data_TKC
# 
_chem_comp.id                                    TKC 
_chem_comp.name                                  "(2~{R})-5-[[[[(2~{R},3~{S},4~{S},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-2-azanyl-5-oxidanylidene-pentanoic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C15 H23 N6 O16 P3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-04-26 
_chem_comp.pdbx_modified_date                    2024-04-12 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        636.295 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     TKC 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8J0E 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
TKC C02 C1  C 0 1 Y N N N N N 158.594 106.143 134.488 7.877   -4.160 -1.008 C02 TKC 1  
TKC C04 C2  C 0 1 Y N N N N N 157.943 108.118 133.513 8.576   -3.726 1.148  C04 TKC 2  
TKC C06 C3  C 0 1 Y N N N N N 156.854 107.458 135.467 6.981   -2.323 0.271  C06 TKC 3  
TKC C07 C4  C 0 1 Y N N N N N 157.643 106.328 135.504 7.007   -3.059 -0.925 C07 TKC 4  
TKC C09 C5  C 0 1 Y N N N N N 156.294 106.306 137.204 5.563   -1.462 -1.181 C09 TKC 5  
TKC C11 C6  C 0 1 N N R N N N 155.004 108.403 136.925 5.685   -0.294 1.052  C11 TKC 6  
TKC C13 C7  C 0 1 N N R N N N 152.933 108.236 136.165 4.317   1.547  1.373  C13 TKC 7  
TKC C14 C8  C 0 1 N N N N N N 151.902 107.728 135.132 3.499   2.510  0.511  C14 TKC 8  
TKC C28 C9  C 0 1 N N N N N N 142.458 106.736 133.494 -6.282  -0.592 -0.075 C28 TKC 9  
TKC C30 C10 C 0 1 N N N N N N 140.999 107.011 133.912 -6.909  -1.726 0.696  C30 TKC 10 
TKC C31 C11 C 0 1 N N N N N N 139.995 106.030 133.264 -8.361  -1.906 0.247  C31 TKC 11 
TKC C32 C12 C 0 1 N N R N N N 138.569 106.625 133.163 -8.997  -3.056 1.030  C32 TKC 12 
TKC C34 C13 C 0 1 N N N N N N 138.406 107.887 134.021 -10.386 -3.314 0.503  C34 TKC 13 
TKC C37 C14 C 0 1 N N S N N N 153.567 109.659 135.675 5.760   2.068  1.521  C37 TKC 14 
TKC C39 C15 C 0 1 N N S N N N 154.578 109.843 136.454 6.636   0.926  0.952  C39 TKC 15 
TKC N01 N1  N 0 1 N N N N N N 159.445 104.960 134.497 7.946   -4.923 -2.161 N01 TKC 16 
TKC N03 N2  N 0 1 Y N N N N N 158.717 107.040 133.524 8.635   -4.448 0.044  N03 TKC 17 
TKC N05 N3  N 0 1 Y N N N N N 157.035 108.322 134.458 7.773   -2.691 1.273  N05 TKC 18 
TKC N08 N4  N 0 1 Y N N N N N 157.267 105.641 136.594 6.119   -2.481 -1.769 N08 TKC 19 
TKC N10 N5  N 0 1 Y N N N N N 156.023 107.413 136.531 6.062   -1.323 0.080  N10 TKC 20 
TKC N33 N6  N 0 1 N N N N N N 137.585 105.622 133.573 -9.071  -2.699 2.453  N33 TKC 21 
TKC O12 O1  O 0 1 N N N N N N 153.981 107.454 136.268 4.391   0.261  0.734  O12 TKC 22 
TKC O15 O2  O 0 1 N N N N N N 150.862 108.680 135.087 2.140   2.071  0.464  O15 TKC 23 
TKC O17 O3  O 0 1 N N N N N N 149.368 106.875 136.180 0.946   4.262  0.084  O17 TKC 24 
TKC O18 O4  O 0 1 N N N N N N 148.638 109.220 136.316 1.326   2.789  -1.930 O18 TKC 25 
TKC O19 O5  O 0 1 N N N N N N 148.476 108.018 134.049 -0.431  2.152  -0.081 O19 TKC 26 
TKC O21 O6  O 0 1 N N N N N N 147.731 110.488 134.047 -2.384  3.691  0.773  O21 TKC 27 
TKC O22 O7  O 0 1 N N N N N N 147.334 109.139 132.036 -2.091  3.178  -1.681 O22 TKC 28 
TKC O23 O8  O 0 1 N N N N N N 145.871 108.675 134.116 -2.918  1.308  -0.202 O23 TKC 29 
TKC O25 O9  O 0 1 N N N N N N 144.761 107.740 131.982 -5.269  2.161  -0.540 O25 TKC 30 
TKC O26 O10 O 0 1 N N N N N N 145.720 106.143 133.598 -4.364  0.556  -2.265 O26 TKC 31 
