037  -5.295 -17.452 0.550  -0.442 1.524  H14 WKC 49 
WKC H15 H15 H 0 1 N N N 5.943  -6.510 -16.133 1.698  0.238  2.702  H15 WKC 50 
WKC H16 H16 H 0 1 N N N 11.358 -5.352 -15.287 -0.715 0.330  -1.007 H16 WKC 51 
WKC H17 H17 H 0 1 N N N 13.270 -4.728 -16.801 -2.048 -1.734 -0.855 H17 WKC 52 
WKC H18 H18 H 0 1 N N N 15.976 -4.940 -13.434 -5.445 0.539  0.363  H18 WKC 53 
WKC H19 H19 H 0 1 N N N 14.059 -5.548 -11.902 -4.120 2.608  0.220  H19 WKC 54 
WKC H20 H20 H 0 1 N N N 15.596 -3.911 -17.108 -4.019 -2.840 -0.419 H20 WKC 55 
WKC H21 H21 H 0 1 N N N 16.077 -6.260 -17.309 -6.434 -1.020 -0.847 H21 WKC 56 
WKC H22 H22 H 0 1 N N N 16.920 -6.297 -15.723 -5.478 -1.812 -2.124 H22 WKC 57 
WKC H23 H23 H 0 1 N N N 18.570 -6.565 -17.444 -7.551 -3.090 -1.622 H23 WKC 58 
WKC H24 H24 H 0 1 N N N 17.942 -5.154 -18.362 -6.096 -4.032 -1.219 H24 WKC 59 
WKC H25 H25 H 0 1 N N N 19.076 -2.647 -15.743 -5.433 -4.291 1.086  H25 WKC 60 
WKC H26 H26 H 0 1 N N N 18.194 -2.794 -17.300 -6.403 -3.539 2.375  H26 WKC 61 
WKC H27 H27 H 0 1 N N N 17.296 -3.866 -14.564 -4.303 -2.273 1.965  H27 WKC 62 
WKC H28 H28 H 0 1 N N N 16.597 -2.467 -15.448 -5.738 -1.293 1.575  H28 WKC 63 
WKC H29 H29 H 0 1 N N N 8.948  -7.751 -8.956  1.517  6.342  -0.325 H29 WKC 64 
WKC H30 H30 H 0 1 N N N 7.625  -7.727 -10.074 0.120  7.215  -0.655 H30 WKC 65 
WKC H31 H31 H 0 1 N N N 11.579 -6.057 -11.682 -1.995 3.603  -0.769 H31 WKC 66 
WKC H32 H32 H 0 1 N N N 19.314 -5.060 -15.714 -7.742 -2.502 0.688  H32 WKC 67 
WKC H34 H34 H 0 1 N N N 12.583 -3.464 -19.873 4.636  -1.932 -3.146 H34 WKC 68 
WKC H35 H35 H 0 1 N N N 9.920  -4.583 -20.382 2.804  -0.626 -1.284 H35 WKC 69 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
WKC C03 C04 SING N N 1  
WKC C03 N02 SING N N 2  
WKC C01 N02 SING N N 3  
WKC C04 N05 SING N N 4  
WKC N02 C34 SING N N 5  
WKC C07 C08 SING N N 6  
WKC C07 C06 SING N N 7  
WKC N05 C34 SING N N 8  
WKC N05 C06 SING N N 9  
WKC C34 O35 DOUB N N 10 
WKC C08 C09 SING N N 11 
WKC C06 C11 SING N N 12 
WKC C29 C28 SING N N 13 
WKC C29 N30 SING N N 14 
WKC C11 N10 SING N N 15 
WKC C09 N10 SING N N 16 
WKC C28 C27 SING N N 17 
WKC N30 C31 SING N N 18 
WKC C31 C32 SING N N 19 
WKC C27 C32 SING N N 20 
WKC C27 C24 SING N N 21 
WKC N10 C12 SING N N 22 
WKC C23 C24 DOUB Y N 23 
WKC C23 C22 SING Y N 24 
WKC C24 C25 SING Y N 25 
WKC C22 C21 DOUB Y N 26 
WKC C12 N33 DOUB Y N 27 
WKC C12 C13 SING Y N 28 
WKC N33 C19 SING Y N 29 
WKC C25 C26 DOUB Y N 30 
WKC C13 N14 DOUB Y N 31 
WKC C21 C26 SING Y N 32 
WKC C21 N20 SING N N 33 
WKC C19 N20 SING N N 34 
WKC C19 C15 DOUB Y N 35 
WKC N14 C15 SING Y N 36 
WKC C15 C16 SING N N 37 
WKC C16 O18 DOUB N N 38 
WKC C16 N17 SING N N 39 
WKC C11 H1  SING N N 40 
WKC C11 H2  SING N N 41 
WKC C13 H3  SING N N 42 
WKC C01 H4  SING N N 43 
WKC C01 H5  SING N N 44 
WKC C01 H6  SING N N 45 
WKC C03 H7  SING N N 46 
WKC C04 H8  SING N N 47 
WKC C06 H9  SING N N 48 
WKC C07 H10 SING N N 49 
WKC C07 H11 SING N N 50 
