data_TMC
#

_chem_comp.id                                   TMC
_chem_comp.name                                 "1-[4-HYDROXY-5-(HYDROXYMETHYL)BICYCLO[3.1.0]HEX-2-YL]-5-METHYLPYRIMIDINE-2,4(1H,3H)-DIONE"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C12 H16 N2 O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "(N)-METHANOCARBA-THYMIDINE"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2000-05-24
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       252.266
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    TMC
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1E2K
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
TMC  O16   O16   O  0  1  N  N  N  16.913  22.672  10.165   1.992  -0.205  -3.603  O16   TMC   1  
TMC  O18   O18   O  0  1  N  N  N  17.280  19.009  10.388  -0.002   1.826  -3.081  O18   TMC   2  
TMC  O9    O9    O  0  1  N  N  N  22.821  20.430   8.588  -2.578  -0.139   2.082  O9    TMC   3  
TMC  O7    O7    O  0  1  N  N  N  23.431  24.760  10.040   1.324   0.078   4.187  O7    TMC   4  
TMC  N8    N8    N  0  1  Y  N  N  20.924  21.677   9.166  -0.744  -0.081   0.844  N8    TMC   5  
TMC  N5    N5    N  0  1  Y  N  N  23.066  22.579   9.256  -0.660  -0.028   3.183  N5    TMC   6  
TMC  C1    C1    C  0  1  N  N  R  17.569  20.884   8.780  -0.029  -0.493  -2.311  C1    TMC   7  
TMC  C10   C10   C  0  1  N  N  S  18.087  20.141  10.004  -0.052   0.998  -1.918  C10   TMC   8  
TMC  C14   C14   C  0  1  N  N  N  19.551  19.791   9.800  -1.405   1.176  -1.184  C14   TMC   9  
TMC  C17   C17   C  0  1  N  N  S  19.990  20.664   8.542  -1.537  -0.144  -0.386  C17   TMC  10  
TMC  C13   C13   C  0  1  N  N  S  18.731  21.255   7.866  -0.975  -1.222  -1.336  C13   TMC  11  
TMC  C15   C15   C  0  1  N  N  N  17.697  20.226   7.441  -1.317  -1.118  -2.850  C15   TMC  12  
TMC  C12   C12   C  0  1  N  N  N  16.476  21.878   9.032   1.319  -1.095  -2.711  C12   TMC  13  
TMC  C11   C11   C  0  1  Y  N  N  22.273  21.466   8.999  -1.364  -0.084   2.037  C11   TMC  14  
TMC  C6    C6    C  0  1  Y  N  N  22.662  23.812   9.778   0.686   0.027   3.151  C6    TMC  15  
TMC  C4    C4    C  0  1  Y  N  N  21.232  23.939   9.965   1.351   0.036   1.902  C4    TMC  16  
TMC  C2    C2    C  0  1  Y  N  N  20.439  22.885   9.659   0.620  -0.021   0.768  C2    TMC  17  
TMC  C3    C3    C  0  1  N  N  N  20.660  25.271  10.449   2.855   0.102   1.838  C3    TMC  18  
TMC  H16   H16   H  0  1  N  N  N  16.220  23.302  10.324   2.835  -0.621  -3.830  H16   TMC  19  
TMC  H18   H18   H  0  1  N  N  N  17.603  18.545  11.151  -0.079   2.741  -2.777  H18   TMC  20  
TMC  H5    H5    H  0  1  N  N  N  24.057  22.479   9.036  -1.123  -0.030   4.035  H5    TMC  21  
TMC  H10   H10   H  0  1  N  N  N  18.003  20.827  10.878   0.777   1.229  -1.250  H10   TMC  22  
TMC  H142  2H14  H  0  0  N  N  N  20.186  19.939  10.703  -2.221   1.279  -1.898  H142  TMC  23  
TMC  H141  1H14  H  0  0  N  N  N  19.748  18.699   9.690  -1.369   2.032  -0.510  H141  TMC  24  
TMC  H17   H17   H  0  1  N  N  N  20.500  20.118   7.714  -2.582  -0.347  -0.154  H17   TMC  25  
TMC  H13   H13   H  0  1  N  N  N  19.160  22.144   7.349  -0.718  -2.193  -0.912  H13   TMC  26  
TMC  H152  2H15  H  0  0  N  N  N  17.743  19.168   7.089  -2.117  -0.442  -3.150  H152  TMC  27  
TMC  H151  1H15  H  0  0  N  N  N  17.025  20.109   6.558  -1.224  -2.028  -3.444  H151  TMC  28  