TKC O27 O11 O 0 1 N N N N N N 143.513 107.345 134.193 -5.004  -0.252 0.154  O27 TKC 32 
TKC O29 O12 O 0 1 N N N N N N 142.688 106.010 132.587 -6.930  0.010  -0.898 O29 TKC 33 
TKC O35 O13 O 0 1 N N N N N N 138.118 107.786 135.242 -10.556 -4.028 -0.621 O35 TKC 34 
TKC O36 O14 O 0 1 N N N N N N 138.559 109.027 133.502 -11.346 -2.878 1.093  O36 TKC 35 
TKC O38 O15 O 0 1 N N N N N N 152.625 110.691 135.842 6.069   2.298  2.898  O38 TKC 36 
TKC O40 O16 O 0 1 N N N N N N 155.628 110.465 135.759 6.992   1.185  -0.407 O40 TKC 37 
TKC P16 P1  P 0 1 N N N N N N 149.324 108.193 135.449 0.994   2.850  -0.356 P16 TKC 38 
TKC P20 P2  P 0 1 N N N N N N 147.357 109.115 133.544 -1.959  2.595  -0.328 P20 TKC 39 
TKC P24 P3  P 0 1 N N N N N N 144.983 107.452 133.447 -4.408  0.970  -0.710 P24 TKC 40 
TKC H1  H1  H 0 1 N N N N N N 158.055 108.843 132.720 9.210   -3.995 1.980  H1  TKC 41 
TKC H2  H2  H 0 1 N N N N N N 155.799 105.992 138.111 4.817   -0.821 -1.627 H2  TKC 42 
TKC H3  H3  H 0 1 N N N N N N 154.863 108.353 138.015 5.690   -0.702 2.063  H3  TKC 43 
TKC H4  H4  H 0 1 N N N N N N 152.428 108.400 137.128 3.856   1.447  2.356  H4  TKC 44 
TKC H5  H5  H 0 1 N N N N N N 151.506 106.750 135.443 3.543   3.510  0.942  H5  TKC 45 
TKC H6  H6  H 0 1 N N N N N N 152.373 107.635 134.142 3.909   2.532  -0.499 H6  TKC 46 
TKC H7  H7  H 0 1 N N N N N N 140.734 108.035 133.610 -6.354  -2.644 0.507  H7  TKC 47 
TKC H8  H8  H 0 1 N N N N N N 140.924 106.920 135.006 -6.884  -1.498 1.762  H8  TKC 48 
TKC H9  H9  H 0 1 N N N N N N 139.953 105.114 133.872 -8.916  -0.987 0.437  H9  TKC 49 
TKC H10 H10 H 0 1 N N N N N N 140.347 105.782 132.252 -8.386  -2.133 -0.818 H10 TKC 50 
TKC H11 H11 H 0 1 N N N N N N 138.388 106.898 132.113 -8.392  -3.955 0.911  H11 TKC 51 
TKC H12 H12 H 0 1 N N N N N N 153.853 109.556 134.618 5.897   2.981  0.943  H12 TKC 52 
TKC H13 H13 H 0 1 N N N N N N 154.313 110.428 137.347 7.526   0.776  1.564  H13 TKC 53 
TKC H14 H14 H 0 1 N N N N N N 160.060 104.985 133.709 7.390   -4.700 -2.924 H14 TKC 54 
TKC H15 H15 H 0 1 N N N N N N 159.984 104.944 135.339 8.550   -5.680 -2.206 H15 TKC 55 
TKC H16 H16 H 0 1 N N N N N N 136.666 106.010 133.507 -9.628  -1.869 2.588  H16 TKC 56 
TKC H17 H17 H 0 1 N N N N N N 137.654 104.824 132.975 -9.429  -3.468 3.000  H17 TKC 57 
TKC H19 H19 H 0 1 N N N N N N 148.379 108.819 137.138 1.373   1.893  -2.288 H19 TKC 58 
TKC H20 H20 H 0 1 N N N N N N 147.871 111.069 133.309 -2.322  3.377  1.685  H20 TKC 59 
TKC H21 H21 H 0 1 N N N N N N 145.890 105.774 132.739 -3.816  -0.219 -2.451 H21 TKC 60 
TKC H22 H22 H 0 1 N N N N N N 138.053 108.653 135.625 -11.465 -4.167 -0.919 H22 TKC 61 
TKC H23 H23 H 0 1 N N N N N N 153.002 111.514 135.555 6.966   2.627  3.049  H23 TKC 62 
TKC H24 H24 H 0 1 N N N N N N 156.364 110.593 136.345 7.513   1.990  -0.530 H24 TKC 63 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
TKC O25 P24 DOUB N N 1  
TKC O22 P20 DOUB N N 2  
TKC O29 C28 DOUB N N 3  
TKC C32 C31 SING N N 4  
TKC C32 N33 SING N N 5  
TKC C32 C34 SING N N 6  
TKC C31 C30 SING N N 7  
TKC P24 O26 SING N N 8  
TKC P24 O23 SING N N 9  
TKC P24 O27 SING N N 10 
TKC C28 C30 SING N N 11 
TKC C28 O27 SING N N 12 
TKC O36 C34 DOUB N N 13 
TKC C04 N03 DOUB Y N 14 
TKC C04 N05 SING Y N 15 
TKC N03 C02 SING Y N 16 
TKC P20 O21 SING N N 17 
TKC P20 O19 SING N N 18 