WKC C08 H12 SING N N 51 
WKC C08 H13 SING N N 52 
WKC C09 H14 SING N N 53 
WKC C09 H15 SING N N 54 
WKC C22 H16 SING N N 55 
WKC C23 H17 SING N N 56 
WKC C25 H18 SING N N 57 
WKC C26 H19 SING N N 58 
WKC C27 H20 SING N N 59 
WKC C28 H21 SING N N 60 
WKC C28 H22 SING N N 61 
WKC C29 H23 SING N N 62 
WKC C29 H24 SING N N 63 
WKC C31 H25 SING N N 64 
WKC C31 H26 SING N N 65 
WKC C32 H27 SING N N 66 
WKC C32 H28 SING N N 67 
WKC N17 H29 SING N N 68 
WKC N17 H30 SING N N 69 
WKC N20 H31 SING N N 70 
WKC N30 H32 SING N N 71 
WKC C03 H34 SING N N 72 
WKC C04 H35 SING N N 73 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
WKC SMILES           ACDLabs              12.01 "NC(=O)c1ncc(nc1Nc1ccc(cc1)C1CCNCC1)N1CCCC(C1)N1CCN(C)C1=O"                                                                                                                                              
WKC InChI            InChI                1.06  "InChI=1S/C25H34N8O2/c1-31-13-14-33(25(31)35)20-3-2-12-32(16-20)21-15-28-22(23(26)34)24(30-21)29-19-6-4-17(5-7-19)18-8-10-27-11-9-18/h4-7,15,18,20,27H,2-3,8-14,16H2,1H3,(H2,26,34)(H,29,30)/t20-/m1/s1" 
WKC InChIKey         InChI                1.06  JCGXVYWABUYORV-HXUWFJFHSA-N                                                                                                                                                                              
WKC SMILES_CANONICAL CACTVS               3.385 "CN1CCN([C@@H]2CCCN(C2)c3cnc(C(N)=O)c(Nc4ccc(cc4)C5CCNCC5)n3)C1=O"                                                                                                                                       
WKC SMILES           CACTVS               3.385 "CN1CCN([CH]2CCCN(C2)c3cnc(C(N)=O)c(Nc4ccc(cc4)C5CCNCC5)n3)C1=O"                                                                                                                                         
WKC SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN1CCN(C1=O)[C@@H]2CCCN(C2)c3cnc(c(n3)Nc4ccc(cc4)C5CCNCC5)C(=O)N"                                                                                                                                       
WKC SMILES           "OpenEye OEToolkits" 2.0.7 "CN1CCN(C1=O)C2CCCN(C2)c3cnc(c(n3)Nc4ccc(cc4)C5CCNCC5)C(=O)N"                                                                                                                                            
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
WKC "SYSTEMATIC NAME" ACDLabs              12.01 "5-[(3R)-3-(3-methyl-2-oxoimidazolidin-1-yl)piperidin-1-yl]-3-[4-(piperidin-4-yl)anilino]pyrazine-2-carboxamide"                   
WKC "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "5-[(3~{R})-3-(3-methyl-2-oxidanylidene-imidazolidin-1-yl)piperidin-1-yl]-3-[(4-piperidin-4-ylphenyl)amino]pyrazine-2-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
WKC "Create component" 2022-09-19 RCSB 
WKC "Initial release"  2023-02-15 RCSB 
# 