TMC  H122  2H12  H  0  0  N  N  N  15.473  21.410   9.175   1.928  -1.245  -1.819  H122  TMC  29  
TMC  H121  1H12  H  0  0  N  N  N  16.213  22.487   8.136   1.157  -2.052  -3.206  H121  TMC  30  
TMC  H2    H2    H  0  1  N  N  N  19.355  23.015   9.817   1.111  -0.020  -0.194  H2    TMC  31  
TMC  H33   3H3   H  0  1  N  N  N  19.558  25.368  10.593   3.260   0.142   2.849  H33   TMC  32  
TMC  H32   2H3   H  0  1  N  N  N  21.171  25.557  11.397   3.237  -0.782   1.329  H32   TMC  33  
TMC  H31   1H3   H  0  1  N  N  N  21.004  26.079   9.762   3.157   0.995   1.290  H31   TMC  34  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
TMC  O16  C12   SING  N  N   1  
TMC  O16  H16   SING  N  N   2  
TMC  O18  C10   SING  N  N   3  
TMC  O18  H18   SING  N  N   4  
TMC  O9   C11   DOUB  N  N   5  
TMC  O7   C6    DOUB  N  N   6  
TMC  N8   C17   SING  N  N   7  
TMC  N8   C11   SING  Y  N   8  
TMC  N8   C2    SING  Y  N   9  
TMC  N5   C11   SING  Y  N  10  
TMC  N5   C6    SING  Y  N  11  
TMC  N5   H5    SING  N  N  12  
TMC  C1   C10   SING  N  N  13  
TMC  C1   C13   SING  N  N  14  
TMC  C1   C15   SING  N  N  15  
TMC  C1   C12   SING  N  N  16  
TMC  C10  C14   SING  N  N  17  
TMC  C10  H10   SING  N  N  18  
TMC  C14  C17   SING  N  N  19  
TMC  C14  H142  SING  N  N  20  
TMC  C14  H141  SING  N  N  21  
TMC  C17  C13   SING  N  N  22  
TMC  C17  H17   SING  N  N  23  
TMC  C13  C15   SING  N  N  24  
TMC  C13  H13   SING  N  N  25  
TMC  C15  H152  SING  N  N  26  
TMC  C15  H151  SING  N  N  27  
TMC  C12  H122  SING  N  N  28  
TMC  C12  H121  SING  N  N  29  
TMC  C6   C4    SING  Y  N  30  
TMC  C4   C2    DOUB  Y  N  31  
TMC  C4   C3    SING  N  N  32  
TMC  C2   H2    SING  N  N  33  
TMC  C3   H33   SING  N  N  34  
TMC  C3   H32   SING  N  N  35  
TMC  C3   H31   SING  N  N  36  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
TMC  SMILES            ACDLabs               10.04  "O=C1C(=CN(C(=O)N1)C3C2C(CO)(C2)C(O)C3)C"  
TMC  SMILES_CANONICAL  CACTVS                3.341  "CC1=CN([C@H]2C[C@H](O)[C@]3(CO)C[C@H]23)C(=O)NC1=O"  
TMC  SMILES            CACTVS                3.341  "CC1=CN([CH]2C[CH](O)[C]3(CO)C[CH]23)C(=O)NC1=O"  
TMC  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "CC1=CN(C(=O)NC1=O)[C@H]2C[C@@H]([C@]3([C@@H]2C3)CO)O"  
TMC  SMILES            "OpenEye OEToolkits"  1.5.0  "CC1=CN(C(=O)NC1=O)C2CC(C3(C2C3)CO)O"  
TMC  InChI             InChI                 1.03   "InChI=1S/C12H16N2O4/c1-6-4-14(11(18)13-10(6)17)8-2-9(16)12(5-15)3-7(8)12/h4,7-9,15-16H,2-3,5H2,1H3,(H,13,17,18)/t7-,8+,9+,12+/m1/s1"  
TMC  InChIKey          InChI                 1.03   NOWRLNPOENZFHP-ARHDFHRDSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
TMC  "SYSTEMATIC NAME"  ACDLabs               10.04  "1-[(1S,2S,4S,5R)-4-hydroxy-5-(hydroxymethyl)bicyclo[3.1.0]hex-2-yl]-5-methylpyrimidine-2,4(1H,3H)-dione"  
TMC  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "1-[(1R,2S,4S,5S)-2-hydroxy-1-(hydroxymethyl)-4-bicyclo[3.1.0]hexanyl]-5-methyl-pyrimidine-2,4-dione"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
TMC  "Create component"   2000-05-24  EBI   
TMC  "Modify descriptor"  2011-06-04  RCSB  
TMC  "Modify synonyms"    2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     TMC
_pdbx_chem_comp_synonyms.name        "(N)-METHANOCARBA-THYMIDINE"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