TKC P20 O23 SING N N 19 
TKC C34 O35 SING N N 20 
TKC O19 P16 SING N N 21 
TKC N05 C06 DOUB Y N 22 
TKC C02 N01 SING N N 23 
TKC C02 C07 DOUB Y N 24 
TKC O15 C14 SING N N 25 
TKC O15 P16 SING N N 26 
TKC C14 C13 SING N N 27 
TKC P16 O17 DOUB N N 28 
TKC P16 O18 SING N N 29 
TKC C06 C07 SING Y N 30 
TKC C06 N10 SING Y N 31 
TKC C07 N08 SING Y N 32 
TKC C37 O38 SING N N 33 
TKC C37 C13 SING N N 34 
TKC C37 C39 SING N N 35 
TKC O40 C39 SING N N 36 
TKC C13 O12 SING N N 37 
TKC O12 C11 SING N N 38 
TKC C39 C11 SING N N 39 
TKC N10 C11 SING N N 40 
TKC N10 C09 SING Y N 41 
TKC N08 C09 DOUB Y N 42 
TKC C04 H1  SING N N 43 
TKC C09 H2  SING N N 44 
TKC C11 H3  SING N N 45 
TKC C13 H4  SING N N 46 
TKC C14 H5  SING N N 47 
TKC C14 H6  SING N N 48 
TKC C30 H7  SING N N 49 
TKC C30 H8  SING N N 50 
TKC C31 H9  SING N N 51 
TKC C31 H10 SING N N 52 
TKC C32 H11 SING N N 53 
TKC C37 H12 SING N N 54 
TKC C39 H13 SING N N 55 
TKC N01 H14 SING N N 56 
TKC N01 H15 SING N N 57 
TKC N33 H16 SING N N 58 
TKC N33 H17 SING N N 59 
TKC O18 H19 SING N N 60 
TKC O21 H20 SING N N 61 
TKC O26 H21 SING N N 62 
TKC O35 H22 SING N N 63 
TKC O38 H23 SING N N 64 
TKC O40 H24 SING N N 65 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
TKC InChI            InChI                1.06  "InChI=1S/C15H23N6O16P3/c16-6(15(25)26)1-2-8(22)35-39(29,30)37-40(31,32)36-38(27,28)33-3-7-10(23)11(24)14(34-7)21-5-20-9-12(17)18-4-19-13(9)21/h4-7,10-11,14,23-24H,1-3,16H2,(H,25,26)(H,27,28)(H,29,30)(H,31,32)(H2,17,18,19)/t6-,7-,10-,11+,14-/m1/s1" 
TKC InChIKey         InChI                1.06  QSUGRYKGICURGW-CMYFRRJGSA-N                                                                                                                                                                                                                              
TKC SMILES_CANONICAL CACTVS               3.385 "N[C@H](CCC(=O)O[P](O)(=O)O[P](O)(=O)O[P](O)(=O)OC[C@H]1O[C@H]([C@@H](O)[C@@H]1O)n2cnc3c(N)ncnc23)C(O)=O"                                                                                                                                                
TKC SMILES           CACTVS               3.385 "N[CH](CCC(=O)O[P](O)(=O)O[P](O)(=O)O[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23)C(O)=O"                                                                                                                                                       
TKC SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)[C@H]3[C@H]([C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)OC(=O)CC[C@H](C(=O)O)N)O)O)N"                                                                                                                                                 
TKC SMILES           "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)OC(=O)CCC(C(=O)O)N)O)O)N"                                                                                                                                                                      
# 
_pdbx_chem_comp_identifier.comp_id           TKC 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{R})-5-[[[[(2~{R},3~{S},4~{S},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-2-azanyl-5-oxidanylidene-pentanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
TKC "Create component" 2023-04-26 PDBJ 
TKC "Initial release"  2024-04-17 RCSB 
# 
